Abundance of Diurnal Primates in Mwanihana Forest, Udzungwa Mountains, Tanzania

Many individual researchers have used line transect counts to estimate forest primate abundance. They have devoted less attention to the interpretation of line transect data obtained by several observers, as is often the case in long-term monitoring programs. We present primate relative abundance data that 5 observers collected over 6 yr (not continuous) along 4 different transects each 4 km long in the Mwanihana Forest, Udzungwa Mountains National Park, Tanzania. Total distance walked during transect repetitions is ca. 700 km. The species we saw most frequently was the endemic Udzungwa red colobus Procolobus gordonorum (mean 0.59 groups/km walked), followed by the Angolan black-and-white colobus Colobus angolensis (0.43 groups/km) and Sykes’s monkey Cercopithecus mitis (0.35 groups/km). We sighted the endemic Sanje mangabey Cercocebus galeritus sanjei and the yellow baboon Papio cynocephalus infrequently, the latter being confined to the deciduous forest parts of the transects. We analyzed sighting frequency by gross habitat type, transect, season, and observer. Interobserver differences in the relative abundance of each species were moderate and the few cases of significant variations were due to discordance of only 1 observer from the others. Estimated distances of primate group sightings differ significantly among observers, thus preventing us from deriving estimates of absolute density. Frequency distributions of distance-class intervals are not significantly different among observers, which may indicate gross interobserver consistency in the width of the area sampled. We conclude that unless consistency in data collection is checked, as we did for 2 observers who collected data simultaneously, potential interobserver differences remain an underlying source of variance in the results that cannot be separated from other sources of variance.     

Pleistocene population expansions of Antarctic seals

We sequenced a portion ( c . 475 bp) of the mitochondrial control region of three species of Antarctic phocid carnivores (Weddell seal, Leptonychotes weddellii , N  = 181; crabeater seal, Lobodon carcinophaga , N  = 143; and Ross seal, Ommatophoca rossii , N  = 41) that live seasonally or permanently in the fast ice and seasonal pack ice of the western Amundsen and Ross seas of western Antarctica. We resolved 251 haplotypes with a haplotype diversity of 0.98 to 0.99. Bayesian estimates of Θ from the program LAMARC ranged from 0.075 for Weddell seals to 0.576 for crabeater seals. We used the values of theta to estimate female effective population sizes ( N_EF ), which were 40 700 to 63 000 for Weddell seals, 44 400 to 97 800 for Ross seals, and 358 500 to 531 900 for crabeater seals. We used mismatch distributions to test for historical population size expansions. Weddell seals and crabeater seals had significant, unimodal mean pairwise difference distributions ( P  = 0.56 and 0.36, respectively), suggesting that their populations expanded suddenly around 731 000 years ago (Weddell seals) and around 1.6 million years ago (crabeater seals). Both of these expansions occurred during times of intensified glaciations and may have been fostered by expanding pack ice habitat.     

Identification of hairs found in leopard seal (<Emphasis Type="Italic">Hydrurga leptonyx</Emphasis>) scats

The leopard seal is a top-order predator in the Southern Ocean ecosystem and preys on a wide variety of vertebrate species including seals and penguins. We assessed the use of hairs found in leopard seal scats to identify the species of pinniped consumed. A reference collection of hairs was obtained from four potential leopard seal prey species including crabeater, Weddell, Ross, and Southern elephant seals. Discrimination techniques applied to terrestrial mammals did not allow for identification of the seal hairs. Instead, a 2-dimensional (2-D) and 6-dimensional (6-D) analysis technique utilising Mahalanobis distances (D ²) was used. The smallest Mahalanobis distance together with the largest value of p(F) positively identified hairs from each species. The 6-D analysis was more accurate and applied to hairs found in the leopard seal scats. The majority of prey species were identified as crabeater seals, which are a known prey item of the leopard seal.     

Histological,histochemical, and ultrastructural investigations on the gastrointestinal system of antarctic seals: Weddell seal (Leptonychotes weddellii) and crabeater seal (Lobodon carcinophagus)

The morphology of the principal sections of the gastrointestinal system of two Antarctic seals with different dietary habits, namely, the Weddell seal (Leptonychotes weddellii) and the crabeater seal (Lobodon carcinophagus), has been investigated. Histologically examined by light microscopy, the tissue layers of the gastrointestinal tract of both seals are almost identical to those observed in most other mammals and no major differences in principle organization could be found between the two seal species. The ultrastructure of the gastric and intestinal epithelial cells has been examined and is also closely comparable to that of these cells in other mammals; however, Paneth cells have not been found in our material. In general, therefore, adaptations of the gastrointestinal tract to the aquatic environment or the diet are not obvious at the morphological levels of organization studied. Histochemical differences are found between the two closely related species; mucins of the surface epithelium in the stomach of Weddell seals are highly sulfated, while those in the crabeater seal are not. Mucous neck cells in Weddell seals contain acid mucosubstances, while those of crabeater seals contain neutral ones. Goblet cells in the small and large intestine in Weddell seals contain both neutral and acid mucosubstances. Both mucin types are detected in the crabeater seal; however, the mucins of the colon in the crabeater seal are more highly sulfated than those in the Weddell seal. The ratio of globet cells to enterocytes in the large intestine of crabeater seals is higher than that in Weddell seals. © 1995 Wiley-Liss, Inc.     

Observations on food remains in faeces of elephant,leopard and crabeater seals

Summary Faecal material of leopard, crabeater and elephant seals was collected from the vicinity of Davis station, Antarctica. Very few identifiable remains were found in elephant seal droppings. Fish remains, mainly of Pleuragramma antarcticum, were found in both leopard and crabeater seal droppings. The mysid Antarctomysis maxima was also found in crabeater seal droppings and amphipods and decapod crustaceans in leopard seal droppings.     

Natural and human effects on harbor seal abundance and spatial distribution in an Alaskan glacial fjord

Tidewater glacial fjords support the largest populations of harbor seals (Phoca vitulina richardii) in Alaska and are a prime destination for tour ships. Chronic disturbance from ships, however subtle, could impact long‐term population stability. We examined variation in abundance and distribution of harbor seals on floating ice in Disenchantment Bay, Alaska, a tour ship destination for over a century with near daily visitation by ships in the spring/summer over the last decade. Counts of seals by aerial transect showed a sharp decline in May, prior to pupping and the first ships arriving; counts rebounded by the end of June remaining high until August. Seal distribution and abundance peaked in 5–7 tenths ice cover; total area of ice cover showed no effect. Despite regular flushing of seals by ships, we found no broad‐scale patterns in seal abundance and distribution that could be explained by ship presence. We cannot rule out mechanisms of long‐term disturbance, difficult to detect and that might explain notable differences with other, similar sites. Population declines at disturbed glacial sites and the still rising popularity of vessel‐based tourism indicate a need for individual‐based studies on how seals respond to the dynamics of glacial ice environments and human‐caused stresses.     

The timing of pupping by pack-ice seals in East Antarctica

Data on the timing of pupping by the three species of phocid that breed on the Antarctic pack-ice (crabeater, Ross and leopard seals) are limited. Better information would improve our understanding of these species' population and reproductive ecologies, and could facilitate planning and design of population surveys. Observations of the presence or absence of pups with adults during numerous voyages of the Australian National Antarctic Research Expeditions to East Antarctica during spring and early summer months are analysed and presented. The earliest sighting in any year of a crabeater pup accompanied by an adult was on 2 October and the latest sighting on 15 December. The ratio of crabeater pups to adults increased rapidly during the 10-day period 16–25 October, implying a pulse of births over this time. Ross seal pups with an accompanying adult were sighted between 24 October and 22 November, with a peak in the pup-adult ratio occurring in the period 6–15 November. Leopard seal pups were sighted between 8 November and 25 December, with the pup-adult ratio relatively constant during this period. The data provide circumstantial evidence that the maximum durations of lactation reported in the literature for the three species may be over-estimates. If lactation is shorter than reported, asynchrony in the timing of pupping, either among or within years, is implied.     

Dinucleotide microsatellite markers from the Antarctic seals and their use in other Pinnipeds

Twenty‐four microsatellite loci were isolated from three species of Antarctic seals (Subfamily Monachinae, Tribe Lobodontini). Eleven loci were cloned from Weddell seal, Leptonychotes weddellii, seven from leopard seal, Hydrurga leptonyx, and six from crabeater seal, Lobodon carcinophagus. Variability was assessed in Weddell seals collected in McMurdo Sound, leopard seals from Bird Island, South Georgia, and crabeater seals sampled in the eastern Ross Sea. All loci were variable in the three species used for cloning and 22 of these loci amplified variable products in the Ross seal, Ommatophoca rossii. Cross‐species amplification was largely successful, with an average of 19 loci amplifying products in other phocids.     

On the importance of estimating detection probabilities from at‐sea surveys of flying seabirds

The primary and accepted method used to estimate seabird densities at sea from ships is the strip transect method, designed to correct for the effect of random directional bird movement relative to that of the ship. However, this method relies on the critical assumption that all of the birds within the survey strip are detected. We used the distance sampling method from line‐transects to estimate detection probability of a number of species of flying seabirds, and to test whether distance from the ship and bird body size affected detectability. Detection probability decreased from 0.987 (SE=0.029) to 0.269 (SE=0.035) with increasing strip half‐width from 100 to 1400 m. Detection probability also varied between size‐groups of species with strip half‐width. For all size‐groups, this probability was close to 1 for strip half‐width of 100 m, but was 0.869 (SE=0.115), 0.725 (SE=0.096) and 0.693 (SE=0.091) for strip half‐width of 300 m, a typical strip width used in seabird surveys, for respectively large, medium and small size flying seabirds. For larger strip half‐width, detection probability was higher for large sized species, intermediate for medium sized species and lower for smaller sized species. For strip half‐width larger than 100 m we suggest that more attention should be paid to testing the assumption of perfect detectability, because abundance estimates may be underestimated when this assumption is violated. Finally, the effect of the speed of travel of flying seabird on the detection probability was estimated in a simulation study, which suggests that detection probability was underestimated with increasing flying speed.     

Serum chemistry and antibodies against pathogens in antarctic fur seals, Weddell seals, crabeater seals, and Ross seals

Information on health parameters, such as antibody prevalences and serum chemistry that can reveal exposure to pathogens, disease, and abnormal physiologic conditions, is scarce for Antarctic seal species. Serum samples from Antarctic fur seals (Arctocephalus gazella, n=88) from Bouvet?ya (2000-2001 and 2001-2002), and from Weddell seals (Leptonychotes weddellii, n=20), Ross seals (Ommatophoca rossii, n=20), and crabeater seals (Lobodon carcinophagus, n=9) from the pack-ice off Queen Maud Land, Antarctica (2001) were analyzed for enzyme activity, and concentrations of protein, metabolites, minerals, and cortisol. Adult Antarctic fur seal males had elevated levels of total protein (range 64-99 g/l) compared to adult females and pups (range 52-79 g/l). Antarctic fur seals had higher enzyme activities of creatine kinase, lactate dehydrogenase, and amylase, compared to Weddell, Ross, and crabeater seals. Antibodies against Brucella spp. were detected in Weddell seals (37%), Ross seals (5%), and crabeater seals (11%), but not in Antarctic fur seals. Antibodies against phocine herpesvirus 1 were detected in all species examined (Antarctic fur seals, 58%; Weddell seals, 100%; Ross seals, 15%; and crabeater seals, 44%). No antibodies against Trichinella spp., Toxoplasma, or phocine distemper virus (PDV) were detected (Antarctic fur seals were not tested for PDV antibodies). Antarctic seals are challenged by reduced sea ice and increasing temperatures due to climate change, and increased anthropogenic activity can introduce new pathogens to these vulnerable ecosystems and represent a threat for these animals. Our data provide a baseline for future monitoring of health parameters of these Antarctic seal species, for tracking the impact of environmental, climatic, and anthropogenic changes in Antarctica over time.     

Accommodating unmodeled heterogeneity in double-observer distance sampling surveys

Mark-recapture models applied to double-observer distance sampling data neglect the information on relative detectability of objects contained in the distribution of observed distances. A difference between the observed distribution and that predicted by the mark-recapture model is symptomatic of a failure of the assumption of zero correlation between detection probabilities implicit in the mark-recapture model. We develop a mark-recapture-based model that uses the observed distribution to relax this assumption to zero correlation at only one distance. We demonstrate its usefulness in coping with unmodeled heterogeneity using data from an aerial survey of crabeater seals in the Antarctic.     

A comparison of image and observer based aerial surveys of narwhal

From 25 to 30 August 2014 a double‐observer line‐transect survey was conducted over Melville Bay, home to one of two summering populations of narwhal (Monodon monoceros) off West Greenland. A total of 1,932 linear kilometers was surveyed along 33 transects. In addition to using observers, the aircraft was equipped with two oblique cameras to capture a comparable data set. Analysts reviewed the images for narwhal sightings, which were then matched to the observer sightings. The objectives of the study were to determine advantages and disadvantages of the detection capabilities of both methodologies, and to conduct a comparative analysis of population abundance estimates. Correcting for the truncated detection distance of the images (500 m), the image analysts recorded more sightings (62) and a lower mean group size (2.2) compared to aerial observers (36 and 3.5, respectively), resulting in comparable numbers of individuals detected by both platforms (135 vs. 126). The abundance estimate based on the image sightings was 2,536 (CV = 0.51, 95% CI: 1,003–6,406), which was not significantly different from the aerial observers estimate of 2,596 individuals (CV = 0.51; 95% CI: 961–7,008). This study supports the potential of using UAS for marine mammal abundance studies.     

An Evaluation of Survey Methods for Estimating Northern Bobwhite Abundance in Southern Texas

Abstract: Distance sampling has been identified as a reliable and well-suited method for estimating northern bobwhite (Colinus virginianus) density. However, distance sampling using walked transects requires intense sampling to obtain precise estimates, thus making the technique impractical for large acreages. Researchers have addressed this limitation by either resorting to the use of indices (e.g., morning covey-call surveys) or incorporating the use of aerial surveys with distance sampling. Both approaches remain relatively untested. Our objectives were to 1) compare density estimates among morning covey-call surveys, helicopter transects, and walked transects; 2) test a critical assumption of distance sampling pertinent to helicopter surveys (i.e., all objects on line are detected); and 3) evaluate the underlying premise of morning covey-call surveys (i.e., that the no. of calling coveys correlates with bobwhite density). Our study was conducted on 3 study sites in Brooks County, Texas, USA, during October to December, 2001 to 2005. Comparisons between walked transects and morning covey-call surveys involved the entire 5-year data set, whereas helicopter transects involved only the latter 2 years. Density estimates obtained from helicopter transects were similar to walked transect estimates for both years. We documented a detection probability on the helicopter transect line of 70 ± 10.2% (% ± SE; n = 20 coveys). Morning covey-call surveys yielded similar density estimates to walked transect estimates during only 2 of 5 years, when walked transect estimates were the least accurate and precise. We detected a positive relationship (R² = 0.51; 95% CI for slope: 29.5–53.1; n = 63 observations) between covey density and number of coveys heard calling. We conclude that helicopter transects appear to be a viable alternative to walked transects for estimating density of bobwhites. Morning covey-call surveys appear to be a poor method to estimate absolute abundance and to depict general population trajectories.     

Vagrant Antarctic pinnipeds at Gough Island

Opportunistic sightings of Antarctic fur seals Arctocephalus gazella and a leopard seal Hydrurga leptonyx at Gough Island (40°20′S, 09°54′W) in the South Atlantic Ocean represent the northernmost island records for vagrant Antarctic fur seals, and only the second for a vagrant leopard seal at Gough Island. Some ten different individual Antarctic fur seals were sighted on a single day, up to seven on a single beach. An overall total of 18 individuals were recorded over a 7-week period in October/November 2005, before the onset of the breeding (pupping) season of the resident population of Subantarctic fur seals Arctocephalus tropicalis. Most were immature, male and mostly in good condition (n = 11, 61%); one mature male and six putative females were also present. All had departed after 23 November, although only a fraction of the available beaches was searched.     

Reaction of Harbor Seals to Cruise Ships

Abstract: The largest aggregations of harbor seals (Phoca vitulina) in Alaska, USA, haul out on floating ice in tidewater glacial fjords. Seals use these fjords in peak numbers during the critical periods of pupping, breeding, and molting when visits by tour ships also peak. Documented and suspected declines of harbor seals in fjords with rising vessel traffic underscore the need to better understand possible impacts, particularly in areas where ship visits have risen substantially in the past 2 decades. We examined the interruption of haul-out bouts of harbor seals due to approaching cruise ships in Disenchantment Bay, Alaska. We conducted observations from cruise ships and focused on disturbance of seals as evidenced by seals flushing into the water from the floating ice on which they rested. We investigated rate of flushing in relation to vessel distance, approach angle, group size, and seal type (mother, pup, or other). Using a survival-regression analysis, we found that the risk of disturbing harbor seals increased when ships approached within 500 m; seals approached as close as 100 m were 25 times more likely to enter the water than seals 500 m from a ship. Seals were 4 times more prone to enter the water when ships were approaching directly rather than passing abeam. Seals responded similarly regardless of group size or seal type. Energetic models indicated a potential to disrupt energy balance and cause thermal stress in disturbed pups if they spent >50% of their time in ice-chilled water. Studies at non-glacial sites suggest that pups spend 40–70% of their time in the water. Voluntary guidelines for approaching seals in Alaska recommend that cruise ships approach ≥91 m (100 yards), a distance at which we show 90% of seals would flush into the water. Our findings indicate a need to develop regulations to maintain a 500-m separation between cruise ships and seals in all Alaskan glacial fjords.     

Genetically effective population sizes of Antarctic seals estimated from nuclear genes

We analyzed eight nuclear microsatellite loci in three species of Antarctic seals; Weddell seal (Leptonychotes weddellii; mean N = 163), crabeater seal (Lobodon carcinophaga; 138) and Ross seal (Ommatophoca rossii; 35). We estimated genetic diversity (Θ) and effective population size (N _E) for each species. Autosomal microsatellite based N _E estimates were 151,200 for Weddell seals, 880,200 for crabeater seals, and 254,500 for Ross seals. We screened one X-linked microsatellite (Lw18), which yielded similar N _E estimates to the autosomal loci for all species except the Ross seals, where it was considerably larger (~103 times). Microsatellite N _E estimates were comparable with previously published N _E estimates from mitochondrial DNA, but both are substantially lower than direct estimates of population size in all species except the Ross seals. The ratio of maternally versus biparentally derived estimates of N _E for Ross seals was not consistent with the hypothesis that they are a polygynous species. We found no sign of a recent, sustained genetic bottleneck in any of the species.     

DISTRIBUTION AND ABUNDANCE OF THE AMAZON RIVER DOLPHIN (INIA GEOFFRENSIS) AND THE TUCUXI (SOTALIA FLUVIATILIS) IN THE UPPER AMAZON RIVER

A boat survey was conducted from 5 to 26 June 1993 to estimate the abundance of the Amazon river dolphin ( Inia geoffrensis ) and the tucuxi ( Sotalia fluviatilis ) along ca . 120 km of the Amazon River bordering Colombia, Peru, and Brazil. Two survey methods were used: line transects during 5 d and strip transects during 15 d. The line transects were used to estimate the abundance of both species in the main channels of the Amazon at distances greater than 200 m from river banks and islands, and strip transects were used to estimate abundance in the remainder of the habitat. A total of 29 sightings was obtained using line transects, including 8 of Inia , 15 of Sotalia , and 6 with both species present. The total number of sightings made while using strip transects was 143, including 78 of Inia , 51 of Sotalia , and 14 with both species present. The distributions of sightings with respect to distance from the nearest bank were not significantly different between the two species. Based on the results from the two methods, we estimate that there are 346 (CV = 0.12) Inia and 409 (CV = 0.13) Sotalia in the study area. Overall, the mean group size for Inia was 2.9 individuals and for Sotalia was 3.9 individuals. Inia density (dolphin/km²) was highest in tributaries (4.8), followed by areas around islands (2.7) and along main banks (2.0); while Sotalia density was highest in lakes (8.6), followed by areas along main banks (2.8) and around islands (2.0). These are among the highest densities measured to date for any cetacean.     

Population structure of ice-breeding seals

The development of population genetic structure in ice-breeding seal species is likely to be shaped by a combination of breeding habitat and life-history characteristics. Species that return to breed on predictable fast-ice locations are more likely to exhibit natal fidelity than pack-ice-breeding species, which in turn facilitates the development of genetic differentiation between subpopulations. Other aspects of life history such as geographically distinct vocalizations, female gregariousness, and the potential for polygynous breeding may also facilitate population structure. Based on these factors, we predicted that fast-ice-breeding seal species (the Weddell and ringed seal) would show elevated genetic differentiation compared to pack-ice-breeding species (the leopard, Ross, crabeater and bearded seals). We tested this prediction using microsatellite analysis to examine population structure of these six ice-breeding species. Our results did not support this prediction. While none of the Antarctic pack-ice species showed statistically significant population structure, the bearded seal of the Arctic pack ice showed strong differentiation between subpopulations. Again in contrast, the fast-ice-breeding Weddell seal of the Antarctic showed clear evidence for genetic differentiation while the ringed seal, breeding in similar habitat in the Arctic, did not. These results suggest that the development of population structure in ice-breeding phocid seals is a more complex outcome of the interplay of phylogenetic and ecological factors than can be predicted on the basis of breeding substrate and life-history characteristics.     

Abundance estimation of long-diving animals using line transect methods

Line transect sampling is one of the most widely used methods for estimating the size of wild animal populations. An assumption in standard line transect sampling is that all the animals on the trackline are detected without fail. This assumption tends to be violated for marine mammals with surfacing/diving behaviors. The detection probability on the trackline is estimated using duplicate sightings from double-platform line transect methods. The double-platform methods, however, are insufficient to estimate the abundance of long-diving animals because these animals can be completely missed while the observers pass. We developed a more flexible hazard probability model that incorporates information on surfacing/diving patterns obtained from telemetry data. The model is based on a stochastic point process and is statistically tractable. A simulation study showed that the new model provides near-unbiased abundance estimates, whereas the traditional hazard rate and hazard probability models produce considerably biased estimates. As an illustration, we applied the model to data on the Baird's beaked whale (Berardius bairdii) in the western North Pacific.     

加州Santa Monica海湾鳍足类的生态学

研究了加州Santa Monica海湾鳍足类的生态学.从1997-2007年乘船调查了277次,发现海狮(Zalophus californianus)是最常见的动物(89%,见到的次数为1393次),其次是港海豹(Phoca vitulina richardsi,8%,n=131)和北象海豹(Mirounga angustirostris,1%,n=15).在29%的遇见次数(观察到瓶海豚205次)中,发现海狮(偶尔也发现港海豹)与瓶鼻海豚集群(Tursiops truncatus);短喙真海豚(Delphinus delphis)与长喙真海豚(D.capensis)在53% 的遇见次数(遇见真海豚次数n=155)中,发现短喙真海豚(Delphinus delphis)与长喙真海豚(D.capensis)集群;一般在沿岸水域(离岸边距离<500 m)见到海狮和港海豹,但在整个海湾也能见到,表现出这两个物种对海底峡谷的偏爱.北象海豹仅见于近海,主要在海底峡谷附近. 经常看到海狮、港海豹和北象海豹游动(50%,n=728)、进行热调节(14%,n=205)、以及取食(3.2%,n=47),但几乎见不到有社会性活动(0.21%,n=3).