The role of glacial cycles in promoting genetic diversity in the Neotropics: the case of cloud forests during the Last Glacial Maximum

The increasing aridity during the Last Glacial Maximum (LGM) has been proposed as a major factor affecting Neotropical species. The character and intensity of this change, however, remains the subject of ongoing debate. This review proposes an approach to test contrasting paleoecological hypotheses by way of their expected demographic and genetic effects on Neotropical cloud forest species. We reviewed 48 paleoecological records encompassing the LGM in the Neotropics. The records show contrasting evidence regarding the changes in precipitation during this period. Some regions remained fairly moist and others had a significantly reduced precipitation. Many paleoecological records within the same region show apparently conflicting evidence on precipitation and forest stability. From these data, we propose and outline two demographic/genetic scenarios for cloud forests species based on opposite precipitation regimes: the dry refugia and the moist forests hypotheses. We searched for studies dealing with the population genetic structure of cloud forest and other montane taxa and compared their results with the proposed models. To date, the few available molecular studies show insufficient genetic evidence on the predominance of glacial aridity in the Neotropics. In order to disentangle the climatic history of the Neotropics, the present study calls for a general multi‐disciplinary approach to conduct future phylogeographic studies. Given the contradictory paleoecological information, population genetic data on Neotropical cloud forest species should be used to explicitly test the genetic consequences of competing paleoecological models.     

Arabia's tallest trees: ecology,distribution and conservation status of the regionally endangered tree species Mimusops laurifolia

Mimusops laurifolia (Forssk.) Friis is the largest tree species in the Arabian Peninsula, and a characteristic species of the threatened southwest Arabian valley forest habitat. In order to understand the distribution and conservation status of M. laurifolia, this paper collates the historical records of M. laurifolia and compares them with recent survey data. This comparison highlights that the abundance of M. laurifolia has dramatically declined at sites that were previously considered important for this species. In Arabia, approximately 100 individuals of M. laurifolia remain at eleven localities. From their size, it is likely that many of these are extremely old trees, but there is currently little regeneration. The main threats to this species are the loss of valley forest habitat through overgrazing and road construction, overexploitation of M. laurifolia for wood as well as climate change. Based on these findings, we recommend that M. laurifolia should be classified as Endangered (EN) in the region on the IUCN red list. We recommend some basic conservation measures and identifies an urgent need for further research on the distribution, propagation and restoration of this species.     

Temporal genetic dynamics of reintroduced and translocated populations of the endangered golden lion tamarin (<Emphasis Type="Italic">Leontopithecus rosalia</Emphasis>)

Reintroductions—captive-born animals introduced into the species’ original distribution area—and translocations—free-living animals transferred to another location within the historical distribution area—are important conservation strategies for endangered species. Genetic analyses of 239 individuals from unmanaged, translocated and reintroduced populations of Leontopithecus rosalia were performed using 14 microsatellites. These samples were collected during two periods: (a) 1996–1997 (historic), when individuals were translocated and reintroduced into forest fragments in the lowland Atlantic Forest, and (b) 2007–09 (recent). We hypothesized that effective population size and genetic diversity would increase over time and that these management strategies would affect the resulting population genetic structure. We found trends indicating that the effective population size at the translocation site increased while that at the reintroduction sites diminished over time. The inbreeding coefficient of the translocated population diminished over time (from 0.38 to 0.03) and was much lower than that of the native (0.29) and reintroduced (0.13) recent populations. We observed a greater genetic admixture among the reintroduced sites on the historic sampling, as well as a strong genetic structure at the translocation site. In the recent sampling, the population structuring became more site-related suggesting low or inconsistent gene flow between sampling sites. This research highlights how conservation management decisions have an important influence on the genetic outcome of translocations and reintroductions. Future conservation planning should consider population genetic monitoring before and after management measures and maintain population connectivity thereafter to avoid the negative effects of a population size reduction.     

Please don't misuse the museum: ‘declines’ may be statistical

Detecting declines in populations at broad spatial scales takes enormous effort, and long‐term data are often more sparse than is desired for estimating trends, identifying drivers for population changes, framing conservation decisions, or taking management actions. Museum records and historic data can be available at large scales across multiple decades, and are therefore an attractive source of information on the comparative status of populations. However, changes in populations may be real (e.g. in response to environmental covariates) or resulting from variation in our ability to observe the true population response (also possibly related to environmental covariates). This is a (statistical) nuisance in understanding the true status of a population. Evaluating statistical hypotheses alongside more interesting ecological ones is important in the appropriate use of museum data. Two statistical considerations are generally applicable to use of museum records: first without initial random sampling, comparison with contemporary results cannot provide inference to the entire range of a species, and second the availability of only some individuals in a population may respond to environmental changes. Changes in the availability of individuals may reduce the proportion of the population that is present and able to be counted on a given survey event, resulting in an apparent decline even when population size is stable.     

The Wallacean Shortfall and the role of historical distribution records in the conservation assessment of an elusive Neotropical snake in a threatened landscape

Documenting species distribution is essential to extinction risk asessments and subsequent conservation actions. Historical records are thus essential to understand how species are distributed and how their range has changed over time. However, using historical records might contribute to overestimating the species current range and misrepresent their conservation status. Here, we illustrate the pitfalls of this approach using a widespread but elusive Neotropical snake species, Philodryas livida (Dipsadidae Bonaparte, 1838). We mapped occurrences of this species over time and calculated its Extent of Occurrence and Area of Habitat. Our results show that due to the intense, widespread anthropic land-use transformation since the discovery of P. livida in 1920, most historical localities are now likely unsuitable for its occurrence and both its current Extent of Occurrence and Area of Habitat become remarkably smaller (5.7% and 19.1% remaining, respectively) if only localities from the last 30 years are considered. Apart from the natural elusiveness of the species, intense habitat loss and fragmentation may also explain the low number of recent records of P. livida, all concentrated within or near protected areas, indicating a putative decline in range relevant to its conservation status. We thus highlight how failing to consider the date of records and the associated land-use change over time might underestimate species range reduction and thus threat status. We strongly encourage the inclusion of the date of each occurrence record in conservation assessments, as suggested by the IUCN’s mapping standards, such that historical records are carefully considered, especially in highly dynamic and threatened biomes such as the Cerrado savannas in Brazil.     

Competing conservation objectives for predators and prey: estimating killer whale prey requirements for Chinook salmon

Ecosystem-based management (EBM) of marine resources attempts to conserve interacting species. In contrast to single-species fisheries management, EBM aims to identify and resolve conflicting objectives for different species. Such a conflict may be emerging in the northeastern Pacific for southern resident killer whales (Orcinus orca) and their primary prey, Chinook salmon (Oncorhynchus tshawytscha). Both species have at-risk conservation status and transboundary (Canada-US) ranges. We modeled individual killer whale prey requirements from feeding and growth records of captive killer whales and morphometric data from historic live-capture fishery and whaling records worldwide. The models, combined with caloric value of salmon, and demographic and diet data for wild killer whales, allow us to predict salmon quantities needed to maintain and recover this killer whale population, which numbered 87 individuals in 2009. Our analyses provide new information on cost of lactation and new parameter estimates for other killer whale populations globally. Prey requirements of southern resident killer whales are difficult to reconcile with fisheries and conservation objectives for Chinook salmon, because the number of fish required is large relative to annual returns and fishery catches. For instance, a U.S. recovery goal (2.3% annual population growth of killer whales over 28 years) implies a 75% increase in energetic requirements. Reducing salmon fisheries may serve as a temporary mitigation measure to allow time for management actions to improve salmon productivity to take effect. As ecosystem-based fishery management becomes more prevalent, trade-offs between conservation objectives for predators and prey will become increasingly necessary. Our approach offers scenarios to compare relative influence of various sources of uncertainty on the resulting consumption estimates to prioritise future research efforts, and a general approach for assessing the extent of conflict between conservation objectives for threatened or protected wildlife where the interaction between affected species can be quantified.     

Does designation of protected areas ensure conservation of tree diversity in the Sudanian dry forest of Burkina Faso?

The importance of conservation status of the forest (protected versus unprotected) at two sites with differing human population density (high versus low) on the tree diversity of a Sudanian dry forest in Burkina Faso was studied. All woody species were recorded in 127 circular plots (area = 456.16 m²), and density, dominance, frequency, importance value indices and a variety of diversity measures were calculated to assess the species composition, structure and heterogeneity. A total of 69 species, representing 26 families and 52 genera, were found. Combretaceae, Leguminosae subfamily Caesalpinioideae and Rubiaceae were the dominant families. Neither human pressure nor forest conservation status significantly influenced the tree species richness. Stem density and basal area were significantly higher at the site with high population density than otherwise. Fisher’s diversity index revealed the unprotected forest at the site with low population density as the most diverse. We identified species with high conservation importance that should be enriched to maintain a viable population size. In conclusion, the current designation of protected areas seems inefficient at ensuring the conservation of tree diversity in the forest reserve. Thus, participatory conservation programme should be initiated.     

Habitat Degradation and Conservation Status Assessment of Gallinaceous Birds in the Trans-Himalayas,China

Abstract: The greatest concentration of Chinese Galliformes occurs in the Trans-Himalayas. We selected 4 northwestern Yunnan counties (Lijiang, Shangri-la, Deqin, and Weixi) in the Trans-Himalayas to assess the conservation status of 9 gallinaceous forest birds. We developed maps depicting recent forest cover and modeled habitat availability of each gallinaceous forest bird based on 3 factors that restrict its distribution: geographic location, elevation range, and forest coverage. The conservation status of 4 species was inadequate, because <10% of their respective potential habitats were within existing nature reserves. To predict the historic habitats of the species we studied, we also delineated a forest map from the late 1950s. We calculated the loss and fragmentation of potential habitats within the past 40 years as degree of habitat degradation. Our results showed that all 9 species became reduced and fragmented of their potential habitats from the late 1950s to 2002. Assessing habitat degradation and conservation status of wild species could help identify the threatened species with poor protection and degraded habitats, thereby warranting more attention in future conservation strategies. To protect those threatened species, it is urgent that the government should design new nature reserves to fill the conservation gaps, and enlarge and strengthen the management of existing natural reserves to reduce effects of human activities on their habitats.     

The critically endangered Asiatic cheetah <Emphasis Type="Italic">Acinonyx jubatus venaticus</Emphasis> in Iran: a review of recent distribution,and conservation status

Considerable effort has been put into conservation of the critically endangered Asiatic cheetah Acinonyx jubatus venaticus in Iran during the past few decades, and a thorough review of the species’ status, demography, range and conservation is provided here. We collated a large dataset of all verified occurrence data, photographic records and mortality cases since 1980 throughout the species’ range in Iran. Currently, the cheetah is distributed throughout the arid landscapes of the eastern half of Iran, but the limits of its current and past range as well as population trends are uncertain. Surveys of nearly 40 different areas resulted in 18 localities with confirmed presence of cheetahs in recent years. Camera trapping has been an effective tool to provide evidence of presence and status of cheetahs, revealing the species’ extremely low density and long inter-reserve movements. Together with photographic records, a total of 82 different cheetahs were detected during the 2000s in Iran. Protection status in most areas has been elevated by the Iran government. Asiatic cheetahs are highly vulnerable to extinction, mainly due to causalities mediated by herder persecution, poaching and road collisions as well as prey and habitat loss. Some efforts have been made to address these threats, but range expansion in recent years is a result of greater survey effort, rather than population recovery. We suggest that, despite conservation investment of the last 15 years, the species remains critically endangered on the verge of extinction.     

Genetic structure, phylogeography and demography of two ground-beetle species endemic to the Tenerife laurel forest (Canary Islands)

The volcanic island of Tenerife (Canary archipelago) was formerly covered at 600-1200 m above sea level on most of its northern side by a cloud forest holding much of the endemic insect fauna. In the most significant surviving patches of this laurel forest at the eastern and western tips of the island occur two forest-specialist, closely related species of Eutrichopus (Coleoptera, Carabidae); here we present data on mitochondrial DNA variation among populations of these species. In total, 116 individuals from 16 localities were sampled and a 638 bp fragment of the cytochrome oxidase subunit II gene was sequenced, obtaining evidence for two distinct evolutionary lineages, in accordance with morphological and biogeographical data. Volcanic events at approximately 0.7 Ma might be responsible for vicariance and the fragmentation of the geographical range of an ancestral species, causing the establishment of two matrilineal lineages. Using nested clade and historical demography analyses we infer past cycles of demographic bottlenecks followed by population expansion, mostly in agreement with the geological time scale of volcanic events. Recent trends, however, refer to fragmentation of the cloud forest due to human intervention.     

A Potential Distribution Model and Conservation Plan for the Critically Endangered Ecuadorian Capuchin, Cebus albifrons aequatorialis

Conservation actions that effectively and efficiently target single, highly threatened species require current data on the species’ geographic distribution and environmental associations. The Ecuadorian capuchin (Cebus albifrons aequatorialis) is a critically endangered primate found only in the fragmented forests of western Ecuador and northern Peru, which are among the world’s most severely threatened ecosystems. We use the MAXENT species distribution modeling method to model the potential distribution and environmental associations of Cebus albifrons aequatorialis, using all known presence localities recorded within the last 2 decades as well as 13 climate, topography, vegetation, and land-use data sets covering the entire geographic range of the subspecies. The environmental conditions that our model predicted to be ideal for supporting Cebus albifrons aequatorialis included ≥20% tree cover, mild temperature seasonality, annual precipitation <2000 mm, and low human population density. Our model identified 5028 km² of suitable habitat remaining, although many of these forest fragments are unprotected and are unlikely to support extant populations. Using the median population density across all sites for which data are available, we estimate the total carrying capacity of the remaining habitat to be 12,500 total individuals. The true number of remaining individuals is likely to be considerably lower due to anthropogenic factors. We highlight four critical regions of high predicted suitability in western Ecuador and northern Peru on which immediate conservation actions should focus, and we lay out clear priorities to guide conservation actions for ensuring the long-term survival of this gravely threatened and little known primate.     

Genetic Variation in Remnant Populations of the Woolly Spider Monkey (Brachyteles arachnoides)

The muriqui or woolly spider monkey (Brachyteles arachnoids) is an endangered primate endemic to the Atlantic Forest of Brazil, <5% of which remains. The known muriqui population consists of <700 individuals separated into approximately 15 geographically isolated forest fragments. I present data on the distribution of genetic variation within and between two such remnant populations (FE and FBR) and summarize the implications of these results for long-range management of species genetic diversity. Eleven of 32 allozyme loci were polymorphic, representing an overall level of polymorphism of 34.4% and a mean heterozygosity per locus of 11%. Both values are among the highest reported for New World monkeys. Genetic differentiation between the two localities is highly significant (F_ST = 0.413, p < 0.001). Genetic distance between them is an order of magnitude greater than that between other populations of platyrrhine subspecies, but this could be an artifact of the small sample size from FBR. High levels of genetic diversity apparently characteristic of this species persist because (1) fragmentation and size reduction of muriqui populations has occurred very rapidly relative to the muriqui life span—although both polymorphism and heterozygosity were lost between generations in the largest population, the high genetic diversity present in the parent population was still in evidence; and (2) genetic diversity before population fragmentation by human activity was not distributed uniformly throughout the species' historic distribution. Thus, remnant muriqui populations are important genetic reservoirs of alleles that are unique or rare in the species gene pool as a whole. These results emphasize the need for the integration of conservation management efforts throughout the species range.     

The Vanishing De Brazza's Monkey (Cercopithecus neglectus Schlegel) in Kenya

We conducted a trail survey of De Brazza's monkey (Cercopithecus neglectus) on Mt. Elgon and the Cherangani Hills between October 1994 and February 1995. The objectives were to assess the status and distribution of the species and its habitats and to formulate recommendations on its conservation. We counted a total of 49 monkeys: 3 groups and 6 lone individuals near Kimothon River (Mt. Elgon) and 4 groups and 6 lone individuals at Kapolet Forest Reserve and its environs (Cherangani Hills). The mean group size is 6.6. Wanton habitat destruction was evident in all the forest habitats. The species now inhabits unprotected remnant strips of riverine forest. Furthermore, the Kapolet Forest Reserve offers little or no protection to De Brazza's monkeys or their habitat. Translocation of the monkeys from unprotected areas to a protected habitat is recommended as an urgent conservation measure to save the De Brazza's population in Mt. Elgon and the Cherangani areas of Kenya.     

The incidence and implications of clouds for cloud forest plant water relations

Although clouds are the most recognisable and defining feature of tropical montane cloud forests, little research has focussed on how clouds affect plant functioning. We used satellite and ground‐based observations to study cloud and leaf wetting patterns in contrasting tropical montane and pre‐montane cloud forests. We then studied the consequences of leaf wetting for the direct uptake of water accumulated on leaf surfaces into the leaves themselves. During the dry season, the montane forest experienced higher precipitation, cloud cover and leaf wetting events of longer duration than the pre‐montane forest. Leaf wetting events resulted in foliar water uptake in all species studied. The capacity for foliar water uptake differed significantly between the montane and pre‐montane forest plant communities, as well as among species within a forest. Our results indicate that foliar water uptake is common in these forest plants and improves plant water status during the dry season.     

Mitochondrial DNA suggests independent evolutionary history and population decline of the Menzbir’s pipit (Anthus [gustavi] menzbieri)

In this study we use mtDNA ND2 gene (1041 bp) to evaluate the relationship between Menzbir’s (Anthus [gustavi] menzbieri) and Pechora (A. [g.] gustavi) pipits. Menzbir’s pipit is listed in the regional Red Data Book as a distinct, rare species with a small range. We obtained 18 Pechora pipit samples from two localities and 8 Menzbir’s pipit samples from a single locality. Sequences of the two taxa appear reciprocally monophyletic and are separated by 6 substitutions (0.6% divergence). Differences between the taxa explained 62.4% of the variation in our dataset. Differences among individuals within localities explained 34.8%, whereas differences between the two Pechora pipit localities explained only 2.8%. Mismatch distributions suggest that unlike the Pechora pipit localities, which either have experienced recent population growth or sustain a stable population size, the Menzbir’s pipit population may be declining. Our results suggest distinct taxonomic and conservation status for the Menzbir’s pipit.     

Long-term population trends of Sooty Terns <Emphasis Type="Italic">Onychoprion fuscatus</Emphasis>: implications for conservation status

Seabirds have suffered dramatic declines in population over recent decades. The most abundant seabirds of tropical oceans are Sooty Terns Onychoprion fuscatus and they have an IUCN Red List category of ‘Least Concern’. Ascension Island has the largest colony of Sooty Terns in the Atlantic Ocean and censuses between 1990 and 2013 have shown that its population size is static. In this study we have used historical data and recent censuses to describe the population status of Sooty Terns on Ascension Island over a century. We show that the breeding population contained over 2 million individuals in the 1870s and remained at this level for at least 70 years. However, the population declined from >2 million birds in 1942 to 350,000 birds by 1990. The population trend spanning a period equivalent to three generations of the species (63 years; 1942–2005) showed an approximate 84% decline in population size. Using IUCN criteria this suggests that Sooty Terns on Ascension could be considered ‘Critically Endangered’. We conclude that a re-evaluation of Sooty Tern conservation status is necessary at the local level and possibly globally. Our study highlights that for long-lived species historic demographic data should be considered when determining conservation status.     

Distribution,Demography, and Conservation of Lion-tailed Macaques (Macaca silenus) in the Anamalai Hills Landscape,Western Ghats,India

The status of the endemic and endangered lion-tailed macaque (Macaca silenus) has not been properly assessed in several regions of the Western Ghats of southern India. We conducted a study in Parambikulam Forest Reserve in the state of Kerala to determine the distribution, demography, and status of lion-tailed macaques. We laid 5km² grid cells on the map of the study area (644km²) and made four replicated walks in each grid cell using GPS. We gathered data on lion-tailed macaque group locations, demography, and site covariates including trail length, duration of walk, proportion of evergreen forest, height of tallest trees, and human disturbance index. We also performed occupancy modeling using PRESENCE ver. 3.0. We estimated a minimum of 17 groups of macaques in these hills. Low detection and occupancy probabilities indicated a low density of lion-tailed macaques in the study area. Height of the tallest trees correlated positively whereas human disturbance and proportion of evergreen forest correlated negatively with occupancy in grid cells. We also used data from earlier studies carried out in the surrounding Anamalai Tiger Reserve and Nelliyampathy Hills to discuss the conservation status in the large Anamalai Hills Landscape. This landscape harbors an estimated population of 1108 individuals of lion-tailed macaques, which is about one third of the entire estimated wild population of this species. A conservation plan for this landscape could be used as a model for conservation in other regions of the Western Ghats.     

Population dynamics of the rat Microryzomys minutus (Rodentia: Muridae) in the Venezuelan Andes

The population dynamics of the small forest rice rat Microryzomys minutus, a murid rodent that occurs in the high altitudes of the northern and central Andes, was studied in disturbed and primary environments in a cloud forest of the Venezuelan Andes (Juan Pablo Pe?aloza National Park, 8 degrees 11'N, 71 degrees 49'W). We collected 121 animals (66 female female and 55 male male) between 1995 and 1998, using pitfall traps with formalin. Adult males were heavier than adult females. Relative abundance was much greater in the disturbed environments (over 10 individuals in some periods) than in the primary cloud forest: 4-8 individuals. In the disturbed environments, the rats were extremely abundant in the first sampling period, and less frequent afterwards. In the cropland, abundance showed some fluctuations during the study and displayed two small abundance peaks in March-June 1997 and 1998. In the mined area, the rats had irregular fluctuations until March-June 1997 and were not recorded in July-October 1997. The occurrence of this rat in both disturbed and natural habitats confirms the wide ecological tolerance of this species.     

How heterogeneous are the cloud forest communities in the mountains of central Veracruz, Mexico?

The montane forest in central Veracruz, Mexico is a hotspot of biodiversity. We asked whether lower and upper montane forests could be distinguished in this ecoregion. Variables of vegetation and seasonality in precipitation were tested across 14 sites between 1,250- and 2,550-m elevations. A total of 1,639 individuals and 128 tree species was recorded. There was a unimodal pattern in the richness of species, genera, and families; their richness was positively correlated with precipitation in the wettest quarter of the year, though there were no differences in the basal area and density. Rarefaction, species turnover, nonmetric multidimensional scaling, and a cluster histogram suggest two major groups: lower elevation forests that are less diverse, have low beta diversity and are more similar in composition, with Clethra macrophylla, Liquidambar styraciflua, and Quercus lancifolia as indicator species; and higher elevation forests that are more diverse, have high species turnover, and include forests with Quercus corrugata and Prunus rhamnoides, and forests with Fagus grandifolia, Persea americana, and Ternstroemia sylvatica as indicator species. However, other communities (an Oreomunnea mexicana at the upper site, and a limestone site in the lower forests), exemplify the high regional heterogeneity. We conclude that elevation and seasonality in precipitation produce a directional change in richness and indicator species, but not in vegetation structure. Lower montane forests differed from cloud forests at upper elevations. However, other factors should be included—mainly biogeographic affinities, historic and recent anthropogenic disturbance—to conclusively distinguish them. Montane forest can still be considered very heterogeneous and very high in beta diversity.