Photosynthesis controls of CO2 efflux from maize rhizosphere

The effects of different shading periods of maize plants on rhizosphere respiration and soil organic matter decomposition were investigated by using a ¹³C natural abundance and ¹⁴C pulse labeling simultaneously. ¹³C was a tracer for total C assimilated by maize during the whole growth period, and ¹⁴C was a tracer for recently assimilated C. CO₂ efflux from bare soil was 4 times less than the total CO₂ efflux from planted soil under normal lighting. Comparing to the normal lighting control (12/12 h day/night), eight days with reduced photosynthesis (12/36 h day/night period) and strongly reduced photosynthesis (12/84 h day/night period) resulted in 39% and 68% decrease of the total CO₂ efflux from soil, respectively. The analysis of ¹³C natural abundance showed that root-derived CO₂ efflux accounted for 82%, 68% and 56% of total CO₂ efflux from the planted soil with normal, prolonged and strongly prolonged night periods, respectively. Clear diurnal dynamics of the total CO₂ efflux from soil with normal day-night period as well as its strong reduction by prolonged night period indicated tight coupling with plant photosynthetic activity. The light-on events after prolonged dark periods led to increases of root-derived and therefore of total CO₂ efflux from soil. Any factor affecting photosynthesis, or substrate supply to roots and rhizosphere microorganisms, is an important determinant of root-derived CO₂ efflux, and thereby, total CO₂ efflux from soils. ¹⁴C labeling of plants before the first light treatment did not show any significant differences in the ¹⁴CO₂ respired in the rhizosphere between different dark periods because the assimilate level in the plants was high. Second labeling, conducted after prolonged night phases, showed higher contribution of recently assimilated C (¹⁴C) to the root-derived CO₂ efflux by shaded plants. Results from ¹³C natural abundance showed that the cultivation of maize on Chromic Luvisol decreased soil organic matter (SOM) mineralization compared to unplanted soil (negative priming effect). A more important finding is the observed tight coupling of the negative rhizosphere effect on SOM decomposition with photosynthesis.     

Process-based isotope partitioning of winter soil respiration in a subalpine ecosystem reveals importance of rhizospheric respiration

Deep snow in sub-alpine ecosystems may reduce or eliminate soil freezing, thus contributing to the potential for winter soil respiration to account for a significant fraction of annual CO₂ efflux to the atmosphere. Quantification of carbon loss from soils requires separation of respiration produced by roots and rhizosphere organisms from that produced by heterotrophic, decomposer organisms because the former does not result in a net loss of stored carbon. Our objective was to quantify winter soil respiration rates in a sub-alpine forest and meadow, and to partition that flux into its rhizosphere and heterotrophic components. We were particularly interested in comparing early winter soil respiration to late winter/early spring soil respiration of each component because previous work has shown a consistent increase in soil respiration of subalpine systems from early winter to late winter/spring. Field data on the total soil CO₂ flux and its carbon isotope composition were coupled with data from laboratory incubations using a novel process-based stable isotope mixing model implemented in a hierarchical Bayesian framework. We found that soil respiration generally increased from early to later winter and was greatest mid-summer. After correcting for the effect of wind on snowpack δ¹³C–CO₂, the δ¹³C of soil-respired CO₂ varied little over winter, and the contributions of rhizospheric (~35 %) and heterotrophic (~65 %) respiration were relatively constant. The significance of winter respiration from the rhizosphere and apparent coupling of increases in rhizospheric and heterotrophic respiration in late winter are likely to be important for predicting changes in soil carbon in sub-alpine ecosystems.     

Plant rhizosphere influence on microbial C metabolism: the role of elevated CO2, N availability and root stoichiometry

Microbial decomposer C metabolism is considered a factor controlling soil C stability, a key regulator of global climate. The plant rhizosphere is now recognized as a crucial driver of soil C dynamics but specific mechanisms by which it can affect C processing are unclear. Climate change could affect microbial C metabolism via impacts on the plant rhizosphere. Using continuous ¹³C labelling under controlled conditions that allowed us to quantify SOM derived-C in all pools and fluxes, we evaluated the microbial metabolism of soil C in the rhizosphere of a C4 native grass exposed to elevated CO₂ and under variation in N concentrations in soil and in plant root C:N stoichiometry. Our results demonstrated that this plant can influence soil C metabolism and further, that elevated CO₂ conditions can alter this role by increasing microbial C efficiency as indicated by a reduction in soil-derived C respiration per unit of soil C-derived microbial biomass. Moreover, under elevated CO₂ increases in soil N, and notably, root tissue N concentration increased C efficiency, suggesting elevated CO₂ shifted the stoichiometric balance so N availability was a more critical factor regulating efficiency than under ambient conditions. The root C:N stoichiometry effect indicates that plant chemical traits such as root N concentration are able to influence the metabolism of soil C and that elevated CO₂ conditions can modulate this role. Increased efficiency in soil C use was associated with negative rhizosphere priming and we hypothesize that the widely observed phenomenon of rhizosphere priming may result, at least in part, from changes in the metabolic efficiency of microbial populations. Observed changes in the microbial community support that shifting microbial populations were a contributing factor to the observed metabolic responses. Our case study points at greater efficiency of the SOM-degrading populations in a high CO₂, high N world, potentially leading to greater C storage of microbially assimilated C in soil.     

Model for rhizodeposition and CO2 efflux from planted soil and its validation by 14C pulse labelling of ryegrass

A model for rhizodeposition and root respiration was developed and parameterised based on ¹⁴C pulse labelling of Lolium perenne. The plants were grown in a two-compartment chamber on a loamy Haplic Luvisol under controlled laboratory conditions. The dynamics of ¹⁴CO₂ efflux from the soil and ¹⁴C content in shoots, roots, micro-organisms, dissolved organic carbon (DOC) and soil were measured during the first 11 days after labelling. Modelled parameters were estimated by fitting on measured ¹⁴C dynamics in the different pools. The model and the measured ¹⁴C dynamics in all pools corresponded well (r ²=0.977). The model describes well ¹⁴CO₂ efflux from the soil and ¹⁴C dynamics in shoots, roots and soil, but predicts unsatisfactorily the ¹⁴C content in micro-organisms and DOC. The model also allows for division of the total ¹⁴CO₂ efflux from the soil in ¹⁴CO₂ derived from root respiration and ¹⁴CO₂ derived from rhizomicrobial respiration by use of exudates and root residues. Root respiration and rhizomicrobial respiration amounted for 7.6% and 6.0% of total assimilated C, respectively, which accounts for 56% and 44% of root-derived ¹⁴CO₂ efflux from the soil planted with 43-day-old Lolium perenne, respectively. The sensitivity analysis has shown that root respiration rate affected the curve of ¹⁴CO₂ efflux from the soil mainly during the first day after labelling. The changes in the exudation rate influenced the ¹⁴CO₂ efflux later than first 24 h after labelling.     

Elevated CO2 and temperature impacts on different components of soil CO2 efflux in Douglas-fir terracosms

Although numerous studies indicate that increasing atmospheric CO₂ or temperature stimulate soil CO₂ efflux, few data are available on the responses of three major components of soil respiration [i.e. rhizosphere respiration (root and root exudates), litter decomposition, and oxidation of soil organic matter] to different CO₂ and temperature conditions. In this study, we applied a dual stable isotope approach to investigate the impact of elevated CO₂ and elevated temperature on these components of soil CO₂ efflux in Douglas-fir terracosms. We measured both soil CO₂ efflux rates and the ¹³C and ¹⁸O isotopic compositions of soil CO₂ efflux in 12 sun-lit and environmentally controlled terracosms with 4-year-old Douglas fir seedlings and reconstructed forest soils under two CO₂ concentrations (ambient and 200 ppmv above ambient) and two air temperature regimes (ambient and 4 °C above ambient). The stable isotope data were used to estimate the relative contributions of different components to the overall soil CO₂ efflux. In most cases, litter decomposition was the dominant component of soil CO₂ efflux in this system, followed by rhizosphere respiration and soil organic matter oxidation. Both elevated atmospheric CO₂ concentration and elevated temperature stimulated rhizosphere respiration and litter decomposition. The oxidation of soil organic matter was stimulated only by increasing temperature. Release of newly fixed carbon as root respiration was the most responsive to elevated CO₂, while soil organic matter decomposition was most responsive to increasing temperature. Although some assumptions associated with this new method need to be further validated, application of this dual-isotope approach can provide new insights into the responses of soil carbon dynamics in forest ecosystems to future climate changes.     

Investigation of photosynthate-C allocation 27 days after 13C-pulse labeling of Zea mays L. at different growth stages

Aims

Pulse labeling of crops using ¹³C is often employed to trace photosynthesized carbon (C) within crop-soil systems. However, few studies have compared the C distribution for different labeling periods. The overall aim of this study was to determine the length of the monitoring interval required after ¹³C-pulse labeling to quantify photosynthate C allocation into plant, soil and rhizosphere respiration pools for the entire growing season of maize (Zea mays L.).

Methods

Pot grown maize was pulse-labeled with ¹³CO₂ (98 at.?%) at the beginning of emergence, elongation, heading and grainfilling growth stages. The routing of ¹³C into shoot and root biomass, soil CO₂ flux and soil organic carbon (SOC) pools was monitored for 27 days after ¹³C-pulse labeling at the beginning of each growth stage.

Results

The majority of the ¹³C was recovered after 27 d in the maize shoots, i.e., 57 %, 53 %, 70 % and 80 %, at the emergence, elongation, heading, and grainfilling stages, respectively. More ¹³C was recovered in the root biomass at elongation (27 %) compared to the least at the grainfilling stage (3 %). The amount recovered in the soil was the smallest pool of ¹³C at emergence (2.3 %), elongation (3.8 %), heading and grainfilling (less than 2 %). The amount of ¹³C recovered in rhizosphere respiration, i.e. ¹³CO₂, was greatest at emergence (26 %), and similar at the elongation, heading and grainfilling stages (~16 %).

Conclusions

At least 24 days is required to effectively monitor the recovery of ¹³C after pulse labeling with ¹³CO₂ for maize in plant and soil pools. The recovery of ¹³C differed between growth stages and corresponded to the changing metabolic requirements of the plant, which indicated labeling for the entire growth season would more accurately quantify the C budget in plant-soil system.     

Spatial distribution of rhizodeposit carbon of maize (Zea mays L.) in soil aggregates assessed by multiple pulse 13C labeling in the field

Background and aims

Rhizosphere effect is controlled by spatial distribution of rhizodeposits, which may be influenced by soil aggregation and soil moisture regime in relation to water uptake by roots. The objectives of this study were to measure soil organic carbon (SOC) concentration and its δ¹³C abundance by aggregate size in the rooted bulk soil and by distance in the root-free soil vertically and horizontally away from roots, and to measure DOC concentration and its δ¹³C abundance in pore water in the rooted bulk soil after a seasonal pulse labelings of ¹³CO₂ to maize (Zea mays L.).

Methods

Pulse labeling was conducted in the field once a week for 11 weeks. Soil cells (50 mm in diameter and 100 mm long) mimicking root-free soils were imbedded vertically and horizontally 25–50 mm away from the main root of a maize crop. The rooted bulk soils were sampled to extract soil pore water at different suctions and to fractionate aggregates by wet sieving. The root-free soil cells were sliced by 1 mm intervals from the root end to 20 mm away. All the sampling was 12 days after the last labeling after the crop was harvested.

Results and discussion

The δ¹³C abundance before and after the continuous labeling was ?24.20?±?0.05?‰ and ?23.80?±?0.05?‰ in the rooted bulk soil. The labeling caused increases in δ¹³C abundance in all the aggregates in the rooted bulk soil and down to 14 mm away from the roots in both the root-free cells. The δ¹³C abundance was enriched in the >2 mm and 1–2 mm aggregates (?23.17?±?0.12?‰ and ?23.26?±?0.05?‰) though the SOC concentration was not different among the >0.25 mm aggregates, indicating that rhizodeposits or their metabolites were protected and distributed widely in whole soil through soil aggregation. The δ¹³C abundance in pore water (?24.0?±?0.01?‰) was much lower than those soil aggregates and greatest from the >2 μm soil pores though the DOC concentration was greater from the <20 μm soil pores. The δ¹³C abundance was in general greater in the horizontal cell than in the vertical cell. The δ¹³C abundance decreased with the increasing distance to the roots in the vertical cell and peaked at the 5 and 6 mm distance to the roots in the horizontal cell (?23.66?±?0.11?‰ and ?23.5?±?0.10?‰), possibly due to the drier condition unfavorable to microbial decomposition in the horizontal cell. The higher δ¹³C abundance in the horizontal cell than in the vertical cell was accompanied by a lower SOC concentration and a lower C: N ratio within 3 mm away from the roots, suggesting a stronger priming effect due to the longer residence time of rhizodeposits in the horizontal cell than in the vertical cell.

Conclusions

Rhizodeposits or their metabolites were protected during soil aggregation and distributed to 14 mm beyond the rhizosphere in the natural soil-plant system. This extension is of significance in regulating the formation of soil structure and the priming of soil organic matter during the whole life cycle of plants, which needs further study.     

Stable isotopic (δ13C and δ18O) signatures of biogenic calcretes marking discontinuity surfaces: a case study from Upper Cretaceous carbonates of central Dalmatia and eastern Istria,Croatia

Biogenic calcretes associated with a regional Cretaceous to Paleogene subaerial unconformity and an intraformational composite (polygenic) surface in Upper Cretaceous intra-platform peritidal successions in central Dalmatia and eastern Istria, Croatia (Adriatic-Dinaridic Carbonate Platform), were analyzed for their δ¹³C and δ¹⁸O signatures in order to provide insight into the conditions of subaerial exposure and calcrete development. The distinctly negative δ¹³C signatures of biogenic calcretes marking the regional subaerial unconformity differ considerably from the δ¹³C values of the host marine limestones. This indicates carbon isotope exchange of primary marine CaCO₃ with CO₂ released by root and rhizomicrobial respiration and subsequent precipitation of pedogenic calcrete. The range of δ¹³C (from ?13.1 to ?8.2 ‰ Vienna PeeDee Belemnite standard, VPDB) and δ¹⁸O (from ?10.1 to ?6.1 ‰ VPDB) values of calcretes are similar to those reported from calcretes elsewhere, and the δ¹³C values of biogenic calcretes with typical Microcodium aggregates (?13.1 to ?12.3 ‰ VPDB) at the ?ibenik locality are very close to, or at the lower limit of, values for soil carbonates formed in isotopic equilibrium with soil CO₂. These values are expected for authigenic pedogenic carbonates formed under the influence of C₃ plant communities, without influence from heavier carbon from pre-existing carbonate and lack of input of atmospheric CO₂. Such low δ¹³C values support the interpretation of Microcodium aggregates as being precipitated under a direct biological control within the soil, although the relationship between formation mechanisms and stable isotope signatures of Microcodium needs further investigation. The δ¹³C values (?4.4 to ?3.6 ‰ VPDB) of rhizogenic calcretes formed inside firmground Thalassinoides burrows of the composite surface at the ?ibenik locality are more negative than the δ¹³C values of the host marine limestones, which confirms that the composite surface went through a phase of meteoric pedo(dia)genesis. However, the overall δ¹³C values of calcretes are less negative than expected, which might reflect contamination from associated primary marine carbonate. This study represents the first detailed stable isotope investigation of calcretes from carbonate successions of the External Dinarides, and the results may be applied to discontinuities present in other shallow-water carbonate rock successions.     

Herbivore-induced changes in plant carbon allocation: assessment of below-ground C fluxes using carbon-14

Effects of above-ground herbivory on short-term plant carbon allocation were studied using maize (Zea mays) and a generalist lubber grasshopper (Romalea guttata). We hypothesized that above-ground herbivory stimulates current net carbon assimilate allocation to below-ground components, such as roots, root exudation and root and soil respiration. Maize plants 24 days old were grazed (c. 25–50% leaf area removed) by caging grasshoppers around individual plants and 18 h later pulse-labelled with¹⁴CO₂. During the next 8 h,¹⁴C assimilates were traced to shoots, roots, root plus soil respiration, root exudates, rhizosphere soil, and bulk soil using carbon-14 techniques. Significant positive relationships were observed between herbivory and carbon allocated to roots, root exudates, and root and soil respiration, and a significant negative relationship between herbivory and carbon allocated to shoots. No relationship was observed between herbivory and¹⁴C recovered from soil. While herbivory increased root and soil respiration, the peak time for¹⁴CO₂ evolved as respiration was not altered, thereby suggesting that herbivory only increases the magnitude of respiration, not patterns of translocation through time. Although there was a trend for lower photosynthetic rates of grazed plants than photosynthetic rates of ungrazed plants, no significant differences were observed among grazed and ungrazed plants. We conclude that above-ground herbivory can increase plant carbon fluxes below ground (roots, root exudates, and rhizosphere respiration), thus increasing resources (e.g., root exudates) available to soil organisms, especially microbial populations.     

Seasonal and daily time course of the 13C composition in soil CO2 efflux recorded with a tunable diode laser spectrophotometer (TDLS)

Temporal variations of carbon isotope composition of soil CO₂ efflux (F_S and δ¹³C_FS) at different time scales should reflect both temporal variations of the climate conditions that affect canopy functioning and temporal changes in the relative contribution of autotrophic respiration to total F_S. A tunable diode laser spectrophotometer (TDLS) was installed in the Hesse forest (northeast of France) early during the 2007 growing season to determine the seasonal and daily variability in δ¹³C_FS. This method, based on the measurement of the absorption of an infrared laser emission at specific wave lengths of the ¹³CO₂ and ¹²CO₂, allows the continuous monitoring of the two isotopologues. The concentrations of the two isotopologues in F_S were continuously monitored from June to November 2007 using chamber method and Keeling plots drawn from nocturnal accumulation of CO₂ below the canopy. These TDLS measurements and isotope ratio mass spectrometer based Keeling plots gave very similar values of δ¹³C_FS, showing the reliability of the TDLS system in this context. Results were analysed with regard to seasonal and daily changes in climatic and edaphic variables and compared with the δ¹³C of CO₂ respired by roots, litter and soil incubated under controlled conditions. Pronounced daily as well as seasonal variations in δ¹³C_FS were recorded (up to 1.5‰). The range of variation of δ¹³C_FS was of the same order of magnitude at both diurnal and seasonal scales. δ¹³C_FS observed in the field fluctuated between values of litter and of root respiration recorded during incubation, suggesting that temporal (and probably spatial) variations were associated with changes in the relative contribution of the two compartments during the day and during the season.     

Isotopic biosignatures in carbonate‐rich,cyanobacteria‐dominated microbial mats of the Cariboo Plateau,B.C.

Photosynthetic activity in carbonate‐rich benthic microbial mats located in saline, alkaline lakes on the Cariboo Plateau, B.C. resulted in pCO₂ below equilibrium and δ¹³C_DIC values up to +6.0‰ above predicted carbon dioxide (CO₂) equilibrium values, representing a biosignature of photosynthesis. Mat‐associated δ¹³C_carb values ranged from ~4 to 8‰ within any individual lake, with observations of both enrichments (up to 3.8‰) and depletions (up to 11.6‰) relative to the concurrent dissolved inorganic carbon (DIC). Seasonal and annual variations in δ¹³C values reflected the balance between photosynthetic ¹³C‐enrichment and heterotrophic inputs of ¹³C‐depleted DIC. Mat microelectrode profiles identified oxic zones where δ¹³C_carb was within 0.2‰ of surface DIC overlying anoxic zones associated with sulphate reduction where δ¹³C_carb was depleted by up to 5‰ relative to surface DIC reflecting inputs of ¹³C‐depleted DIC. δ¹³C values of sulphate reducing bacteria biomarker phospholipid fatty acids (PLFA) were depleted relative to the bulk organic matter by ~4‰, consistent with heterotrophic synthesis, while the majority of PLFA had larger offsets consistent with autotrophy. Mean δ¹³C_org values ranged from ?18.7 ± 0.1 to ?25.3 ± 1.0‰ with mean Δ¹³C_inorg‐org values ranging from 21.1 to 24.2‰, consistent with non‐CO₂‐limited photosynthesis, suggesting that Precambrian δ¹³C_org values of ~?26‰ do not necessitate higher atmospheric CO₂ concentrations. Rather, it is likely that the high DIC and carbonate content of these systems provide a non‐limiting carbon source allowing for expression of large photosynthetic offsets, in contrast to the smaller offsets observed in saline, organic‐rich and hot spring microbial mats.     

Root exclusion through trenching does not affect the isotopic composition of soil CO2 efflux

Disentangling the autotrophic and heterotrophic components of soil CO₂ efflux is critical to understanding the role of soil system in terrestrial carbon (C) cycling. In this study, we combined a stable C-isotope natural abundance approach with the trenched plot method to determine if root exclusion significantly affected the isotopic composition (δ¹³C) of soil CO₂ efflux (R_S). This study was performed in different forest ecosystems: a tropical rainforest and two temperate broadleaved forests, where trenched plots had previously been installed. At each site, R_S and its δ¹³C (δ¹³C_Rs) tended to be lower in trenched plots than in control plots. Contrary to R_S, δ¹³C_Rs differences were not significant. This observation is consistent with the small differences in δ¹³C measured on organic matter from root, litter and soil. The lack of an effect on δ¹³C_Rs by root exclusion could be from the small difference in δ¹³C between autotrophic and heterotrophic soil respirations, but further investigations are needed because of potential artefacts associated with the root exclusion technique.     

Species-specific differences in temporal and spatial variation in δ13C of plant carbon pools and dark-respired CO2 under changing environmental conditions

Stable carbon isotope signatures are often used as tracers for environmentally driven changes in photosynthetic δ¹³C discrimination. However, carbon isotope signatures downstream from carboxylation by Rubisco are altered within metabolic pathways, transport and respiratory processes, leading to differences in δ¹³C between carbon pools along the plant axis and in respired CO₂. Little is known about the within-plant variation in δ¹³C under different environmental conditions or between species. We analyzed spatial, diurnal, and environmental variations in δ¹³C of water soluble organic matter (δ¹³C_WSOM) of leaves, phloem and roots, as well as dark-respired δ¹³CO₂ (δ¹³C_res) in leaves and roots. We selected distinct light environments (forest understory and an open area), seasons (Mediterranean spring and summer drought) and three functionally distinct understory species (two native shrubs—Halimium halimifolium and Rosmarinus officinalis—and a woody invader—Acacia longifolia). Spatial patterns in δ¹³C_WSOM along the plant vertical axis and between respired δ¹³CO₂ and its putative substrate were clearly species specific and the most δ¹³C-enriched and depleted values were found in δ¹³C of leaf dark-respired CO₂ and phloem sugars, ~?15 and ~?33 ‰, respectively. Comparisons between study sites and seasons revealed that spatial and diurnal patterns were influenced by environmental conditions. Within a species, phloem δ¹³C_WSOM and δ¹³C_res varied by up to 4 ‰ between seasons and sites. Thus, careful characterization of the magnitude and environmental dependence of apparent post-carboxylation fractionation is needed when using δ¹³C signatures to trace changes in photosynthetic discrimination.     

Coupling of canopy gas exchange with root and rhizosphere respiration in a semi-arid forest

The strength of coupling between canopy gas exchange and root respiration was examined in ~15-yr-old ponderosa pine (Pinus ponderosa Doug. Ex Laws.) growing under seasonally drought stressed conditions. By regularly watering part of the root system to reduce tree water stress and measuring soil CO₂ efflux on the dry, distant side of the tree, we were able to determine the strength of the relationship between soil autotrophic (root and rhizosphere) respiration and changes in canopy carbon uptake and water loss by comparison with control trees (no watering). After ~40 days the soil CO₂ efflux rate, relative to pre-treatment conditions, was twice that of the controls. This difference, attributable to root and rhizosphere respiration, was strongly correlated with differences in transpiration rates between treatments (r² = 0.73, p<0.01). By the end of the period, transpiration of the irrigated treatment was twice that of controls. Periodic measurements of photosynthesis under non-light limited conditions paralleled the patterns of transpiration and were systematically higher in the irrigated treatment. We observed no evidence for a greater sensitivity of soil autotrophic respiration to temperature compared to the response of heterotrophic respiration to temperature; the Q₁₀ for total soil respiration was 1.6 (p>0.99) for both treatments. At the ecosystem scale, daily soil CO₂ efflux rate was linearly related to gross primary productivity (GPP) as measured by eddy-covariance technique (r² = 0.55, p<0.01), suggesting patterns of soil CO₂ release appear strongly correlated to recent carbon assimilation in this young pine stand. Collectively the observed relationships suggest some consideration should be given to the inclusion of canopy processes in future models of soil respiration.     

δ13C of CO2 respired in the dark in relation to δ13C of leaf metabolites: comparison between Nicotiana sylvestris and Helianthus annuus under drought

The variations of δ¹³C in leaf metabolites (lipids, organic acids, starch and soluble sugars), leaf organic matter and CO₂ respired in the dark from leaves of Nicotiana sylvestris and Helianthus annuus were investigated during a progressive drought. Under well‐watered conditions, CO₂ respired in the dark was ¹³C‐enriched compared to sucrose by about 4‰ in N. sylvestris and by about 3‰ and 6‰ in two different sets of experiments in H. annuus plants. In a previous work on cotyledonary leaves of Phaseolus vulgaris, we observed a constant ¹³C‐enrichment by about 6‰ in respired CO₂ compared to sucrose, suggesting a constant fractionation during dark respiration, whatever the leaf age and relative water content. In contrast, the ¹³C‐enrichment in respired CO₂ increased in dehydrated N. sylvestris and decreased in dehydrated H. annuus in comparison with control plants. We conclude that (i) carbon isotope fractionation during dark respiration is a widespread phenomenon occurring in C₃ plants, but that (ii) this fractionation is not constant and varies among species and (iii) it also varies with environmental conditions (water deficit in the present work) but differently among species. We also conclude that (iv) a discrimination during dark respiration processes occurred, releasing CO₂ enriched in ¹³C compared to several major leaf reserves (carbohydrates, lipids and organic acids) and whole leaf organic matter.     

Isotope discrimination by form IC RubisCO from Ralstonia eutropha and Rhodobacter sphaeroides,metabolically versatile members of ‘Proteobacteria’ from aquatic and soil habitats

RubisCO, the CO₂ fixing enzyme of the Calvin–Benson–Bassham (CBB) cycle, is responsible for the majority of carbon fixation on Earth. RubisCO fixes ¹²CO₂ faster than ¹³CO₂ resulting in ¹³C-depleted biomass, enabling the use of δ¹³C values to trace CBB activity in contemporary and ancient environments. Enzymatic fractionation is expressed as an ε value, and is routinely used in modelling, for example, the global carbon cycle and climate change, and for interpreting trophic interactions. Although values for spinach RubisCO (ε = ~29‰) have routinely been used in such efforts, there are five different forms of RubisCO utilized by diverse photolithoautotrophs and chemolithoautotrophs and ε values, now known for four forms (IA, B, D and II), vary substantially with ε = 11‰ to 27‰. Given the importance of ε values in δ¹³C evaluation, we measured enzymatic fractionation of the fifth form, form IC RubisCO, which is found widely in aquatic and terrestrial environments. Values were determined for two model organisms, the ‘Proteobacteria’ Ralstonia eutropha (ε = 19.0‰) and Rhodobacter sphaeroides (ε = 22.4‰). It is apparent from these measurements that all RubisCO forms measured to date discriminate less than commonly assumed based on spinach, and that enzyme ε values must be considered when interpreting and modelling variability of δ¹³C values in nature.     

C and N allocation in soil under ryegrass and alfalfa estimated by 13C and 15N labelling

Background and Aims

Below-ground translocated carbon (C) released as rhizodeposits is an important driver for microbial mobilization of nitrogen (N) for plants. We investigated how a limited substrate supply due to reduced photoassimilation alters the allocation of recently assimilated C in plant and soil pools under legume and non-legume species.

Methods

A non-legume (Lolium perenne) and a legume (Medicago sativa) were labelled with ¹⁵N before the plants were clipped or shaded, and labelled twice with ¹³CO₂ thereafter. Ten days after clipping and shading, the ¹⁵N and ¹³C in shoots, roots, soil, dissolved organic nitrogen (DON) and carbon (DOC) and in microbial biomass, as well as the ¹³C in soil CO₂ were analyzed.

Results

After clipping, about 50 % more ¹³C was allocated to regrowing shoots, resulting in a lower translocation to roots compared to the unclipped control. Clipping also reduced the total soil CO₂ efflux under both species and the ¹³C recovery of soil CO₂ under L. perenne. The ¹⁵N recovery increased in the shoots of M. sativa after clipping, because storage compounds were remobilized from the roots and/or the N uptake from the soil increased. After shading, the assimilated ¹³C was preferentially retained in the shoots of both species. This caused a decreased ¹³C recovery in the roots of M. sativa. Similarly, the total soil CO₂ efflux under M. sativa decreased more than 50 % after shading. The ¹⁵N recovery in plant and soil pools showed that shading has no effect on the N uptake and N remobilization for L. perenne, but, the ¹⁵N recovery increased in the shoot of M. sativa.

Conclusions

The experiment showed that the dominating effect on C and N allocation after clipping is the need of C and N for shoot regrowth, whereas the dominating effect after shading is the reduced substrate supply for growth and respiration. Only slight differences could be observed between L. perenne and M. sativa in the C and N distribution after clipping or shading.     

Modelling carbon isotope fractionation in tree rings based on effective evapotranspiration and soil water status

Environmental influences on carbon isotope fractionation in tree rings require further elucidation in order to use this parameter as a biological marker of climatic variations. δ¹³C values in tree-ring cellulose of beech (Fagus sylvatica L.) were analysed for the period from 1950 to 1990. A bioclimatic model of water balance was used to give the actual evapotranspiration as well as the soil water content on a daily basis. δ¹³C shows a significant decrease from –24·5‰ to –25‰ over this period. Internal CO₂ concentration changes from 200 to 220 ppm in relation with the rise of atmospheric CO₂. Beside a slight non-significant inter-individual variation, a large year-to-year variation exists. The relative extractable soil water of July, combined with the value of δ¹³C for the previous year, predicts as much as 70% of this variance. Air temperature or precipitation accounted for less variation. δ¹³C is strongly correlated with basal area increment, but appeared a more reliable indicator of water status at the stand level.     

Simulated chronic NO3− deposition reduces soil respiration in northern hardwood forests

Chronic N additions to forest ecosystems can enhance soil N availability, potentially leading to reduced C allocation to root systems. This in turn could decrease soil CO₂ efflux. We measured soil respiration during the first, fifth, sixth and eighth years of simulated atmospheric NO₃^? deposition (3 g N m^?2 yr^?1) to four sugar maple‐dominated northern hardwood forests in Michigan to assess these possibilities. During the first year, soil respiration rates were slightly, but not significantly, higher in the NO₃^?‐amended plots. In all subsequent measurement years, soil respiration rates from NO₃^?‐amended soils were significantly depressed. Soil temperature and soil matric potential were measured concurrently with soil respiration and used to develop regression relationships for predicting soil respiration rates. Estimates of growing season and annual soil CO₂ efflux made using these relationships indicate that these C fluxes were depressed by 15% in the eighth year of chronic NO₃^? additions. The decrease in soil respiration was not due to reduced C allocation to roots, as root respiration rates, root biomass, and root turnover were not significantly affected by N additions. Aboveground litter also was unchanged by the 8 years of treatment. Of the remaining potential causes for the decline in soil CO₂ efflux, reduced microbial respiration appears to be the most likely possibility. Documented reductions in microbial biomass and the activities of extracellular enzymes used for litter degradation on the NO₃^?‐amended plots are consistent with this explanation.     

Tree root and soil heterotrophic respiration as revealed by girdling of boreal Scots pine forest: extending observations beyond the first year

Limitations in available techniques to separate autotrophic (root) and soil heterotrophic respiration have hampered the understanding of forest C cycling. The former is here defined as respiration by roots, their associated mycorrhizal fungi and other micro‐organisms in the rhizosphere directly dependent on labile C compounds leaked from roots. In order to separate the autotrophic and heterotrophic components of soil respiration, all Scots pine trees in 900 m² plots were girdled to instantaneously terminate the supply of current photosynthates from the tree canopy to roots. Högberg et al. (Nature 411, 789–792, 2001) reported that autotrophic activity contributed up to 56% of total soil respiration during the first summer of this experiment. They also found that mobilization of stored starch (and likely also sugars) in roots after girdling caused an increased apparent heterotrophic respiration on girdled plots. Herein a transient increase in the δ¹³C of soil CO₂ efflux after girdling, thought to be due to decomposition of ¹³C‐enriched ectomycorrhizal mycelium and root starch and sugar reserves, is reported. In the second year after girdling, when starch reserves of girdled tree roots were exhausted, calculated root respiration increased up to 65% of total soil CO₂ efflux. It is suggested that this estimate of its contribution to soil respiration is more precise than the previous based on one year of observation. Heterotrophic respiration declined in response to a 20‐day‐long 6 °C decline in soil temperature during the second summer, whereas root respiration did not decline. This did not support the idea that root respiration should be more sensitive to variations in soil temperature. It is suggested that above‐ground photosynthetic activity and allocation patterns of recent photosynthates to roots should be considered in models of responses of forest C balances to global climate change.