Estimating ancestral ranges: testing methods with a clade of neotropical lizards (iguania: liolaemidae)

Establishing the ancestral ranges of distribution of a monophyletic clade, called the ancestral area, is one of the central objectives of historical biogeography. In this study, I used three common methodologies to establish the ancestral area of an important clade of Neotropical lizards, the family Liolaemidae. The methods used were: Fitch optimization, Weighted Ancestral Area Analysis and Dispersal-Vicariance Analysis (DIVA). A main difference from previous studies is that the areas used in the analysis are defined based on actual distributions of the species of Liolaemidae, instead of areas defined arbitrarilyor based on other taxa. The ancestral area of Liolaemidae found by Fitch optimization is Prepuna on Argentina, Central Chile and Coastal Peru. Weighted Ancestral Area Analysis found Central Chile, Coquimbo, Payunia, Austral Patagonia and Coastal Peru. Dispersal-Vicariance analysis found an ancestral area that includes almost all the areas occupied by Liolaemidae, except Atacama, Coquimbo and Austral Patagonia. The results can be resumed on two opposing hypothesis: a restricted ancestral area for the ancestor of Liolaemidae in Central Chile and Patagonia, or a widespread ancestor distributed along the Andes. Some limitations of the methods were identified, for example the excessive importance of plesiomorphic areas in the cladograms.     

The colonizing history ofCapsella in Patagonia (South America)—Molecular and adaptive significance

Twenty-two provenances ofCapsella bursa-pastoris (Brassicaceae) from Patagonia and Tierra del Fuego and 13 provenances from the middle part of South America have been investigated for phenotypic traits (flowering, growth form parameters, fruit characters), isozymes (AAT, GDH, LAP), and RAPDs.Capsella is native to Europe and was introduced into South America in the 16th century. In Patagonia, we detected 23 different multilocus associations, but only five occurred in a frequency of more than 5%. By comparison with the geographic distribution patterns of multilocus genotypes in Europe, we inferred the ancestral European gene pools and the possible introduction routes. A particular multilocus genotype (MMG) was most frequent in the investigated area, and is native to the Iberian Peninsula. This genotype was with all probability introduced by Spaniards into central and northern South America, and it could have reached Patagonia from the north step by step. Other genotypes probably used a direct route from Europe, most likely via British sheep farmers in the second half of the 19th century. Rare genotypes in Patagonia may have been introduced recently by chance, or might be due to multilocus rearrangements in connection with rare outcrossing events. RAPD markers helped to trace colonial gene pools outside Europe and ancestral European gene pools and support the isozyme studies. Correlations between the life history traits and allozyme markers give evidence of the role adaptation may play in the colonizing process.     

Craniometric analysis in groups from tierra del Fuego/Patagonia and the peopling of the south extreme of the Americas

Five large craniometric samples from extinct tribes (Selk’nam, Kawéskar and Yámana) from Tierra del Fuego and from Patagonia have been analyzed through multivariate techniques. The purpose was to test the hypothesis of one or two different migration waves in the peopling of the south extreme of South America. A cluster analysis has been made, using the squared Euclidean distance as a measure of proximity, and the UPGMA and neighbor joining algorithms as a tree building method. The robustness of the branches has been assessed with bootstrap analysis through 100 random iterations of the original data set. Results show that, despite their cultural differences, the three hunter-gatherer groups. from Tierra del Fuego tend to cluster together, indicating a similar morphological pattern. This suggests that geographic distance (in latitudinal sense) is the main factor that influenced the differentiation of the human groups from Tierra del Fuego and Patagonia, from a single ancestral population.     

Areas of endemism of the Patagonian steppe: an approach based on insect distributional patterns using endemicity analysis

Aims  To delimit areas of endemism in the Patagonian steppe using endemicity analysis (EA), which evaluates areas of endemism by means of an endemicity index, and to compare the resulting endemic areas with those proposed for the Patagonian steppe by previous authors.
Location  The Patagonian steppe, a region of South America found approximately below parallel 36° S to the east of the Andes Mountains.
Methods  Distributional data for 159 species of insects collected in the Patagonian steppe, and consisting of 1317 georeferenced samples were used to identify areas of endemism. A data grid of presence and absence (with cells of 1° × 1°) was constructed. Initially, two different types of EA were performed, seeking areas defined by 'four or more' species. A first analysis was performed without taking into consideration those quadrats where no species had been recorded (empty quadrats), which in many cases meant a discontinuous distribution. The second analysis was performed assuming a continuous distribution for each species. A third analysis, assuming continuous distributions, was performed using 'three or more' as the number of species necessary for an area to be identified as an endemic area.
Results  In the first two analyses, EA recognized the same five areas of endemism: western Patagonia, south-western Payunia, northern Suabandean, southern Subandean and Austral Patagonia. The results of the third analysis allowed the identification of three more areas of endemism: northern Payunia, Chubutian and Santacrucian.
Main conclusions  We identified five areas of endemism for the Patagonian steppe, some of which have been defined in previous contributions. These areas are: Western Patagonia, Payunia and Subandean Patagonia (which can be divided into septentrional and meridional), Central Patagonia (Chubutence and Santacrucense) and Austral Patagonia.     

From East Gondwana to Central America: historical biogeography of the Alstroemeriaceae

Aim The Alstroemeriaceae is among 28 angiosperm families shared between South America, New Zealand and/or Australia; here, we examine the biogeography of Alstroemeriaceae to better understand the climatic and geological settings for its diversification in the Neotropics. We also compare Alstroemeriaceae with the four other Southern Hemisphere families that expanded from Patagonia to the equator, to infer what factors may have permitted such expansions across biomes. Location South America, Central America, Australia and New Zealand. Methods Three chloroplast genes, one mitochondrial gene and one nuclear DNA region were sequenced for 153 accessions representing 125 of the 200 species of Alstroemeriaceae from throughout the distribution range; 25 outgroup taxa were included to securely infer evolutionary directions and be able to use both ingroup and outgroup fossil constraints. A relaxed‐clock model relied on up to three fossil calibrations, and ancestral ranges were inferred using statistical dispersal–vicariance analysis (S‐DIVA). Southern Hemisphere disjunctions in the flowering plants were reviewed for key biological traits, divergence times, migration directions and habitats occupied. Results The obtained chronogram and ancestral area reconstruction imply that the most recent common ancestor of Colchicaceae and Alstroemeriaceae lived in the Late Cretaceous in southern South America/Australasia, the ancestral region of Alstroemeriaceae may have been South America/Antarctica, and a single New Zealand species is due to recent dispersal from South America. Chilean Alstroemeria diversified with the uplift of the Patagonian Andes c. 18 Ma, and a hummingbird‐pollinated clade (Bomarea) reached the northern Andes at 11–13 Ma. The South American Arid Diagonal (SAAD), a belt of arid vegetation caused by the onset of the Andean rain shadow 14–15 Ma, isolated a Brazilian clade of Alstroemeria from a basal Chilean/Argentinean grade. Main conclusions Only Alstroemeriaceae, Calceolariaceae, Cunoniaceae, Escalloniaceae and Proteaceae have expanded and diversified from Patagonia far into tropical latitudes. All migrated northwards along the Andes, but also reached south‐eastern Brazil, in most cases after the origin of the SAAD. Our results from Alstroemeria now suggest that the SAAD may have been a major ecological barrier in southern South America.     

Genetic relationships among American species of the genus Prosopis (Mimosoideae, Leguminosae) inferred from ITS sequences: evidence for long-distance dispersal

Aim  The genus Prosopis includes 44 species and has a pseudoamphitropical, disjunct distribution. We aimed to determine whether American Prosopis sections arose in North or South America, and to explain the current distribution of their species on the basis of their genetic relationships.
Location  South-western USA, Mexico, Caribbean Antilles, Peru–Ecuador, central and northern Argentina, south-western Argentina (Patagonia) and Cuyo, south-western Asia and northern Africa.
Methods  Internal transcribed spacer fragments from 21 species of Prosopis were sequenced and the data were used to analyse the phylogenetic relationships using Microlobius and Mimosa as outgroups. Genetic distances were calculated to estimate the degree of divergence. Dispersal–vicariance (DIVA) analysis was conducted to help understand the biogeographical history of the genus.
Main conclusions  The sections Strombocarpa and Algarobia are not monophyletic. Prosopis argentina (section Monilicarpa ) and the species of Algarobia are included in single clade. The phylogeny, DIVA analysis, and the pattern of genetic distances indicate that the ancestral area for the American species was wide, from south-western USA to Central and northern Argentina. Successive vicariance events split this area, and long-distance dispersal episodes (perhaps mediated by birds) led to recolonizations from North to South America, and vice versa .     

Weighted ancestral area analysis and a solution of the redundant distribution problem

A new cladistic method for the estimation of ancestral areas is based on reversible parsimony in combination with a weighting scheme that weights steps in positionally plesiomorphic branches more highly than steps in positionally apomorphic branches. By applying this method to cladograms of human mitochondrial DNA, the method is superior to previously proposed algorithms. The method is also an appropriate tool for the solution of the redundant distribution problem in area cladograms. Under the assumption of allopatric speciation, redundant distributions, i.e., sympatry of sister groups, show that dispersal has occurred; thus, the ancestral area of at least one sister group was smaller than the combined distribution of its descendants. With the weighted ancestral area analysis, the ancestral areas can be confined and at least some dispersal events can be distinguished from possible vicariance events. As applied to a cladogram of the Polypteridae, weighted ancestral area analysis is superior to Brooks parsimony analysis (assumption 0) and component analysis under assumptions 1 and 2 (Nelson and Platnick, 1981, Systematics and biogeography: Cladistics and vicariance. Columbia Univ. Press, New York.) in resolving redundancies. The results of the weighted ancestral area analysis may differ from the results of dispersal-vicariance analysis, because the rules of dispersal-vicariance analysis indirectly favor the questionable assumption that the ancestral species occupied only one unit area.     

Ancestral Area Analysis of the Genus Caragara （Leguminosae）

Caragana has a temperate Asian distribution. Based on the phylogeny and 13 distributionalareas of this genus, its ancestral area was studied via the ancestral area analysis suggested by Bremer(1992), Ronquist (1994) and Hausdorf (1997). The results indicate that three areas, Far East-NortheastChina, Altai-Sayan and North China-Qinling Mountains (Mts) are likely the ancestral areas. Linking to theviewpoints of the Holarctic origin for north temperate flora, Far East-Northeast China seems more likely tobe the ancestral area. According to the three ancestral areas isolated geographically and the analysis inthe present study, as well as former biogeographical analysis of this genus, it is suggested that Caraganaspeciation is mainly in the mode of vicariance rather than dispersal, and dispersed is often in shortdistance.     

锦鸡儿属(豆科)祖先分布区分析(英文)

锦鸡儿属(Caragana)是一个温带亚洲分布属。在我们对这一属系统发育树以及13个分布区的基础上,重点采用Bremer(1992),Ronquist(1994)和Hausdorf(1997)提出的方法,进行本属祖先分布区的分析和探讨。结果表明,3种方法均表明远东-我国东北,阿尔泰-萨彦岭以及华北-秦岭是可能的祖先分布区。结合北温带植物类群属的北方起源学说,认为远东-我国东北为原始分布区的可能性更大一些。同时这三个分布区彼此地理上是隔离的,也恰是本属内一个较原始种树锦鸡儿(Caraganaarborescens)的分布区,结合我们以前的分析生物地理学研究,认为隔离分化是本属最重要的物种形成方式,扩散是次要的而且是短距离的扩散。     

锦鸡儿属(豆科)祖先分布区分析

锦鸡儿属(Caragana)是一个温带亚洲分布属.在我们对这一属系统发育树以及13个分布区的基础上,重点采用Bremer(1992),Ronquist(1994)和Hausdorf(1997)提出的方法,进行本属祖先分布区的分析和探讨.结果表明,3种方法均表明远东-我国东北,阿尔泰-萨彦岭以及华北-秦岭是可能的祖先分布区.结合北温带植物类群属的北方起源学说,认为远东-我国东北为原始分布区的可能性更大一些.同时这三个分布区彼此地理上是隔离的,也恰是本属内一个较原始种树锦鸡儿(Caragana arborescens)的分布区,结合我们以前的分析生物地理学研究,认为隔离分化是本属最重要的物种形成方式,扩散是次要的而且是短距离的扩散.     

A pair of new sister species of Loneura (Psocodea, 'Psocoptera', Ptiloneuridae) from Valle del Cauca, Colombia, representing a new infrageneric group

Two sister species of Loneura, from Valle del Cauca, Colombia, are here described and illustrated. They constitute a new species group that modifies the scheme of classification, proposed earlier for the genus by García Aldrete et al. (2011b). The new group is characterized by having the central sclerite of the male hypandrium with four posterior projections. A key to the males of Group II is included. The types are deposited in the Entomological Museum of the Universidad del Valle. Colombia may prove to be the most species rich area for Loneura.     

Phylogenetic relationships within a patagonian clade of reptiles (Liolaemidae: Phymaturus) based on DNA sequences and morphology

Phymaturus is a clade of lizards that occurs at moderate to high elevations in western Argentina and the adjacent central region of Chile, as well as in various volcanic plateaus of the Patagonian region of Argentina. This genus had previously been divided into two groups: the patagonicus and the palluma groups. In this study, we analyzed relationships within the patagonicus group. The data set was built for 23 species plus nine other terminal taxa of undetermined taxonomic status. In total, 10,631 bp (ND4, Cytb, 12S, COI, five protein coding nuclear genes and seven anonymous nuclear loci) and 254 morphological characters were analyzed in a combined data set for 35 ingroup taxa and nine outgroups. We also ran separate DNA sequence and morphological data sets. We identified four main clades, and revealed congruencies and incongruences with previous studies. The indistinctus clade is recovered as the most basal within the patagonicus group in the strict parsimony analysis, while the somuncurensis clade is the most basal under Bayesian inference. The previously recovered calcogaster clade resulted paraphyletic in both analyses and part of their species are included in a redefined somuncurensis clade. We found low support at basal nodes provoked in part by contradictory evidence shown by rogue taxa. We show the phylogenetic information given by each partition/marker and how they contribute to relationships found in the total evidence analysis. We discuss the phylogenetic position of Phymaturus manuelae, Phymaturus tenebrosus, and Phymaturus patagonicus.     

Towards a model of postglacial biogeography in shallow marine species along the Patagonian Province: lessons from the limpet Nacella magellanica (Gmelin, 1791)

ABSTRACT: BACKGROUND: Patagonia extends for more than 84,000 km of irregular coasts is an area especially apt to evaluate how historic and contemporary processes influence the distribution and connectivity of shallow marine benthic organisms. The true limpet Nacella magellanica has a wide distribution in this province and represents a suitable model to infer the Quaternary glacial legacy on marine benthic organisms. This species inhabits ice-free rocky ecosystems, has a narrow bathymetric range and consequently should have been severely affected by recurrent glacial cycles during the Quaternary. We performed phylogeographic and demographic analyses of N. magellanica from 14 localities along its distribution in Pacific Patagonia, Atlantic Patagonia, and the Falkland/Malvinas Islands. RESULTS: Mitochondrial (COI) DNA analyses of 357 individuals of N. magellanica revealed an absence of genetic differentiation in the species with a single genetic unit along Pacific Patagonia. However, we detected significant genetic differences among three main groups named Pacific Patagonia, Atlantic Patagonia and Falkland/Malvinas Islands. Migration rate estimations indicated asymmetrical gene flow, primarily from Pacific Patagonia to Atlantic Patagonia (Nem=2.21) and the Falkland/Malvinas Islands (Nem=16.6). Demographic reconstruction in Pacific Patagonia suggests a recent recolonization process (< 10 ka) supported by neutrality tests, mismatch distribution and the median-joining haplotype genealogy. CONCLUSIONS: Absence of genetic structure, a single dominant haplotype, lack of correlation between geographic and genetic distance, high estimated migration rates and the signal of recent demographic growth represent a large body of evidence supporting the hypothesis of rapid postglacial expansion in this species in Pacific Patagonia. This expansion could have been sustained by larval dispersal following the main current system in this area. Lower levels of genetic diversity in inland sea areas suggest that fjords and channels represent the areas most recently colonized by the species. Hence recolonization seems to follow a west to east direction to areas that were progressively deglaciated. Significant genetic differences among Pacific, Atlantic and Falkland/Malvinas Islands populations may be also explained through disparities in their respective glaciological and geological histories. The Falkland/Malvinas Islands, more than representing a glacial refugium for the species, seems to constitute a sink area considering the strong asymmetric gene flow detected from Pacific to Atlantic sectors. These results suggest that historical and contemporary processes represent the main factors shaping the modern biogeography of most shallow marine benthic invertebrates inhabiting the Patagonian Province.     

Thermal ecology of two sympatric saxicolous lizards of the genus Phymaturus from the Payunia region (Argentina)

We evaluated the thermal biology of two sympatric saxicolous species of the genus Phymaturus, endemic from the Argentine Payunia region. Taking into account that the distributional range of Phymaturus roigorum (the largest species) is greater than the range of P. payuniae, we evaluated the habitat (type of rocks) used by these species. We recorded body temperature and operative temperatures in different habitats, and we determined the preferred body temperature in the laboratory. We compared the thermal quality of habitats occupied and not occupied by Phymaturus payuniae, and the accuracy and effectiveness of thermoregulation between species.     

Biogeography of the Limacoidea sensu lato (Gastropoda: Stylommatophora): vicariance events and long-distance dispersal

Aim Reconstruction of the historical biogeography of the Limacoidea sensu lato (including the Staffordiidae, Dyakiidae, Gastrodontoidea, Parmacelloidea, Zonitidae, Helicarionoidea and Limacoidea). Evaluation of the relative importance of dispersal and its consequences. Location World‐wide. Methods Weighted ancestral area analysis. Results The ancestral areas of the individual clades have been delimited using weighted ancestral area analysis and a sequence of possible vicariance and dispersal events has been suggested. The results of the ancestral area analysis have tentatively been correlated with Cretaceous and Tertiary palaeogeography. The widely overlapping distribution patterns of several families of the Limacoidea testify to extensive dispersal events. Dispersal capacity of land snails is correlated with body size. The significant negative correlation between body size and distribution area size corroborates the importance of passive dispersal for the evolution of the distribution patterns. Main conclusions The existence of extensive dispersal events of poor active dispersers like land snails diminishes the importance of recent distribution patterns for the reconstruction of palaeogeography. On the other hand, dispersal ensures that biogeographical data reflect the geographical configurations at a given time and renders the use of palaeobiogeographic data for the reconstruction of palaeogeographic configurations of the respective age possible.     

ANCESTRAL CHARACTER ESTIMATION UNDER THE THRESHOLD MODEL FROM QUANTITATIVE GENETICS

Evolutionary biology is a study of life's history on Earth. In researching this history, biologists are often interested in attempting to reconstruct phenotypes for the long extinct ancestors of living species. Various methods have been developed to do this on a phylogeny from the data for extant taxa. In the present article, I introduce a new approach for ancestral character estimation for discretely valued traits. This approach is based on the threshold model from evolutionary quantitative genetics. Under the threshold model, the value exhibited by an individual or species for a discrete character is determined by an underlying, unobserved continuous trait called “liability.” In this new method for ancestral state reconstruction, I use Bayesian Markov chain Monte Carlo (MCMC) to sample the liabilities of ancestral and tip species, and the relative positions of two or more thresholds, from their joint posterior probability distribution. Using data simulated under the model, I find that the method has very good performance in ancestral character estimation. Use of the threshold model for ancestral state reconstruction relies on a priori specification of the order of the discrete character states along the liability axis. I test the use of a Bayesian MCMC information theoretic criterion based approach to choose among different hypothesized orderings for the discrete character. Finally, I apply the method to the evolution of feeding mode in centrarchid fishes.     

Sexual selection on multivariate phenotype in wild and mass-reared Ceratitis capitata (Diptera: Tephritidae)

Males with a larger thorax and narrower face were found to be favoured by directional sexual selection in a previous field cage experiment where Ceratitis capitata males from the Seib 6-96 genetic sexing strain competed with wild males from Alto Valle (Patagonia) for the possession of wild females. Targets of sexual selection, however, might differ between wild and laboratory females as a response to adaptation to mass-rearing conditions. To evaluate possible divergences on the targets of sexual selection as a by-product of adaptation to mass-rearing conditions, field cage tests were performed with both wild and laboratory females. To avoid possible bias due to correlation among the measured traits (eye length [EL], face width [FW], head width [HW], and thorax length [TL]), a multivariate analysis was applied. Consistent with the previous experiment, the results indicated that TL and FW are probable targets of directional sexual selection independently of female strain. However, laboratory females were less selective than wild ones. Additionally, correlational sexual selection was detected acting on the multivariate phenotype. The effects of correlational selection overlap with those of directional selection on each single trait. The analysis of mating pair characteristics showed patterns that do not match the expectations for a random mating system. The current analysis indicates that during mating pair formation two processes overlap. On the one hand, sexual selection favours males with larger size (TL) and narrower faces (FW). This effect occurs in both wild and laboratory females. In addition, assortative mating based on both phenotype and origin was also observed.     

Review of the genus Hippidion Owen, 1869 (Mammalia: Perissodactyla) from the Pleistocene of South America

This review of Hippidion is based on a multivariate analysis of the foot, and some morphological characteristics of the skull and dentition. We recognize only one genus ( Hippidion ) including all the hippidiform horses, with three different species: H. principale, H. devillei and H. saldiasi. The latter species is stratigraphically and geographically restricted to the period from 13000 to 8000 years BP in the southern part of South America. Hippidion principale and H. devillei have a large geographical distribution (Argentina, Bolivia, Chile, Perú, Uruguay, Brazil) through the Upper Pliocene-Upper Pleistocene. Both species show some morphometric variations across their geographic range; these features may result from the environmental characteristics.     

Is inaccurate mimicry ancestral to accurate in myrmecomorphic spiders (Araneae)?

Batesian mimicry, in which a palatable organism resembles an unpalatable model, is widespread among taxa. Batesian mimics can be classified based on their level of accuracy (inaccurate or accurate). Using data on defensive strategies in more than 1000 species of spiders I investigated whether inaccurate myrmecomorphy is ancestral to accurate myrmecomorphy. I classified 233 myrmecomorphic species into four accuracy levels based on morphology, from poor inaccurate mimics to very accurate ones. I found that myrmecomorphy has evolved independently in 16 families and 85 genera. On the family‐level phylogeny, the occurrence of myrmecomorphy is confined mainly to families branching later on the tree, from the RTA clade. On the generic‐level phylogenies in Corinnidae and Salticidae, myrmecomorphy is not only of derived origin. Estimated ancestral state was non‐mimetic in Salticidae and poor inaccurate myrmecomorphy in Corinnidae. Thus, inaccurate myrmecomorphic spider mimics seem rather ancestral to accurate but additional analysis on species‐level phylogenies is needed to support this conclusion. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 113 , 97–111.