Preparation and characterization of gas-filled liposomes: can they improve oil recovery?

Although well known for delivering various pharmaceutical agents, liposomes can be prepared to entrap gas rather than aqueous media and have the potential to be used as pressure probes in magnetic resonance imaging (MRI). Using these gas-filled liposomes (GFL) as tracers, MRI imaging of pressure regions of a fluid flowing through a porous medium could be established. This knowledge can be exploited to enhance recovery of oil from the porous rock regions within oil fields. In the preliminary studies, we have optimized the lipid composition of GFL prepared using a simple homogenization technique and investigated key physico-chemical characteristics (size and the physical stability) and their efficacy as pressure probes. In contrast to the liposomes possessing an aqueous core which are prepared at temperatures above their phase transition temperature (T(c)), homogenization of the phospholipids such as 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) or 1,2-distearoyl-sn-glycero-3-phosphocoline (DSPC) in aqueous medium below their T(c) was found to be crucial in formation of stable GFL. DSPC based preparations yielded a GFL volume of more than five times compared to their DPPC counter part. Although the initial vesicle sizes of both DSPC and DPPC based GFL were about 10 microm, after 7 days storage at 25 degrees C, the vesicle sizes of both formulations significantly (p < 0.05) increased to 28.3 +/- 0.3 mum and 12.3 +/- 1.0 microm, respectively. When the DPPC preparation was supplemented with cholesterol at a 1:0.5 or 1:1 molar ratio, significantly (p < 0.05) larger vesicles were formed (12-13 microm), however, compared to DPPC only vesicles, both cholesterol supplemented formulations displayed enhanced stability on storage indicating a stabilizing effect of cholesterol on these gas-filled vesicles. In order to induce surface charge on the GFL, DPPC and cholesterol (1: 0.5 molar ratio) liposomes were supplemented with a cationic surfactant, stearylamine, at a molar ratio of 0.25 or 0.125. Interestingly, the zeta potential values remained around neutrality at both stearylamine ratios suggesting the cationic surfactant was not incorporated within the bilayers of the GFL. Microscopic analysis of GFL confirmed the presence of spherical structures with a size distribution between 1-8 microm. This study has identified that DSPC based GFL in aqueous medium dispersed in 2% w/v methyl cellulose although yielded higher vesicle sizes over time were most stable under high pressures exerted in MRI.     

Social conflict models: can they inform us about human psychopathology?

Social conflict models have been proposed as a powerful way to investigate basic questions of how brain and behavior are altered by social experience. Social defeat, in particular, appears to be a major stressor for most species, and in humans, this stressor is thought to play an important role in the onset of a variety of psychiatric disorders including depression and post-traumatic stress disorder. Aggressive experience, on the other hand, may promote disorders involving inappropriate aggression and violence. Current research using animal models of social conflict involves multiple levels of analysis from genetic and molecular to systems and overt behavior. This review briefly examines a variety of these animal models of social conflict in order to assess whether they are useful for advancing our understanding of how experience can shape brain and behavior and for translating this information so that we have the potential to improve the quality of life of individuals with mental illness and behavioral disorders.     

Oxides of nitrogen and ozone: can our plants survive?

The authoritative talk by Professor Fowler (Fowler et al ., 1998), emphasized the huge increase in the rate of NO_x (NO and NO₂) emissions into the atmosphere due to fossil fuel combustion, from 1 Tg N y⁻¹ to over 20 Tg N y⁻¹ during the 100 yr between 1880 and 1980. He went on to predict that this rate of emission from anthropogenic sources would increase to 46 Tg N y⁻¹ by the year 2025. In addition, NO can also be released from the soil following microbial action, a process that is very dependent upon soil temperature, nitrogen availability and water content. Later in the meeting, Professor Raven (Raven & Yin, 1998) pointed out that terrestrial plants, though not necessarily each individual species, have over the past 450 million yr coped with large changes in nitrogenous compounds in the environment. Nevertheless, this is no basis for complacency about the current situation because the rates of change caused by man's activities are probably unprecedented. Furthermore, the fact that terrestrial plant life in some form can continue, despite massive changes in environmental chemistry, does not necessarily indicate that the systems on which we ourselves are dependent will be conserved.     

Inside the guts of wood-eating catfishes: can they digest wood?

To better understand the structure and function of the gastrointestinal (GI) tracts of wood-eating catfishes, the gross morphology, length, and microvilli surface area (MVSA) of the intestines of wild-caught Panaque nocturnus, P. cf. nigrolineatus “Marañon”, and Hypostomus pyrineusi were measured, and contrasted against these same metrics of a closely related detritivore, Pterygoplichthys disjunctivus. All four species had anatomically unspecialized intestines with no kinks, valves, or ceca of any kind. The wood-eating catfishes had body size-corrected intestinal lengths that were 35% shorter than the detritivore. The MVSA of all four species decreased distally in the intestine, indicating that nutrient absorption preferentially takes place in the proximal and mid-intestine, consistent with digestive enzyme activity and luminal carbohydrate profiles for these same species. Wild-caught Pt. disjunctivus, and P. nigrolineatus obtained via the aquarium trade, poorly digested wood cellulose (<33% digestibility) in laboratory feeding trials, lost weight when consuming wood, and passed stained wood through their digestive tracts in less than 4 h. Furthermore, no selective retention of small particles was observed in either species in any region of the gut. Collectively, these results corroborate digestive enzyme activity profiles and gastrointestinal fermentation levels in the fishes’ GI tracts, suggesting that the wood-eating catfishes are not true xylivores such as beavers and termites, but rather, are detritivores like so many other fishes from the family Loricariidae.     

Challenges of the utilization of wood polymers: how can they be overcome?

Diminishing fossil fuel resources as well as growing environmental and energy security concerns, in parallel with growing demands on raw materials and energy, have intensified global efforts to utilize wood biopolymers as a renewable resource to produce biofuels and biomaterials. Wood is one of the most abundant biopolymer composites on earth that can be converted into biofuels as well as used as a platform to produce bio-based materials. The major biopolymers in wood are cellulose, hemicelluloses, and lignin which account for >90% of dry weight. These polymers are generally associated with each other in wood cell walls resulting in an intricate and dynamic cell wall structure. This mini-review provides an overview of major wood biopolymers, their structure, and recent developments in their utilization to develop biofuels. Advances in genetic modifications to overcome the recalcitrance of woody biomass for biofuels are discussed and point to a promising future.     

Mitigating human disturbance: can protection influence trajectories of recovery in benthic assemblages?

1. Understanding whether Marine Protected Areas (MPAs) can be considered as a suitable tool for restoring the structure and function of populations and assemblages is urgently needed to achieve an effective policy of mitigation of human impact in coastal management. However, to date, the role played by MPAs in enhancing ecosystems resilience has been more advocated than unambiguously documented. 2. This study was designed to test whether full protection in marine reserves facilitates recovery of benthos impacted by the date mussel Lithophaga lithophaga fishery, one of the most harmful human activities affecting subtidal rocky habitats in the Mediterranean Sea. 3. The effects of this destructive fishery were reproduced at one fully protected location (P) and at two unprotected control locations (Cs) in the SW Mediterranean Sea. At each location, three plots (4 m2) of rocky surface at 4-6 m depth were disturbed experimentally, while another three plots served as reference. In each plot, the species composition and relative cover of the sessile benthic assemblages were sampled photographically on each of five occasions during a period of 20 months. 4. Over and above variation in habitat features among locations, multivariate and univariate analyses revealed significant differences between P-vs.-Cs in patterns of assemblage recovery and showed that, at the fully protected location, recovery was faster than at the unprotected control locations. 5. Our results suggest that MPAs have the potential to change the trajectories of recovery of disturbed assemblages by accelerating the processes of recolonization and call for further investigation to identify the specific mechanisms underlying increased resilience.     

How can river-estuarine planktonic copepods survive river floods?

Distribution of brackish-water zooplankton was surveyed in the Chikugo River estuary, Japan, at 3-h intervals for 24h, including several hours when the river was heavily flooded because of rainfall and discharge from an upstream dam. The populations of the dominant copepods Pseudodiaptomus inopinus and Sinocalanus sinensis were concentrated in the mixing zone of the salt wedge before river flooding. During the period of flooding, they were almost completely swept out from the river, but examination of water trapped by a sediment grab sampler revealed that adults of Pseudodiaptomus inopinus were aggregated immediately above the bottom of the submerged channel outside the river mouth. After the flood, aggregations of both species appeared again in the river together with the salt wedge, and the proportion of adults in the aggregations became significantly higher than before. These results suggest that immature copepods suffer population losses through river flooding, but that the copepods can survive such flooding by means of both behavioral and reproductive mechanisms; that is, adult copepods maintain their position on the bottom of submerged channels outside the river mouth during a river flood and replace the population loss through reproduction after the flood. Channels outside river mouths are thus regarded as important topographic refuges for river-estuarine zooplankton to survive a flood.     

Environmental variability and fisheries: what can models do?

This review is based on 58 climate-fisheries models published over the last 28 years that describe the impacts of fishery pressure and environmental variability on populations and ecosystems and include basic principles of population dynamics. It points out that the incorporation of environmental factors in fishery models has already been done and is of great importance for future models used in the assessment of marine resources. The work is guided by the questions to what extent have these models a) enhanced our understanding of the interrelationships between the environment, the fishery and the state of the exploited resources and b) helped to improve the prediction of population dynamics and the assessment of marine resources. For each of the six most commonly used model categories a case study is critically analyzed. The problems of “breaking relationships” between environmental factors and the biological response used in models, the trade-off between model complexity (realism) and simplicity (data availability) and the potential of multivariate climate indices for forecasting ecosystem states and for use as proxies for combined models are discussed, as are novel non-linear and spatially explicit modeling approaches. Approaches differ in terms of model complexity, use of linear or non-linear equations, number of parameters, forecast time horizon and type of resource modelled. A majority of the models were constructed for fish and invertebrate stocks of the northeast Pacific and the epicontinental seas of the Atlantic, reflecting the advancement of fisheries science in these regions. New, in parts highly complex models and sophisticated approaches were identified. The reviewed studies demonstrate that the performance of fished stocks can better be described if environmental or climatic variability is incorporated into the fisheries models. We conclude that due to the already available knowledge, the greatly enhanced computer power, new methods and recent findings of large-scale climatic/oceanographic cycles, fisheries modeling should progress greatly in the coming years.     

Are comparisons of species distribution models biased? Are they biologically meaningful?

A major problem in ecology is to understand how environmental requirements change over space and time. To this end, numerous authors have attempted to use comparisons of species’ distributions as a surrogate for comparisons of environmental requirements. Unfortunately, it is currently unclear when comparisons of species’ distributions produce reliable inferences about changes in environmental requirements. To address this problem, I develop an analytic model that identifies the conditions under which a comparison of species’ distribution models can serve as surrogate for a comparison of environmental requirements. This work demonstrates that 1) comparisons of species’ distributions typically produce biased comparisons of environmental requirements, 2) assuming distribution models are fit appropriately, it is possible to compare environmental requirements of distinct taxa, 3) there are multiple biologically relevant questions we can address using comparisons of distribution models, with each question corresponding to a distinct measure of the difference between distribution models. By developing an analytic model for comparisons of species’ distributions this work helps to clarify and remedy poorly understood sources of error associated with existing methods.     

Lungs of the first amniotes: why simple if they can be complex?

We show—in contrast to the traditional textbook contention—that the first amniote lungs were complex, multichambered organs and that the single-chambered lungs of lizards and snakes represent a secondarily simplified rather than the plesiomorphic condition. We combine comparative anatomical and embryological data and show that shared structural principles of multichamberedness are recognizable in amniotes including all lepidosaurian taxa. Sequential intrapulmonary branching observed during early organogenesis becomes obscured during subsequent growth, resulting in a secondarily simplified, functionally single-chambered lung in lepidosaurian adults. Simplification of pulmonary structure maximized the size of the smallest air spaces and eliminated biophysically compelling surface tension problems that were associated with miniaturization evident among stem lepidosaurmorphs. The remaining amniotes, however, retained the multichambered lungs, which allowed both large surface area and high pulmonary compliance, thus initially providing a strong selective advantage for efficient respiration in terrestrial environments. Branched, multichambered lungs instead of simple, sac-like organs were part and parcel of the respiratory apparatus of the first amniotes and pivotal for their success on dry land, with the sky literally as the limit.     

Mechanosensitive channels: what can they do and how do they do it?

While mechanobiological processes employ diverse mechanisms, at their heart are force-induced perturbations in the structure and dynamics of molecules capable of triggering subsequent events. Among the best characterized force-sensing systems are bacterial mechanosensitive channels. These channels reflect an intimate coupling of protein conformation with the mechanics of the surrounding membrane; the membrane serves as an adaptable sensor that responds to an input of applied force and converts it into an output signal, interpreted for the cell by mechanosensitive channels. The cell can exploit this information in a number of ways: ensuring cellular viability in the presence of osmotic stress and perhaps also serving as a signal transducer for membrane tension or other functions. This review focuses on the bacterial mechanosensitive channels of large (MscL) and small (MscS) conductance and their eukaryotic homologs, with an emphasis on the outstanding issues surrounding the function and mechanism of this fascinating class of molecules.     

What can we teach Drosophila? What can they teach us?

A number of single gene mutations dramatically reduce the ability of fruit flies to learn or to remember. Cloning of the affected genes implicated the adenylyl cyclase second-messenger system as key in learning and memory. The expression patterns of these genes, in combination with other data, indicates that brain structures called mushroom bodies are crucial for olfactory learning. However, the mushroom bodies are not dedicated solely to olfactory processing; they also mediate higher cognitive functions in the fly, such as visual context generalization. Molecular genetic manipulations, coupled with behavioral studies of the fly, will identify rudimentary neural circuits that underly multisensory learning and perhaps also the circuits that mediate more-complex brain functions, such as attention.     

Are microorganisms everywhere they can be?

Baas-Becking is famously attributed with the conjecture that ‘everything is everywhere, but the environment selects’. Although this aphorism is largely challenged by microbial biogeographical data, even weak versions of the claim leave unanswered the question about whether all environments that could theoretically support life contain life. In the last decade, the discovery of thermally sterilized habitable environments disconnected from inhabited regions, and habitats within organisms such as the sterile, but habitable human fetal gut, suggest the existence of a diversity of macroscopic habitable environments apparently devoid of actively metabolizing or reproducing life. Less clear is the status of such environments at the micron scale, for example, between colonies of organisms within rock interstices or on and within other substrates. I discuss recent evidence for these types of environments. These environments have practical uses in: (i) being negative controls for understanding the role of microbial processes in geochemical cycles and geological processes, (ii) yielding insights into the extent to which the biosphere extends into all spaces it theoretically can, (iii) suggesting caution in interpreting the results of life detection instrumentation, and (iv) being useful for establishing the conditions for the origin of life and its prevalence on other planetary bodies.     

Whales in the carbon cycle: can recovery remove carbon dioxide?

The great whales (baleen and sperm whales), through their massive size and wide distribution, influence ecosystem and carbon dynamics. Whales directly store carbon in their biomass and contribute to carbon export through sinking carcasses. Whale excreta may stimulate phytoplankton growth and capture atmospheric CO₂; such indirect pathways represent the greatest potential for whale-carbon sequestration but are poorly understood. We quantify the carbon values of whales while recognizing the numerous ecosystem, cultural, and moral motivations to protect them. We also propose a framework to quantify the economic value of whale carbon as populations change over time. Finally, we suggest research to address key unknowns (e.g., bioavailability of whale-derived nutrients to phytoplankton, species- and region-specific variability in whale carbon contributions).