Soil organic carbon and nitrogen stocks in an age-sequence of poplar stands planted on marginal agricultural land in Northeast China

The capacity of a ground-based canopy sensor to detect stress-related parameters of cotton (Grossypium hirsutum) was investigated in a split-plot field experiment for two consecutive growing seasons in central Greece. Three levels of irrigation (22, 31 and 40 cm water) were the whole-plot factor and three rates of fertilizer (60, 110 or 160 kg N ha^?1) were the split-plot factor with three replications. Irrigation level was the major factor that explained variations in leaf isotopic composition (δ¹⁵N and δ¹³C) within growing seasons and cotton yield at harvest. The rate of fertilizer application did not have a significant effect on cotton yield because there was sufficient residual soil N to meet crop needs. Canopy NDVI was highly correlated to yield when cotton response to differential irrigation was detected. The obtained correlations between canopy reflectance and stress-related parameters (leaf N, δ¹⁵N and δ¹³C) and the stability of the relationship between NDVI and yield over two consecutive seasons indicated that ground-based remote sensing can be used to assess the level of water stress that occurred during the growing season. The application of this technology for in-field monitoring of water stress may prove valuable in semiarid regions where water is often the most limiting factor in crop production.     

Soil mineralizable nitrogen and soil nitrogen supply under two-year potato rotations

Two-year potato rotations were evaluated for their effects on soil mineralizable N and soil N supply. Pre-plant soil samples (0–15 cm) collected from the potato year after seven rotation cycles were used to estimate soil mineralizable N using a 24 week aerobic incubation. Potentially mineralizable N (N ₀ ) ranged from 102 to 149 kg N ha^?1, and was greater after pea/white clover and oats/Italian ryegrass than after oats by an average of 35 and 22%, respectively. Labile, intermediate and stable mineralizable N pools were increased after pea/white clover compared with oats, whereas only the stable mineralizable N pool was increased after oats/Italian ryegrass. Potato plant N uptake with no fertilizer applied was greater in potato-pea/white clover compared with the three other rotations (126 vs. average of 67 kg N ha^?1). Choice of rotation crop in potato production influences both the quantity and quality of soil mineralizable N.     

Effects of salinity and nitrogen on cotton growth in arid environment

The influences of different N fertilization rates and soil salinity levels on the growth and nitrogen uptake of cotton was evaluated with a pot experiment under greenhouse conditions. Results showed that cotton growth measured as plant height was significantly affected by the soil salinity and N-salinity interaction, but not by N alone. Cotton was more sensitive to salinity during the emergence and early growth stages than the later developmental stages. At low to moderate soil salinity, the growth inhibition could be alleviated by fertilizer application. Soil salinity was a dominated factor affecting cotton’s above-ground dry mass and root development. Dry mass of seed was reduced by 22%, 52%, and 84% respectively, when the soil salinity level increased from control level of 2.4 dS m^?1 to 7.7 dS m^?1, 12.5 dS m^?1 and to 17.1 dS m^?1, respectively. N uptake increased with N fertilization at adequate rates at both low and medium soil salinities but was not influenced by over N fertilization. At higher salinities, N uptake was independent of N rates and mainly influenced by soil salinity. The uptake of K decreased with soil salinity. The concentration of Na, Cl and Ca in plant tissues increased with soil salinity with highest concentrations in the cotton leaf.     

Quantitative proteomics to study the response of potato to contrasting fertilisation regimes

There is concern over the sustainability and environmental impact of mineral fertilisers and crop protection inputs used in intensive arable crop production systems. However, replacing mineral with organic fertilisers (animal and green manures) and restricting the use of chemosynthetic crop protection may significantly reduce crop yields. The effects of (a) replacing mineral with composted cattle manure fertiliser input and (b) omitting pesticide-based crop protection on potato (Solanum tuberosum) tuber yield, leaf and tuber mineral nutrient content and leaf protein profiles were investigated. Switching to organic fertiliser had a greater effect on yield and protein profiles than the omission of chemosynthetic crop protection. Leaf N and P composition were significant drivers of protein expression, particularly proteins involved in photosynthesis such as the large subunit of RuBisCO, RuBisCO activase and the photosystem I reaction centre, which were at higher abundances in potato leaves grown under mineral fertiliser regimes. Proteins known to be induced in response to stress, such as dehydroascorbate reductase and Glutathione S-transferases, were also shown to be up-regulated under mineral fertilisation, possibly associated with higher Cd composition, whereas two proteins known to be involved in biotic stress (1,3-β-d-glucan glucanohydrolase; putative Kunitz-type tuber invertase inhibitor) were more abundant under compost fertilisation. Results showed that switching from mineral to organic fertilisers led to reduced N availability, a significant change in leaf protein expression and lower tuber yield. In contrast, omission of chemosynthetic crop protection inputs had limited effects on protein expression and no significant effect on tuber yield. This study provides information on the effects of changes in nutrient supply on protein expression patterns. It is a prerequisite for the development of functional molecular markers for a directed strategy to inform breeding programmes to improve potato nutrient use efficiency.     

Field observations on nitrogen catch crops. III. Transfer of nitrogen to the succeeding main crop

In temperate climates with a precipitation surplus during autumn and winter, nitrogen (N) catch crops can help to reduce nitrogen losses from cropping systems by absorbing nitrogen from the soil and transfer it to a following main crop. In two field experiments the catch crop species winter rye (Secale cereale) and forage rape (Brassica napus ssp. oleifera (Metzg.) Sinsk) or oil radish (Raphanus sativus spp. oleiferus (DC.) Metzg.) were planted end of August and 3 weeks later with a non-limiting supply of N and zero-N controls. In the next spring catch crops were incorporated into the soil. In Expt 1, N transfer was measured as (i) the N uptake of a potato test crop, grown with zero and 12.5 g m^–2 N applied, and (ii) the increase in soil mineral N (0–30 cm) in uncropped soil covered with polythene film. In Expt 2, N transfer was measured as the increase in soil mineral N in covered cylinders placed in uncropped soil (in situ incubation). Subsidiary laboratory incubations were performed in Expt 2. In Expt 1, the apparent recovery in potato of fertilizer N (R _f) was 0.56. The recovery in potato of N mineralized from 'native' N pools other than catch crop material (R _n) ranged from 0.43 to 0.51, depending on the value assumed for the depth of N extraction by potato roots. The average recovery in potato of incorporated catch crop N (R _c) was 0.34. Expressed as `fertilizer N replacement factor' (F _r) the latter was 0.61 (i.e. 1 kg of N in catch crop material counts for 0.61 kg fertilizer N). Under the film in Expt 1 the fraction net mineralization of incorporated catch crop N (M _n) was 0.36 on August 11 and 0.43 on October 18. In Expt 2, the average value of M _n was 0.31, which was lower than in Expt 1 and probably associated with the drier soil in Expt 2. In the laboratory incubations (20°C) M _n showed values up to 0.54 after 84 days with the largest rates of change in mineralization occuring early after the start of the incubation. In conjunction with literature data it is concluded that cultivation of nitrogen catch crops shows promise as a means to reduce N input and N losses in temperate climates with wet winters.     

A robust genetic transformation protocol to obtain transgenic shoots of Solanum tuberosum L. cultivar ‘Kufri Chipsona 1’

The genetic transformation of plants is an important biotechnological tool used for crop improvement for many decades. The present study was focussed to investigate various factors affecting genetic transformation of potato cultivar ‘Kufri Chipsona 1’. It was observed that explants pre-cultured for 2 days on MS2 medium (MS medium containing 10 µM silver nitrate, 10 µM BA, 15 µM GA3), injured with a surgical blade and co-cultivated with Agrobacterium tumefaciens strain EHA105 [O.D600 (0.6)] for 2 days results in maximum transient β-glucuronidase (GUS) expression. The addition of 100 µM acetosyringone in MS2 medium also increased rate of transient GUS expression in both the explants. Clumps of putative transgenic shoots were regenerated using the optimised culture conditions from leaf and internodal explants. The stable integration of T-DNA was established using histochemical staining for GUS and amplification of DNA fragment specific to nptII and uidA genes. Within the clumps, around 67.85% of shoots showed uniform GUS expression in all the tissues and about 32.15% shoots show intermittent GUS expression establishing chimeric nature. Uniform GUS staining of the tissue was used as initial marker of non-chimeric transgenic shoots. Quantitative expression of nptII transgene was found to be directly proportional to uniformity of GUS staining in transgenic shoots. The present investigation indicated that manipulation of culture conditions and the medium composition may help to get transgenic shoots with uniform expression of transgene in all the tissues of potato cultivar ‘Kufri Chipsona 1’.     

Nitrogen use efficiency of organically fertilized white cabbage and residual effects on subsequent beetroot

Background and aims

The low N availability in organic cropping systems requires an efficient use of the limited N sources. The study aimed to analyze the N efficiency of organically fertilized white cabbage on a crop and crop rotation basis.

Methods

Effects of soil-incorporated lupine seedlings and seed meal on the N use efficiency (NUE) and individual NUE components of cabbage were investigated in field experiments. Cabbage was followed by beetroot to quantify residual fertilizer effects.

Results

Generally, NUE decreased with increasing N availability. Nitrogen uptake efficiency, however, was low at low N supply and increased curvilinearly to an asymptotic maximum. Variation in harvest index between and within experimental years was explained by differences in thermal growing time and initial cabbage growth, respectively. The increase in beetroot N supply by fertilizer treatments averaged 18 % of applied lupine seed N corresponding to 63 % of the incremental N in cabbage residues.

Conclusions

Dry matter partitioning alters during cabbage yield formation in favor of the harvest residue fraction if abiotic stress like water shortage occurs directly after crop establishment, being associated with reduced NUE. The residual effect depends largely on the re-utilization of incremental fertilizer N in cabbage residues and thus on the short-term net N mineralization of organic fertilizers.     

Nitrogen mineralization, plant uptake and nitrate leaching following the incorporation of (15N)-labeled cauliflower crop residues (Brassica oleracea) into the soil: a 3-year lysimeter study

A 3-year field lysimeter experiment was performed to determine transformations of 15N-labeled cauliflower (Brassica oleracea) residues incorporated into lysimeter topsoil in a potato (Solanum tuberosum)/cauliflower rotation. Only the potato crop received 150 kg mineral N ha^?1y^?1. Cauliflower yields were high (12–13 t fresh matter ha^?1), and N returned to the soil represented 51% of the aboveground plant N uptake. The 15N recovery by the potato/cauliflower rotation began at 46%, then decreased sharply to 12 and 6% for the second and third year, respectively. The cumulative 15N leaching rate was only 3%; 63% remained in the soil 3 years after incorporation. Soil N mineralization rates described by a parallel first-order kinetic model predicted 27, 7 and 6% of residual N lost annually during the first, second and third year, respectively. Thus, a potato/cauliflower rotation with moderate N fertilization optimizes N recovery of crop residues and can control leaching loss efficiently.     

A second L-type isozyme of potato glucan phosphorylase: cloning,antisense inhibition and expression analysis

In potato tubers two starch phosphorylase isozymes, types L and H, have been described and are believed to be responsible for the complete starch breakdown in this tissue. Type L has been localized in amyloplasts, whereas type H is located within the cytosol. In order to investigate whether the same isozymes are also present in potato leaf tissue a cDNA expression library from potato leaves was screened using a monoclonal antibody recognizing both isozyme forms. Besides the already described tuber L-type isozyme a cDNA clone encoding a second L-type isozyme was isolated. The 3171 nucleotide long cDNA clone contains an uninterrupted open reading frame of 2922 nucleotides which encodes a polypeptide of 974 amino acids. Sequence comparison between both L-type isozymes on the amino acid level showed that the polypeptides are highly homologous to each other, reaching 81–84% identity over most parts of the polypeptide. However the regions containing the transit peptide (amino acids 1–81) and the insertion sequence (amino acids 463–570) are highly diverse, reaching identities of only 22.0% and 29.0% respectively.Northern analysis revealed that both forms are differentially expressed. The steady-state mRNA levels of the tuber L-type isozyme accumulates strongly in potato tubers and only weakly in leaf tissues, whereas the mRNA of the leaf L-type isozyme accumulates in both tissues to the same extent. Constitutive expression of an antisense RNA specific for the leaf L-type gene resulted in a strong reduction of starch phosphorylase L-type activity in leaf tissue, but had only sparse effects in potato tuber tissues. Determination of the leaf starch content revealed that antisense repression of the starch phosphorylase activity has no significant influence on starch accumulation in leaves of transgenic potato plants. This result indicated that different L-type genes are responsible for the starch phosphorylase activity in different tissues, but the function of the different enzymes remains unclear.     

Effect of potassium and zinc applications on dry-matter production and nutrient uptake by potato variety ‘Kufri chandramukhi’ (Solanum tuberosum L.) in an alluvial soil of Uttar Pradesh

Summary Field experiment was conducted during 1980–81 on the Indo-Gangetic alluvial soil of Pura, Kanpur to study the effects of added potassium and zinc on dry-matter production and uptake of these nutrients by potato crop. Increasing supply of potassium and zinc significantly increased the dry-matter production and concentration and uptake of respective nutrients in different crop components. The effects of combined application of potassium and zinc was positive in influencing the dry-matter production and K, Zn uptake by potato crop. Increasing supply of potassium showed beneficial effect on the absorption and translocation of zinc in plant system indicating thereby greater utilization of fertilizer zinc by the crop. Increasing supply of zinc, however, could not influence the concentration of potassium.     

Does genotypic variation in nitrogen remobilisation efficiency contribute to nitrogen efficiency of winter oilseed-rape cultivars (Brassica napus L.)?

Aims

Winter oilseed-rape production is characterized by a low N efficiency, due to low N uptake and insufficient N remobilisation to the seeds. In particular, a reduction of leaf N losses might be one way to improve N efficiency of this crop. It was tested if variations in leaf N losses and in stem residual N amounts at maturity exist between cultivars differing in N efficiency.

Methods

In a 3-year field experiment, four oilseed rape cultivars were cultivated at limiting, medium, and high N supply.

Results

N harvest indices in this study were comparatively high (around 0.79) and leaf N losses amounted to at most 13 kg N ha^?1. 86 % of the leaf N present at the beginning of flowering was remobilised, irrespective of N rate or cultivar. Nevertheless, genotypic variation in leaf N loss existed. They were mainly due to differences in leaf N accumulation until flowering. Residual N in stems (up to 33 kg N ha^?1) was higher than leaf N losses and varied more between treatments but was not related to genotypic variation in yield.

Conclusions

N uptake after flowering was more important than N remobilisation from vegetative biomass for genotypic variation in seed yield both at low and high N supply.     

Gene expression changes in phosphorus deficient potato (Solanum tuberosum L.) leaves and the potential for diagnostic gene expression markers

Background

There are compelling economic and environmental reasons to reduce our reliance on inorganic phosphate (Pi) fertilisers. Better management of Pi fertiliser applications is one option to improve the efficiency of Pi fertiliser use, whilst maintaining crop yields. Application rates of Pi fertilisers are traditionally determined from analyses of soil or plant tissues. Alternatively, diagnostic genes with altered expression under Pi limiting conditions that suggest a physiological requirement for Pi fertilisation, could be used to manage Pifertiliser applications, and might be more precise than indirect measurements of soil or tissue samples.

Results

We grew potato (Solanum tuberosum L.) plants hydroponically, under glasshouse conditions, to control their nutrient status accurately. Samples of total leaf RNA taken periodically after Pi was removed from the nutrient solution were labelled and hybridised to potato oligonucleotide arrays. A total of 1,659 genes were significantly differentially expressed following Pi withdrawal. These included genes that encode proteins involved in lipid, protein, and carbohydrate metabolism, characteristic of Pi deficient leaves and included potential novel roles for genes encoding patatin like proteins in potatoes. The array data were analysed using a support vector machine algorithm to identify groups of genes that could predict the Pi status of the crop. These groups of diagnostic genes were tested using field grown potatoes that had either been fertilised or unfertilised. A group of 200 genes could correctly predict the Pi status of field grown potatoes.

Conclusions

This paper provides a proof-of-concept demonstration for using microarrays and class prediction tools to predict the Pi status of a field grown potato crop. There is potential to develop this technology for other biotic and abiotic stresses in field grown crops. Ultimately, a better understanding of crop stresses may improve our management of the crop, improving the sustainability of agriculture.     

Agrobacterium-Mediated Transient Gene Expression and Silencing: A Rapid Tool for Functional Gene Assay in Potato

Potato is the third most important food crop worldwide. However, genetic and genomic research of potato has lagged behind other major crops due to the autopolyploidy and highly heterozygous nature associated with the potato genome. Reliable and technically undemanding techniques are not available for functional gene assays in potato. Here we report the development of a transient gene expression and silencing system in potato. Gene expression or RNAi-based gene silencing constructs were delivered into potato leaf cells using Agrobacterium-mediated infiltration. Agroinfiltration of various gene constructs consistently resulted in potato cell transformation and spread of the transgenic cells around infiltration zones. The efficiency of agroinfiltration was affected by potato genotypes, concentration of Agrobacterium, and plant growth conditions. We demonstrated that the agroinfiltration-based transient gene expression can be used to detect potato proteins in sub-cellular compartments in living cells. We established a double agroinfiltration procedure that allows to test whether a specific gene is associated with potato late blight resistance pathway mediated by the resistance gene RB. This procedure provides a powerful approach for high throughput functional assay for a large number of candidate genes in potato late blight resistance.     

Spread of potato leafroll virus is decreased from plants of potato clones in which virus accumulation is restricted

Tubers of eight potato clones infected with potato leafroll luteovirus (PLRV) were planted as ‘infectors’ in a field crop grown, at Invergowrie, of virus-free potato cv. Maris Piper in 1989. The mean PLRV contents of the infector clones, determined by enzyme-linked immunosorbent assay (ELISA) of leaf tissue, ranged from c. 65 to 2400 ng/g leaf. Myzus persicae colonised the crop shortly after shoot emergence in late May and established large populations on all plants, exceeding 2000/plant by 27 June. Aphid infestations were controlled on 30 June by insecticide sprays. Aphid-borne spread of PLRV from plants of the infector clones was assessed in August by ELISA of foliage samples from the neighbouring Maris Piper ‘receptors’. Up to 89% infection occurred in receptor plots containing infector clones with high concentrations of PLRV. Spread was least (as little as 6%) in plots containing infectors in which PLRV concentrations were low. Primary PLRV infection in guard areas of the crop away from infectors was 4%. Some receptor plants became infected where no leaf contact was established with the infectors, suggesting that some virus spread may have been initiated by aphids walking across the soil.     

Insufficient nitrogen supply from symbiotic fixation reduces seasonal crop growth and nitrogen mobilization to seed in highly productive soybean crops

Nitrogen (N) supply can limit the yields of soybean [Glycine max (L.) Merr.] in highly productive environments. To explore the physiological mechanisms underlying this limitation, seasonal changes in N dynamics, aboveground dry matter (ADM) accumulation, leaf area index (LAI) and fraction of absorbed radiation (fAPAR) were compared in crops relying only on biological N₂ fixation and available soil N (zero-N treatment) versus crops receiving N fertilizer (full-N treatment). Experiments were conducted in seven high-yield environments without water limitation, where crops received optimal management. In the zero-N treatment, biological N₂ fixation was not sufficient to meet the N demand of the growing crop from early in the season up to beginning of seed filling. As a result, crop LAI, growth, N accumulation, radiation-use efficiency and fAPAR were consistently higher in the full-N than in the zero-N treatment, leading to improved seed set and yield. Similarly, plants in the full-N treatment had heavier seeds with higher N concentration because of greater N mobilization from vegetative organs to seeds. Future yield gains in high-yield soybean production systems will require an increase in biological N₂ fixation, greater supply of N from soil or fertilizer, or alleviation of the trade-off between these two sources of N in order to meet the plant demand.     

Effect of nitrogen supply on barley pigment concentrations

Summary Changes in plant pigment concentrations in barley and relationships between pigment levels and pigment ratios and plant N and N fertilizer supply were investigated in field experiments over two seasons. Pigment concentrations were superior to pigment ratios as indicators of plant N or fertilizer N supply, but only reflected plant N concentration and fertilizer N level from late tillering/early stem extension. Chlorophylls to carotenoid ratios increased with increasing N fertilizer application, whereas late in the season the chlorophyll a to chlorophyll b ratio decreased as N fertilization rate increased. The effects may be due to the increased rate of maturation of the crop at lower rates of N fertilizer application.     

Turnover of residual 15N-labelled fertilizer N in soil following harvest of oilseed rape (t Brassica napus L.)

We studied the fate of ¹⁵N-labelled fertilizer nitrogen in a sandy loam soil after harvest of winter oilseed rape (Brassica napus L. cv. Ceres) given 100 or 200 kg N ha^-1 in spring, with or without irrigation. Our main objective was to quantify the temporal variations of the soil mineral N, the extractable soil organic N and soil microbial biomass N, and fertilizer derived N in these pools during autumn and winter. Nitrogen use efficiency of the oilseed rape crop varied from 47% of applied N in the 100N, irrigated treatment to 34% in the 200N, non-irrigated treatment. However, only in the latter treatment did we find significantly higher fertilizer derived soil mineral N than in the three other treatments which all had low soil mineral N contents at the first sampling after harvest (8 days after stubble tillage). Between 31% and 42% of the applied N could not be accounted for in the harvested plants or 0-15 cm soil layer at this first sampling. Over the following autumn and winter none of the remaining fertilizer derived soil N was lost from the 0–5 cm depth, but from the 5–15 cm depth a marked proportion of N derived from fertilizer was lost, probably by leaching. Negligible amounts of fertilizer derived extractable soil organic and mineral N (<1 kg N ha^-1, 0-15 cm) were found in all treatments after the first sampling.Soil microbial biomass N was not significantly affected by treatments and showed only small temporal variability (±11% of the mean 76 kg N ha^-1, 0- 15 cm depth). Surprisingly, the average amount of soil microbial biomass N derived from fertilizer was significantly affected by the treatments, with the extremes being 5.5 and 3.1 kg N ha^-1 in the 200N, non-irrigated and 100N, irrigated treatments, respectively. Also, the estimated exponential decay rate of microbial biomass N derived from fertilizer, differed greatly (2 fold) between these two treatments, indicating highly different microbial turnover rates in spite of the similar total microbial biomass N values. In studies utilising ¹⁵N labelling to estimate turnover rates of different soil organic matter pools this finding is of great importance, because it may question the assumption that turnover rates are not affected by the insertion of the label.     

Transposon based activation tagging in diploid strawberry and monoploid derivatives of potato

Key message

Diploid strawberry and potato transformed with a transposon tagging construct exhibited either global (strawberry) or local transposition (potato). An activation tagged, compact-sized strawberry mutant overexpressed the gene adjacent to Ds.

Abstract

As major fruit and vegetable crops, respectively, strawberry and potato are among the first horticultural crops with draft genome sequences. To study gene function, we examined transposon-tagged mutant strategies in model populations for both species, Fragaria vesca and Solanum tuberosum Group Phureja, using the same Activation/Dissociation (Ac/Ds) construct. Early somatic transposition during tissue culture occurred at a frequency of 18.5 % in strawberry but not in potato transformants. Green fluorescent protein under a monocot promoter was a more reliable selectable marker in strawberry compared to potato. BASTA (gluphosinate herbicide) resistance served as an effective selectable marker for both species (80 and 85 % reliable in strawberry and potato, respectively), although the effective concentration differed (0.5 % for strawberry and 0.03 % for potato). Transposons preferentially reinserted within genes (exons and introns) in both species. Real-time quantitative PCR revealed enhanced gene expression (670 and 298-fold expression compared to wild type in petiole and leaf tissue, respectively) for an activation tagged strawberry mutant with Ds inserted about 0.6 kb upstream from a gene coding for an epidermis-specific secreted glycoprotein EP1. Our data also suggested that endopolyploid (diploid) cells occurring in leaf explants of monoploid potato were the favored targets of T-DNA integration during transformation. Mutants obtained in these studies provide a useful resource for future genetic studies.