A genetic approach to the species problem in wild potato

Wild potatoes are native to the Americas, where they present very wide geographical and ecological distribution. Most are diploid, obligate out-crossers due to a multiallelic gametophytic self-incompatibility (S) locus that prevents self-fertilisation and crossing between individuals carrying identical S-alleles. They have two alternative modes of reproduction: sexual (by seeds) and asexual (by stolons and tubers), which provide, respectively, for genetic flexibility in changing environments and high fitness of adapted genotypes under stable conditions. Since the early twentieth century, their taxonomic classification has been mostly based on morphological phenotypes (Taxonomic Species Concept). More recently, attempts have been made to establish phylogenetic relationships, applying molecular tools in samples of populations (accessions) with a previously assigned specific category. However, neither the reproductive biology and breeding relations among spontaneous populations nor the morphological and genetic variability expected in obligate allogamous populations are considered when the taxonomic species concept is applied. In nature, wild potato populations are isolated through external and internal hybridisation barriers; the latter, which are genetically determined, can be either pre-zygotic (pollen-pistil incompatibility) or post-zygotic (abortion of embryo, endosperm or both tissues, sterility, and hybrid weakness and breakdown in segregating generations). The internal barriers, however, can be incomplete, providing opportunities for hybridisation and introgression within and between populations and ploidy levels in areas of overlap. The widespread occurrence of spontaneous hybrids in nature was recognised in the mid-twentieth century. Using genetic approaches, results have been obtained that provide strong support to the assertion that populations are at different stages of genetic divergence and are not at the end of the evolutionary process, as presupposed by the Taxonomic Species Concept. Furthermore, since wild potatoes have uniparental and biparental overlapping generations, the Biological Species Concept - developed for sexually reproducing biparental organisms - cannot be applied to them. In this paper, morphological, genetic, molecular and taxonomic studies in wild potato are reviewed, considering the genetic consequences of their reproductive biology, in an attempt to shed light on the species problem, because of its relevance in germplasm conservation and breeding.     

A pragmatic approach to the species problem from a paleontological perspective

The ideal scenario for paleontologists would be for the species they designate to be equivalent to the species recognized for modern animals, in the sense that they were formed as a result of the same evolutionary processes. This would mean, for example, that we could be confident that in combining extant and extinct taxa in phylogenetic analyses we would be dealing with equivalent operational taxonomic units. Notwithstanding the many thousands of pages that have been spent arguing over species concepts, the only concept that has won widespread acceptance for the designation of modern species is Mayr's Biological Species Concept (BSC).¹ In fact, whenever we complete a cladistic analysis, we assume reproductive isolation of our terminal taxa because otherwise their similarities could be the product of interbreeding rather than common ancestry. Fundamentally, we all behave as though the BSC is true.     

A new approach to the job scheduling problem in computational grids

Job scheduling is one of the most challenging issues in Grid resource management that strongly affects the performance of the whole Grid environment. The major drawback of the existing Grid scheduling algorithms is that they are unable to adapt with the dynamicity of the resources and the network conditions. Furthermore, the network model that is used for resource information aggregation in most scheduling methods is centralized or semi-centralized. Therefore, these methods do not scale well as Grid size grows and do not perform well as the environmental conditions change with time. This paper proposes a learning automata-based job scheduling algorithm for Grids. In this method, the workload that is placed on each Grid node is proportional to its computational capacity and varies with time according to the Grid constraints. The performance of the proposed algorithm is evaluated through conducting several simulation experiments under different Grid scenarios. The obtained results are compared with those of several existing methods. Numerical results confirm the superiority of the proposed algorithm over the others in terms of makespan, flowtime, and load balancing.     

A new approach to the problem of oxygen formation in photosynthesis

A detailed quantum-mechanical analysis of the model of water oxidizing complex, based on recent X-ray data on the structure of PSII, was made. A mechanism of water oxidation was suggested and explained for the first time. The role of three manganese atoms that are not involved directly in water oxidation, the role of the cubic structure of the complex, and the necessity of the presence of calcium and chlorine atoms during water oxidation are discussed. Theoretical computations of the energies of the complex in each S-state were made.     

Rare plant species: floristic, phytocoenotic and population approach

The system of concepts used when estimating the rarity of plants is analyzed and the basic categories of rarity are defined, namely: true, diffuse, peripheral and temporal. The insufficiency of scientific information on ecological and coenotic relationships of rare plants is demonstrated and the necessity of a complex assessment of population system of a rare plant species is substantiated. The importance and limitations of the information on rare plants contained in the Red Books and the Red Lists for phytosozological practice is discussed.     

A new approach to identify species in Xiphinema americanum sensu lato

Four putative species belonging to the X. americanum group are known to transmit American nepoviruses and these nematodes and viruses are listed in European quarantine legislation. Identification of species in this group is therefore of particular importance for phytosanitary purposes, but is problematic because of the similar morphology of the putative species. As part of the Synthesys project BE-TAF 1769, eight collaborative institutions contributed material to Fera for study. Video technology allowed the best records of type material and in conjunction with photographic images created a 'virtual' collection of images that relies less on the deteriorating quality of museum specimens. Revised definitions of lip region and tail shape are considered to be the most stable characters for differentiation. Position of the amphidial aperture, development of the odontostyle collar and some established morphometric characters are considered of limited use although they retain value for latter stages of identification.     

A new approach to the detection and statistical classification of Ca2+ sparks

The availability of high-speed, two-dimensional (2-D) confocal microscopes and the expanding armamentarium of fluorescent probes presents unprecedented opportunities and new challenges for studying the spatial and temporal dynamics of cellular processes. The need to remove subjectivity from the detection process, the difficulty of the human eye to detect subtle changes in fluorescence in these 2-D images, and the large volume of data produced by these confocal microscopes call for the need to develop algorithms to automatically mark the changes in fluorescence. These fluorescence signal changes are often subtle, so the statistical estimate of the likelihood that the detected signal is not noise is an integral part of the detection algorithm. This statistical estimation is fundamental to our new approach to detection; in earlier Ca(2+) spark detectors, this statistical assessment was incidental to detection. Importantly, the use of the statistical properties of the signal local to the spark, instead of over the whole image, reduces the false positive and false negative rates. We developed an automatic spark detection algorithm based on these principles and used it to detect sparks on an inhomogeneous background of transverse tubule-labeled rat ventricular cells. Because of the large region of the cell surveyed by the confocal microscope, we can detect a large enough number of sparks to measure the dynamic changes in spark frequency in individual cells. We also found, in contrast to earlier results, that cardiac sparks are spatially symmetric. This new approach puts the detection of fluorescent signals on a firm statistical foundation.     

Critical temperatures in lactating dairy cattle: A new approach to an old problem

Thermoregulatory reactions of lactating cows (33 Kg milk/day) have been measured in summer (T_g 25° – 39°C) and in winter (T_g 9, 5° – 24°C) at 3-hr intervals, during four 24-hr cycles. The animals maintained an almost continuous peripheral vasodilation throughout the experimental period. The upper ambient temperatures at which a dairy cow maintains homoeothermy were calculated for different metabolic rates. At the maintenance level a dry cow may maintain homoeothermy at up to 24°C without sweating and up to 40°C if sweating at 50% of the maximal sweating capacity. For a cow producing 30 kg milk/day, the respective figures were 12°C and 24°C respectively. These data indicate that the thermoregulatory capacity of the animals in the natural climate considerably expands the thermal comfort temperature range.

---

Zusammenfassung Die wärmeregulatorischen Reaktionen milchgebender Kühe (33 kg Milch/Tag) wurden im Sommer (T_g 25° – 39°C) und im Winter (T_g 9, 5° – 24°C) in 3-Stunden Intervallen während 4 mal 24 Stunden periodisch gemessen. Die Tiere hatten eine beinahe kontinuierliche periphere Gefässerweiterung während der Versuchsperioden. Die obere Umgebungstemperatur, bei der Milchkühe homoiothermisch bleiben, wurde aus verschiedenen Stoffwechselraten berechnet. Auf dem Erhaltungsniveau kann eine trocken stehende Kuh die Homoiothermie bis 24°C ohne Schwitzen halten und bis auf 40°C bei Schwitzen bis 50% des maximalen Schwitzvermögens. Für eine Kuh, die 30 kg Milch/Tag leistet sind die entsprechenden Werte 12°C beziehungsweise 24°C. Diese Werte zeigen, dass das Wärmeregulationsvermögen der Tiere im natürlichen Klima den Wärmekomfort-Temperaturbereich erheblich ausdehnt.

---

Resume On a mesuré l'aptitude de thermorégulation de vaches en lactation (33 kg de lait par jour) toutes les 3 heures durant 4 cycles de 24 heures et cela aussi bien en été (T_g 25° à 39°C) qu'en hiver (T_g 9, 5° à 24°C). Les animaux ont présenté une vasodilatation périphérique assez constante durant toute la période des essais. On a en outre calculé, en partant de différents taux de métabolisme, la température ambiante maximum pour laquelle une vache laitière peut maintenir son homéothermie. Pour une vache sèche, ce maximum est de 24°C sans transpirer et de 40°C si elle transpire le 50% de sa capacité maximum. Pour une vache donnant 30 kg de lait par jour, ces chiffres s'abaissent à 12°C dans le premier cas, à 24°C dans le second. Ces chiffres montrent que la capacité de thermorégulation du bétail bovin augmente considérablement l'amplitude de la zone de confort thermique en climat naturel.

     

A new approach to the problem of multiple comparisons in the genetic dissection of complex traits.

Saturated genetic marker maps are being used to map individual genes affecting quantitative traits. Controlling the "experimentwise" type-I error severely lowers power to detect segregating loci. For preliminary genome scans, we propose controlling the "false discovery rate," that is, the expected proportion of true null hypotheses within the class of rejected null hypotheses. Examples are given based on a granddaughter design analysis of dairy cattle and simulated backcross populations. By controlling the false discovery rate, power to detect true effects is not dependent on the number of tests performed. If no detectable genes are segregating, controlling the false discovery rate is equivalent to controlling the experimentwise error rate. If quantitative loci are segregating in the population, statistical power is increased as compared to control of the experimentwise type-I error. The difference between the two criteria increases with the increase in the number of false null hypotheses. The false discovery rate can be controlled at the same level whether the complete genome or only part of it has been analyzed. Additional levels of contrasts, such as multiple traits or pedigrees, can be handled without the necessity of a proportional decrease in the critical test probability.     

Primate foot evolution: a new approach to the old problem

Functional reasons for specific changes in mammal foot skeleton occurring in course of formation and progressive evolution of locomotion on the parasagittal extremities are formulated for the first time. The paper establishes the base of the study of highly parasagittal forms (terrestrial catarhine monkeys, man and his ancestors), that evolved in primate history much later then their counterparts in other orders. The foot of primitive primate (Lemur catta) is scrutinized as a model of a primitive foot structure, that determined the peculiarities of foot evolution in higher forms. Primate foot traits as elements of general mammal foot evolution are described. Some specializations of the primate foot to the arboreal habitats are concluded to preclude the primate foot from progressing to the state inherent in highly advanced parasagittal members of other mammalian orders.