Comparison of dental measurement systems for taxonomic assignment of first molars

Morphometrics of the molar crown is based traditionally on diameter measurements but is nowadays more often based on 2D image analysis of crown outlines. An alternative approach involves measurements at the level of the cervical line. We compare the information content of the two options in a three-dimensional (3D) digital sample of lower and upper first molars (M(1) and M(1) ) of modern human and Neanderthal teeth. The cervical outline for each tooth was created by digitizing the cervical line and then sectioning the tooth with a best fit plane. The crown outline was projected onto this same plane. The curves were analyzed by direct extraction of diameters, diagonals, and area and also by principal component analysis either of the residuals obtained by regressing out these measurements from the radii (shape information) or directly by the radii (size and shape information). For M(1) , the crown and cervical outline radii allow us to discriminate between Neanderthals and modern humans with 90% and 95% accuracy, respectively. Fairly good discrimination between the groups (80-82.5%) was also obtained using cervical measurements. With respect to M(1) , general overlap of the two groups was obtained by both crown and cervical measurements; however, the two taxa were differentiable by crown outline residuals (90-97%). Accordingly, while crown diameters or crown radii should be used for taxonomic analysis of unworn or slightly worn M(1) s, the crown outline, after regressing out size information, could be promising for taxonomic assignment of lower M1s.     

Conservation of vascular plants in single large and several small mires: species richness, rarity and taxonomic diversity

1. This study on vascular plant species of boreal spruce and pine mires concentrated on two geometrical principles: whether single large or several small (SLOSS) reserves contain more species and whether patch shape should be as nearly circular as possible.
2. SLOSS and patch shape have usually been tested by using species richness. Only a few studies have taken the rarity of species into account, and taxonomic diversity has never been used. In our study, all three of these factors were used.
3. Our results showed that the number of species was not related to the spruce mire size, but it increased in relation to the pine mire size. In contrast, the rarity score increased in relation to the area of spruce mires, but it was not related to the area of pine mires. Taxonomic diversity was not related to size in the case of spruce mires, but it increased with pine mires.
4. The SLOSS comparison showed that several small mires contained more vascular plant species than a large one of equal size. Several small mires also had higher rarity scores and taxonomic diversity than a single large mire. The number of species, rarity score and taxonomic diversity increased in relation to the number of small mires in a group. The same results were obtained with both spruce and pine mires.
5. Species richness, rarity score and taxonomic diversity were not related to mire shape. The results did not depend on the mire type.     

Interspecific analysis of covariance structure in the masticatory apparatus of galagos

The primate masticatory apparatus (MA) is a functionally integrated set of features, each of which performs important functions in biting, ingestive, and chewing behaviors. A comparison of morphological covariance structure among species for these MA features will help us to further understand the evolutionary history of this region. In this exploratory analysis, the covariance structure of the MA is compared across seven galago species to investigate 1) whether there are differences in covariance structure in this region, and 2) if so, how has this covariation changed with respect to size, MA form, diet, and/or phylogeny? Ten measurements of the MA functionally related to bite force production and load resistance were obtained from 218 adults of seven galago species. Correlation matrices were generated for these 10 dimensions and compared among species via matrix correlations and Mantel tests. Subsequently, pairwise covariance disparity in the MA was estimated as a measure of difference in covariance structure between species. Covariance disparity estimates were correlated with pairwise distances related to differences in body size, MA size and shape, genetic distance (based on cytochrome‐b sequences) and percentage of dietary foods to determine whether one or more of these factors is linked to differences in covariance structure. Galagos differ in MA covariance structure. Body size appears to be a major factor correlated with differences in covariance structure among galagos. The largest galago species, Otolemur crassicaudatus, exhibits large differences in body mass and covariance structure relative to other galagos, and thus plays a primary role in creating this association. MA size and shape do not correlate with covariance structure when body mass is held constant. Diet also shows no association. Genetic distance is significantly negatively correlated with covariance disparity when body mass is held constant, but this correlation appears to be a function of the small body size and large genetic distance for Galagoides demidoff. These exploratory results indicate that changing body size may have been a key factor in the evolution of the galago MA. Am. J. Primatol. 69:46–58, 2007. © 2006 Wiley‐Liss, Inc.     

Morphology of the enamel-dentine junction in sections of anthropoid primate maxillary molars

The shape of the enamel-dentine junction (EDJ) in primate molars is regarded as a potential indicator of phylogenetic relatedness because it may be morphologically more conservative than the outer enamel surface (OES), and it may preserve vestigial features (e.g., cuspules, accessory ridges, and remnants of cingula) that are not manifest at the OES. Qualitative accounts of dentine-horn morphology occasionally appear in character analyses, but little has been done to quantify EDJ shape in a broad taxonomic sample. In this study, we examine homologous planar sections of maxillary molars to investigate whether measurements describing EDJ morphology reliably group extant anthropoid taxa, and we extend this technique to a small sample of fossil catarrhine molars to assess the utility of these measurements in the classification of fossil teeth. Although certain aspects of the EDJ are variable within a taxon, a taxon-specific cross-sectional EDJ configuration predominates. A discriminant function analysis classified extant taxa successfully, suggesting that EDJ shape may a reliable indicator of phyletic affinity. When considered in conjunction with aspects of molar morphology, such as developmental features and enamel thickness, EDJ shape may be a useful tool for the taxonomic assessment of fossil molars.     

The role of phylogeny and ecology in shaping morphology in 21 genera and 127 species of Australo‐Papuan myobatrachid frogs

Body shape is predicted to differ among species for functional reasons and in relation to environmental niche and phylogenetic history. We quantified morphological differences in shape and size among 98.5% of the 129 species and all 21 genera of the Australo‐Papuan endemic myobatrachid frogs to test the hypothesis that habitat type predicts body shape in this radiation. We tested this hypothesis in a phylogenetic context at two taxonomic levels: across the entire radiation and within the four largest genera. Thirty‐four external measurements were taken on 623 museum specimens representing 127 species. Data for seven key environmental variables relevant to anurans were assembled for all Australian‐distributed species based on species' distributions and 131,306 locality records. The Australo‐Papuan myobatrachid radiation showed high diversity in adult body size, ranging from minute (15 mm snout–vent length) to very large species (92 mm), and shape, particularly sin relative limb length. Five main morphological and environmental summary variables displayed strong phylogenetic signal. There was no clear relationship between body size and environmental niche, and this result persisted following phylogenetic correction. For most species, there was a better match between environment/habitat and body shape, but this relationship did not persist following phylogenetic correction. At a broad level, species fell into three broad groups based on environmental niche and body shape: 1) species in wet habitats with relatively long limbs, 2) species in arid environments with relatively short limbs (many of which are forward or backward burrowers) and 3) habitat generalist species with a conservative body shape. However, these patterns were not repeated within the four largest genera ? Crinia, Limnodynastes, Pseudophryne and Uperoleia. Each of these genera displayed a highly conservative anuran body shape, yet individual species were distributed across the full spectrum of Australian environments. Our results suggest that phylogenetic legacy is important in the evolution of body size and shape in Australian anurans, but also that the conservative body plan of many frogs works well in a wide variety of habitats.     

Production and morphology of fruit and seeds in Genisteae (Fabaceae) of south-west Spain

The productivity and morphology of fruit and seeds were studied in 30 species (and subspecies) of the tribe Genisteae (Fabaceae) in south-west Spain. The morphological characters of greatest taxonomic value both for the segregation of the two subtribes (Genistinae and Lupininae) recognized in Genisteae and for the delimitation of the lower taxonomic levels (genus and species) are the size of the pod and characters of the pericarp, the colour and weight of the seeds, whether or not an ad exists, and the shape, size, and position of the hilum. In contrast, characters of little taxonomic interest are pod colour, shape and number of seeds, and characters of the lens. There were also found to be major relationships between fruit and seed, and between these and other floral (e.g. corolla size) or reproductive (e.g. polledovule [P/O] and seed/ovule [S/O] ratios) attributes. Thus in this tribe, pod size was positively correlated with corolla size, seed size, the number of viable seeddfruit, and the S/O and P/O ratios. Corolla size was positively correlated with the number of viable seeds/ fruit and with the seed weight. Similarly, the number of seeddfruit was positively correlated with the fruit's weight and with the number of ovules/ovary. Also, the weight of the seeds was positively correlated with the pollen/ovule ratio. There was also positive correlation between the S/O and P/O ratios.     

Biometric variability of Hadwenius tursionis (Marchi, 1873) (Digenea,Campulidae) from the intestine of the bottlenose dolphin Tursiops truncatus (Montagu, 1821)

The species discrimination in the family Campulidae is largely based on morphometric characters (absolute measurements and ratios). To assess the variability of this characters we have studied the campulid species Hadwenius tursionis from four Mediterranean bottlenose dolphins Tursiops truncatus from the Western Mediterranean. In H. tursionis most absolute measurements differed significantly across the infrapopulations, showing high coefficients of variation. Only egg dimensions appeared to be fairly conservative. Body ratios were less variable than absolute measurements, but growth patterns did vary significantly between the infrapopulations studied. None of the ratios previously used in relation to other species of the family Campulidae indicated either isometric or allometric growth in this case. Only the ratios concerning the size of the gonads and the shape of the gonads and suckers showed isometry. It is concluded that absolute measurements and ratios should be used with caution in relation to the separation of species of the family Campulidae unless their intrinsic variability can be established beforehand.     

Scanning electron microscopy of silica bodies and other epidermal features in Gibasis (Tradescantia) leaf

The scanning electron microscope is used to examine epidermal preparations belonging to three species of Gibasis , a genus allied to Tradescantia. The surface topography of the leaf is exposed for investigation at high magnifications, the observations add new information about structural projections from the surface and contribute to an understanding of silica deposition and its organization. Hairs of three main types occur: (1) short two-celled trichomes, hook or prickle hairs, (2) long uniseriate hairs consisting of four to six cells, (3) three-celled glandular micro-hairs. The arrangement and shape of epidermal cells and stomata are reported. Epidermal papillae were observed for the first time in two of the three species; their morphology is described in detail and their spacing expressed mathematically. Variations in the structure and distribution of silica cells are depicted, and new aspects of the silica bodies are displayed in relief. The taxonomic significance of these anatomical characters is discussed in relation to species and chromosome numbers.     

Cervical and crown outline analysis of worn Neanderthal and modern human lower second deciduous molars

Despite the general increase in digital techniques for dental morphometric analyses, only a few methods are available to study worn teeth. Moreover, permanent dentitions are studied much more frequently than deciduous teeth. In this study, we address both issues by providing a taxonomic classification of Neanderthal and modern human (MH) lower second deciduous molars (dm₂s) through the analysis of crown and cervical outlines. Crown and cervical outlines were obtained from a three‐dimensional (3D) digital sample of uniformly oriented dm₂s. Both outlines were centered on the centroid of their area and represented by 16 pseudolandmarks obtained by equiangularly spaced radial vectors out of the centroid. We removed size information from the oriented and centered outlines with a uniform scaling of the pseudolandmark configurations to unit Centroid Size. Group shape variation was evaluated separately for the dm₂ crown and cervical outlines through a shape–space principal component (PC) analysis. Finally, quadratic discriminant analysis of a subset of PCs was used to classify the specimens. Our results demonstrate that both outlines successfully separate the two groups. Neanderthals showed a buccodistal expansion and convex lingual outline shape, whilst MHs have buccodistal reduction and straight lingual outline shape. Therefore, we confirmed that the cervical outline represents an effective parameter for distinguishing between the two taxa when dealing with worn or damaged dm₂s. Am J Phys Anthropol 2012. © 2012 Wiley Periodicals, Inc.     

AN EMPIRICALLY BASED MODEL OF VARIATION IN ROTATIONAL ELEMENTS IN CENTRIC DIATOMS WITH COMMENTS ON RATIOS IN PHYCOLOGY1

Ratios are commonly used to relate taxonomic, physiological and ecological properties of algal cells to variation in cell shape and size. However, ratios can be more difficult to interpret than the original variables. A detailed example of a ratio commonly used in diatom taxonomy is presented. The abundance of a reported rotational element on a centric diatom valve is often expressed as density (e.g. number of marginal spines per μm of circumference), rather than simply as total number. It is empirically demonstrated that density if often curvilinearly related to diameter, whereas total number is linearly related (when related at all) to diameter. This linear relationship is the basis for an empirical model which accounts for variation in density in real examples. Under this model, densitywill be a poorer taxonomic character than total number except under rare occasions (e.g. when the slope of the total element versus diameter regression in zero and variance in the numerator is not dependent on the denominator). Other ratios are similarly difficult to interpret. Length/width (or width/length) is often curvilinearly related to width (or width/lenght) is often curvilinearly related to width (Length) because variation is compounded from several sources. Surface/volume has been employed to investigate the relative contributions of size and shape to phytoplankton sinking. However, the properties of this ratio have not been fully investigated, and the relationship between size, shape and sinking rate has not been fully elucidated for the data set in question.     

Development and phenotypic correlations: the evolution of tooth shape in Sorex araneus

Summary Do morphogenetic processes cause common patterns of phenotypic covariation, and do those patterns evolve over microevolutionary timescales? Evolution of molar shape variance–covariance (P) matrixes was studied in five populations of the common shrew, Sorex araneus. P matrix evolution was assessed using matrix correlation, matrix disparity, and common principal component analysis (CPCA). Significant changes in covariance structure were found among the populations, but the differences were small. A computer model was used to estimate the theoretical covariance introduced into the phenotype by developmental interactions. Molar developmental processes explained some of the covariance in the shrew samples, especially as measured by matrix correlation, but the proportion was relatively small. Developmental principal components (PCs) were only infrequently associable with common principal components. The results suggest that molar shape P matrixes can evolve quickly in a manner only loosely constrained by development, and that their shared covariance is probably dominated by factors more proximate than development. Rarefaction showed that sample size severely affected P comparisons when n < 15 for matrix correlation and disparity, and when n < 30 for CPCA. Among CPCA evaluation criteria, Akaike Information Criterion performed better than jump‐up at n < 30, but worse at n > 30.     

Control of myocyte remodeling in vitro with engineered substrates

Tissue microenvironments can regulate cell behavior by imposing physical restrictions on their geometry and size. An example of these phenomena is cardiac morphogenesis, where morphometric changes in the heart are concurrent with changes in the size, shape, and cytoskeleton of ventricular myocytes. In this study, we asked how myocytes adapt their size, shape, and intracellular architecture when spatially confined in vitro. To answer this question, we used microcontact printing to physically constrain neonatal rat ventricular myocytes on fibronectin islands in culture. The myocytes spread and assumed the shape of the islands and reorganized their cytoskeleton in response to the geometric cues in the extracellular matrix. Cytoskeletal architecture is variable, where myocytes cultured on rectangular islands of lower aspect ratios (length to width ratio) were observed to assemble a multiaxial myofibrillar arrangement; myocytes cultured on rectangles of aspect ratios approaching those observed in vivo had a uniaxial orientation of their myofibrils. Using confocal and atomic force microscopy, we made precise measurements of myocyte volume over a range of cell shapes with approximately equal surface areas. When myocytes are cultured on islands of variable shape but the same surface area, their size is conserved despite the changes in cytoskeletal architecture. Our data suggest that the internal cytoskeletal architecture of the cell is dependent on extracellular boundary conditions while overall cell size is not, suggesting a growth control mechanism independent of the cytoskeleton and cell geometry.     

Premolar root morphology and metric variation in Pan troglodytes verus

Premolar root form remains an important taxonomic character in hominin alpha taxonomy. Variation in detailed aspects of root structure remains poorly characterized in extant apes. This limited comparative context hinders evaluations of the significance of root form variation in hominin systematics. Using micro‐computed tomography we examine morphological variation in premolars in 51 (n = 128 premolars) West African chimpanzees (Pan troglodytes verus). We categorize premolar root/canal form and number, based on the external root surface and pulp canal morphology, and test for a relationship between canal configuration and sex, jaw size, tooth/root size and cervix shape. Jaw size and root size/shape were quantified using standard metrics, and geometric morphometrics was used to examine root form and cervix shape. Our results confirm previous findings in external root form, but reveal previously undocumented variation in mandibular premolar canal number/form in this subspecies. The LP3 and UP4 exhibit variation in canal number/form, while the UP3 is restricted to external root configurations. The LP4 expresses only a single root/canal form. Generally, in LP3 and UP4 there is no correlation between canal form/number and sex, root size, and jaw size; UP4 canal variation covaried with cervix shape and size. Cervix size is significantly greater in three canal UP4s than two canal UP4s. Our results highlight canal form/number as an important aspect when characterizing root form. The implications of our results for the taxonomic utility of root form within the hominoid and hominin clades are discussed. Am J Phys Anthropol 150:632–646, 2013. © 2013 Wiley Periodicals, Inc.     

Size and shape variation in a Lesser Antillean anole, Anolis oculatus (Sauria: Iguanidae) in relation to habitat.

The anole fauna of the Lesser Antilles is depauperate in relation to that of the Greater Antilles, where complex communities characterized by adaptive specialization and convergent structure are present. Much of this adaptation is the result of changes in body size and shape, probably as a result of interspecific competition. Here we present data on variation in size and shape within a solitary Lesser Antillean species occupying an ecologically heterogenous island, and test the hypothesis that natural selection for varying environmental conditions is the cause of this variation. Univariate (analysis of variance), bivariate (analysis of covariance) and multivariate (multiple-group principal component analysis, canonical variate analysis) analysis showed that there is considerable geographic variation in size and shape within Anolis oculatus on Dominica. Partial Mantel tests rejected the null hypothesis of no association between size and shape and environmental variation. The possible proximate and evolutionary mechanisms responsible for these patterns are discussed. Despite these overall associations, a considerable amount of variation in shape appears to be unrelated to environmental variation.     

Elliptical fourier analysis of symphyseal shape in great ape mandibles

The midsagittal profile of the mandibular symphysis has served as both a taxonomic marker and a phylogenetically salient character in debates over hominoid evolution. Nevertheless, the utility of symphyseal shape as an informative attribute for paleobiological reconstructions is suspect. Quantification of shape variation has proven to be particularly problematic; it has long been recognized that conventional linear measurements (and the indices derived from them), while replicable, summarize aspects of shape very poorly because of the vast amount of contour information that is lost in the process.In this study, a type of Fourier analysis is applied to cross-sectional contours of ape mandibles in order to provide a mathematical accounting of shape variation in a "global" sense; that is, by applying the "totality" of contour information in a comparative analysis. Shape variation in the mandibular symphysis is explored through the decomposition of coordinate data into elliptical Fourier coefficients. These coefficients are used to compute average taxonomic distances (ATD) among individuals of chimpanzees, gorillas, and orang-utans. The resulting shape-based distances are summarized via clustering (UPGMA) and ordination (principal coordinates analysis-PCO). Principal coordinate scores are subjected to analysis of variance in univariate and multivariate designs; these data are also applied to discriminant function analyses.Species and sex effects on morphology are statistically significant; however, no significant interaction of these factors is indicated. This would seem to imply that patterns of sexual dimorphism are not distinct among great apes; to the contrary, within-species sex comparisons reveal that significant size and shape dimorphism is present only in Gorilla. Despite significant size dimorphism in Pan and Pongo, significant shape differences between males and females are not apparent in these taxa.These results suggest that it is theoretically possible to sort taxa by a symphyseal shape criterion, but the discriminant function results suggest that there still exists a large potential for error in assigning particular shapes to a given species or sex. Thus, despite real shape differences among these species, the use of symphyseal shape as a character in species identification or in systematic arguments remains limited and problematic.     

Sexual dimorphism in the size and shape of the os coxae and the effects of microevolutionary processes

Sexual dimorphism in the human pelvis has been studied widely for forensic purposes, but it is still unclear to what extent it varies among human populations. There is evidence that microevolutionary processes, both neutral (i.e., population history) and selective (e.g., thermoregulatory adaptation and size‐related obstetrical constraints) contribute to explain pelvic variation among populations, but the extent to which these factors affect pelvic sexual dimorphism is unknown. In this study, I analyze sexual dimorphism of the os coxae in 20 globally distributed human populations, using 3D morphometric data to separate the size and shape components of sexual differences. After evaluating population differences in the degree and pattern of sexual dimorphism, I test for the effect of population history, climate, and body size in shaping global diversity. The results show that size and shape dimorphism follow different patterns. Coxal size dimorphism is generally quite consistent through populations, with males bigger than females, but it appears to be reduced in small‐bodied populations, possibly in relation to obstetrically‐related selective pressures for a spacious birth canal. Beyond a general species‐wide pattern of shape dimorphism, commonly used for forensic sex determination, other aspects of sexual differences in coxal shape vary among human populations, reflecting the effects of neutral demographic processes and climatic adaptation. Am J Phys Anthropol 153:167–177, 2014. © 2013 Wiley Periodicals, Inc.