Transmission patterns of eukaryotic transposable elements: arguments for and against horizontal transfer

Recent studies have demonstrated that several classes of transposable elements are widely distributed within eukaryotes. Horizontal transmission of these transposable elements has often been invoked In order to explain the observed variation and relationships within and between species. These same patterns of variation and relationships, however, may originate from processes that do not involve the lateral transfer of genetic material across species.     

Why does the unimodal species richness–productivity relationship not apply to woody species: a lack of clonality or a legacy of tropical evolutionary history?

Aim  To study how differences in species richness patterns of woody and herbaceous plants may be influenced by ecological and evolutionary factors. Unimodal species richness–productivity relationships (SRPRs) have been of interest to ecologists since they were first described three decades ago for British herbaceous vegetation by J. P. Grime. The decrease in richness at high productivity may be due to competitive exclusion of subordinate species, or diverse factors related to evolution and dispersal. Unimodal SRPRs are most often reported for plants, but there are exceptions. For example, unimodal SRPRs are common in the temperate zone but not in the tropics. Similarly, woody species and forest communities in the Northern Hemisphere do not tend to show unimodal SRPRs.
Location  Global.
Methods  We used data from the literature to test whether a unimodal SRPR applies to woody species and forest communities on a global scale. We explored whether the shape of SRPRs may be related to the lack of clonality in woody species (which may prevent their being competitively superior), or the legacy of evolutionary history (most temperate woody species originate from tropical lineages, and due to niche conservatism they may still demonstrate 'tropical patterns'). We used case studies that reported the names of the dominant or most abundant species for productive sites.
Results  Woody species were indeed less clonal than herbaceous species. Both clonality and the temperate evolutionary background of dominating species were associated with unimodality in SRPRs, with woodiness modifying the clonality effect.
Main conclusions  The unimodal SRPR has been common in the ecological literature because most such studies originate from temperate herbaceous communities with many clonal species. Consequently, both evolutionary and ecological factors may influence species richness patterns.     

Arsenic biomethylation by photosynthetic organisms

Arsenic (As) is a ubiquitous element that is widespread in the environment and causes numerous health problems. Biomethylation of As has implications for its mobility and toxicity. Photosynthetic organisms may play a significant role in As geochemical cycling by methylating it to different As species, but little is known about the mechanisms of methylation. Methylated As species have been found in many photosynthetic organisms, and several arsenite S-adenosylmethionine (SAM) methyltransferases have been characterized in cyanobacteria and algae. However, higher plants may not have the ability to methylate As. Instead, methylated arsenicals in plants probably originate from microorganisms in soils and the rhizosphere. Here, we propose possible approaches for developing 'smart' photosynthetic organisms with an enhanced and sensitive biomethylation capacity for bioremediation and safer food.     

木兰科植物及其珍稀濒危种类的迁地保护

应用迁地保护的原理和方法,在华南植物园引种保存木兰植物１１属１２５种,其中中国１１３种,国外１２种,属哗啦诉珍稀濒危植物有２９种,从而建立了具有相当规模的木兰物种质基因库。     

The frog filter: amphibian introduction bias driven by taxonomy,body size and biogeography

Aim Invasive species often exhibit a highly non‐random suite of traits relative to non‐invasive taxa, and these biases reflect strong selection at a series of steps along the invasion pathway. Here we investigate traits that are favoured in the first of these steps: the introduction of species outside their native geographic range. We use the global introduction of amphibians as our case study. Location Global. Methods We examined whether taxonomy, body size and attributes of the native geographic range predict the likelihood of an introduction event in amphibians. We then determined whether these characteristics differed between amphibian species that have been introduced intentionally and those that have been introduced unintentionally (i.e. stowaways). Results Comparisons of introduced and non‐introduced amphibians reveal significant biases with respect to taxonomic position (c. 50% of all introduced species originate from only 5% of all families), and characteristics of the native geographic range (most introduced species originate from the Northern Hemisphere, occupy a wide geographic range and are sympatric with high densities of humans). Many of these biases presumably reflect the ease and likelihood of capturing and transporting such animals. Additionally, intentionally introduced species are of larger than average body size, occupy higher elevations in their native ranges, and are more likely to originate from the Northern Hemisphere than unintentionally introduced species. Main conclusions Introduced amphibian species are not a random subset of the global amphibian fauna with respect to taxonomic affiliation and biogeography, and this restricts our ability to make robust generalizations regarding the ecological determinants of introduction success. Nevertheless, many of our findings are similar to those revealed by previous analyses of vertebrate and invertebrate introductions. Thus, our study suggests that biases in the anthropogenic mechanisms involved in transporting species around the globe are surprisingly consistent across broadly divergent taxa.     

Observations on Furcellaria fastigiata (L.) Lam. forma aegagropila Reinke in Danish waters together with a note on other unattached algal forms

The unattached populations of Furcellaria fastigiata forma aegagropila in Danish waters exhibit characteristics which are paralleled to a remarkable degree by those possessed by communities of unattached algae in other parts of the world. These characteristics include sterility, multiplication by vegetative means, and the adoption of a form, devoid of holdfast organs, which commonly has a globular or subglobular habit suited to rolling about on the sea bottom. Branching is often profuse and patent and may be accompanied by a thallus diameter far smaller than that of the attached form. Vegetative multiplication may be effected by fragmentation, and, as in F. fastigiata forma aegagropila, by a small accessory lateral branches which function as ‘propagulae.’ The latter originate in a manner somewhat different from that of the axial regenerated branches produced on decapitated thalli and on thalli which have been more than superficially wounded. Evidence suggests that much of the unattached population of this latter species in the central Kattegat is made up of diploid thalli. All loose lying forms ultimately originate from attached species, which possess or can adopt certain characteristics which enable them to survive in the unattached state.     

Theoretical basis for predicting climate-induced abrupt shifts in the oceans

Among the responses of marine species and their ecosystems to climate change, abrupt community shifts (ACSs), also called regime shifts, have often been observed. However, despite their effects for ecosystem functioning and both provisioning and regulating services, our understanding of the underlying mechanisms involved remains elusive. This paper proposes a theory showing that some ACSs originate from the interaction between climate-induced environmental changes and the species ecological niche. The theory predicts that a substantial stepwise shift in the thermal regime of a marine ecosystem leads indubitably to an ACS and explains why some species do not change during the phenomenon. It also explicates why the timing of ACSs may differ or why some studies may detect or not detect a shift in the same ecosystem, independently of the statistical method of detection and simply because they focus on different species or taxonomic groups. The present theory offers a way to predict future climate-induced community shifts and their potential associated trophic cascades and amplifications.     

Morphology and motility of spermatozoa from different regions of the epididymal duct in the domestic cat

Spermatozoa undergo important maturational changes as they pass through the epididymal duct. Some domestic cats and many species of wild felids have high proportions of abnormal spermatozoa in their ejaculates. The epididymis has been shown to be able to remove certain abnormal sperm forms in some species while other sperm abnormalities originate in the epididymis. So far, it has not been shown how the epididymis affects sperm morphology in the domestic cat. Therefore, motility and sperm morphology were studied in spermatozoa from the efferent ducts and from the 6 regions of the epididymal duct. There were significant decreases in the proportions of spermatozoa with abnormalities of the sperm head, acrosomal defects, acrosomal abnormalities and in the proportion of midpiece abnormalities. In contrast, there was a small but significant increase in the proportion of spermatozoa with abnormalities of the tail. Spermatozoa acquired the capacity for motility in Region 4, where the cytoplasmic droplet also moved from a proximal to a distal position, indicating that important maturational changes take place in this region. The results of this study demonstrate that the proportions of sperm abnormalities originating in the testes decrease during epididymal transport, while some sperm tail abnormalities may actually originate in the epididymis.     

DING proteins; novel members of a prokaryotic phosphate-binding protein superfamily which extends into the eukaryotic kingdom

PstS proteins are the cell-bound phosphate-binding elements of the ubiquitous bacterial ABC phosphate uptake mechanisms. Primary and tertiary structures, characteristic of pstS proteins, are conserved in proteins, which are expressed in secretory operons and induced by phosphate deprivation, in Pseudomonas species. There are two subsets of these proteins; AP proteins, which are alkaline phosphatases, and DING proteins, named for their N-terminal sequence, which are phosphate-binding proteins. Both form elements of a proposed phosphate-scavenging system in pseudomonads. DING proteins have also been isolated from many eukaryotic sources, and are associated with both normal and pathological functions in mammals. Their phosphate-binding function suggests a role in biomineralization, but the ability to bind other ligands may be related to signal transduction in eukaryotes. Though it has been claimed that all such proteins may originate from pseudomonads, many eukaryotic DING proteins have unique features which are incompatible with a bacterial origin.     

Plant introductions,hybridization and gene flow

Many regional floras contain a high proportion of recently introduced plant species. Occasionally, hybridization between an introduced species and another species (introduced or native) can result in interspecific gene flow. This may occur even in instances where the F(1) hybrid shows very high sterility, but occasionally produces a few viable gametes. We provide examples of gene flow occurring between some rhododendrons recently introduced to the British flora, and between an introduced and native Senecio species. Neutral molecular markers have normally been employed to obtain evidence of interspecific gene flow, but the challenge now is to isolate and characterize functional introgressed genes and to determine how they affect the fitness of introgressants and whether they improve adaptation to novel habitats allowing introgressants to expand the range of a species. We outline a candidate gene approach for isolating and characterizing an allele of the RAY gene in Senecio vulgaris, which is believed to have introgressed from S. squalidus, and which causes the production of ray florets in flower heads. We discuss the effects of this introgressed allele on individual fitness, including those that originate directly from the production of ray florets plus those that may arise from pleiotropy and/or linkage.     

Alien plant species favoured over congeneric natives under experimental climate warming in temperate Belgian climate

Climate warming and biological invasions by alien species are two key factors threatening the world’s biodiversity. To date, their impact has largely been studied independently, and knowledge on whether climate warming will promote invasions relies strongly on bioclimatic models. We therefore set up a study to experimentally compare responses to warming in native and alien plant species. Ten congeneric species pairs were exposed to ambient and elevated temperature (+3°C) in sunlit, climate-controlled chambers, under optimal water and nutrient supply to avoid interaction with other factors. All species pairs combined, total plant biomass reacted differently to warming in alien versus native species, which could be traced to significantly different root responses. On average, native species became less productive in the warmer climate, whereas their alien counterparts showed no response. The three alien species with the strongest warming response (Lathyrus latifolius, Cerastium tomentosum and Artemisia verlotiorum) are currently non-invasive but all originate from regions with a warmer climate. Still, other alien species that also originate from warmer regions became less or remained equally productive. Structural or ecophysiological acclimation to warming was largely absent, both in native and alien species, apart from light-saturated photosynthetic rate, where warming tended to restrain the native but not the alien species. A difference in the capacity to acclimate photosynthetic rates to the new climate may therefore have caused the contrasting biomass response. Future experiments are needed to ascertain whether climate warming can effectively tip the balance between native and alien competitors.     

A field study of larval development in a dragonfly assemblage in African desert ponds (Odonata)

Aquatic animals distributed along a 'habitat-permanence' gradient (HPG), differ in life history (Wellborn et al., 1996. Annual Revue of Ecology and Systematics 27: 337--363). Dragonflies that occur in hot arid regions often occur in temporary waters and consequently perform direct and rapid development. Dragonfly species of the Namibian desert do differ in their selection of habitats along the HPG and therefore may also differ in life cycle. Here, we attempt to monitor colonisation, larval growth and emergence in a temporary pond of known history. We studied the development of dragonfly species that laid eggs in artificial ponds constructed by us in March 2001. The assemblage consisted of species that originate from different habitats along the HPG. To obtain data on larval development we took samples from the ponds at 10-day intervals. Most species showed rapid development. By regressing the maximum sizes attained by larvae on each sampling date against time we estimated growth rates for five species and were thereby able to estimate that total duration of development from oviposition to emergence ranged between 38 and 70 days. Observation of first oviposition and first emergence for three of these species corroborated our estimates based on growth rate. Of few species, which laid eggs in the ponds no larvae or adults were found. For some this may have been the result of predation whereas others may not have grown fast enough to emerge before the ponds dried up. Our results indicate that dragonflies cannot recognise whether a pond will retain water long enough for full larval development and oviposit in waters that will not allow larval development.     

Meiotic studies of a 38,XY/39,XXY mosaic boar

Klinefelter's syndrome (KS) is the most common sex chromosome abnormality identified in human males. This syndrome is generally associated with infertility. Men with KS may have a 47,XXY or a 46,XY/47,XXY karyotype. Studies carried out in humans and mice suggest that only XY cells are able to enter and complete meiosis. These cells could originate from the XY cells present in mosaic patients or from XXY cells that have lost one X chromosome. In pig, only 3 cases of pure 39,XXY have been reported until now, and no meiotic analysis was carried out. For the first time in pig species we report the analysis of a 38,XY/39,XXY boar and describe the origin of the supplementary X chromosome and the chromosomal constitutions of the germ and Sertoli cells.     

Discovering the hidden secondary metabolome of Myxococcus xanthus: a study of intraspecific diversity

As a monophyletic group, the myxobacteria are known to produce a broad spectrum of secondary metabolites. However, the degree of metabolic diversity that can be found within a single species remains unexplored. The model species Myxococcus xanthus produces several metabolites also present in other myxobacterial species, but only one compound unique to M. xanthus has been found to date. Here, we compare the metabolite profiles of 98 M. xanthus strains that originate from 78 locations worldwide and include 20 centimeter-scale isolates from one location. This screen reveals a strikingly high level of intraspecific diversity in the M. xanthus secondary metabolome. The identification of 37 nonubiquitous candidate compounds greatly exceeds the small number of secondary metabolites previously known to derive from this species. These results suggest that M. xanthus may be a promising source of future natural products and that thorough intraspecific screens of other species could reveal many new compounds of interest.     

Increased floral divergence in sympatric monkeyflowers

Sympatric sister species are predicted to have greater divergence in reproductive traits than allopatric sister species, especially if mating system shifts, such as the evolution of self-fertilization, are more likely to originate within the geographic range of the outcrossing ancestor. We present evidence that supports this expectation-sympatric sister species in the monkeyflower genus, Mimulus, exhibit greater divergence in flower size than allopatric sister species. Additionally, we find that sympatric sister species are more likely to have one species with anthers that overtop their stigmas than allopatric sister species, suggesting that the evolution of automatic self-pollination may contribute to this pattern. Potential mechanisms underlying this pattern include reinforcement and a stepping stone model of parapatric speciation.     

The worldwide transfer of ants: geographical distribution and ecological invasions

Aim This is the first comprehensive account of the biogeography of ants transferred and at least temporarily established outside their native habitat. Location Using museum and literature records, I established the distributions of transferred ant species. Methods I used taxonomic and functional groups to assess how geographical spread as a transferred species is affected by taxonomy and life history. Results 147 ant species in forty-nine genera have been recorded outside of their native habitat. The proportion of transferred ants is similar to the number of genera and species in each subfamily. The species-rich subfamily Myrmicinae contains nearly 50% of all transferred species, while many of the species-poor subfamilies have absolutely no transferred species. A disproportionate high number of transferred ants originate from the Neotropical and Oriental biogeographic regions. The Pacific Islands are the recipients of the most transferred ant species. Most transferred ants belong to the CRYPTIC, OPPORTUNIST, and GENERALIZED MYRMICINE functional groups, while there are no recorded transfers of army ants or leaf-cutting ants. Both invasive and human commensal ‘tramp’ ant species are nonrandom subsets of transferred ants. Main conclusions ‘Tramp’ species and invasive species tend to have widespread geographical distributions, and share life history characteristics including queen number, nest structure, and foraging behaviour. Combining observations of functional groups and biogeography may lead to a better understanding of the factors contributing to the spread of transferred species.     

The presence of multiple phenoloxidases in Caribbean reef-building corals

The melanin-synthesis pathways, phenoloxidase (PO) and laccases, are staple components of invertebrate immunity and have been shown to be vital in disease resistance. The importance of this pathway in immunity is a consequence of the release of oxygen radicals with cytotoxic effects and the production of insoluble melanin, which aids in the encapsulation of pathogens and parasites. Recently, melanization has been demonstrated as a critical immune response in several coral systems, although the biochemical components have not been thoroughly investigated. Coral diseases are posing a serious threat to coral reef survival, necessitating a full understanding of resistance mechanisms. In this study, we take a comparative approach to probe potential pathway components of melanin-synthesis in seven species from four different families of healthy Caribbean reef-building corals. Using different quinone substrates, we tested for the activity of the POs catecholase and cresolase, as well as laccase activity in each coral species. Since many invertebrate POs demonstrate some dependence on cations such as copper, calcium and magnesium, we treated the coral extracts with the chelators EDTA and EGTA to test the reliance of coral catecholase on these cations. The activity of the antioxidants peroxidase, superoxide dismutase and catalase was also tested in each coral and correlated to PO activity. All corals had demonstrable catecholase, cresolase and laccase activities, but only catecholase and cresolase activities varied significantly among species. Catecholase activity in each coral species was reduced by treatment with EDTA and EGTA, although some coral species were less affected than the others. Overall, these data show remarkable heterogeneity among the seven coral species of boulder-like reef building Caribbean coral. These differences may originate from the level of investment of each coral species into immunity and may explain disease ecology on the reef.     

Linear Motif-Mediated Interactions Have Contributed to the Evolution of Modularity in Complex Protein Interaction Networks

The modular architecture of protein-protein interaction (PPI) networks is evident in diverse species with a wide range of complexity. However, the molecular components that lead to the evolution of modularity in PPI networks have not been clearly identified. Here, we show that weak domain-linear motif interactions (DLIs) are more likely to connect different biological modules than strong domain-domain interactions (DDIs). This molecular division of labor is essential for the evolution of modularity in the complex PPI networks of diverse eukaryotic species. In particular, DLIs may compensate for the reduction in module boundaries that originate from increased connections between different modules in complex PPI networks. In addition, we show that the identification of biological modules can be greatly improved by including molecular characteristics of protein interactions. Our findings suggest that transient interactions have played a unique role in shaping the architecture and modularity of biological networks over the course of evolution.     

Continuing the debate on the role of Quaternary environmental change for macroevolution

The Quaternary has been a period of dramatic environmental change for the past 1.8 Myr, with major shifts in distributions and abundances of terrestrial and marine organisms. The evolutionary consequences of this have been debated since the nineteenth century. However, the lack of accurate relative and absolute time-scales for evolutions and environmental change inhibited progress. We do now have an understanding of time-scales. Palaeoecology has demonstrated the individualistic nature of species' response to environmental change, but lacks a means of determining ancestry. DNA characterization of modern populations in relation to their distributions nicely complements palaeoecological results by contributing ancestry. The chance to understand how species originate and the causal factors of speciation (environmental change or otherwise) may be within reach.