Coral and sandstone reef-habitats in north-western Sri Lanka: patterns in the distribution of coral communities

Coral and sandstone reefs cover a significant part ofSri Lanka‘s continental shelf and contain incomparison unique reef structures. Despite this, reefsin this region of the northern Indian Ocean havereceived little research attention. In an attempt tobetter understand these ecosystems and their innatecharacter, this study describes the variety of reeftypes and habitats that are found in this area. Thestudy concentrated on four major reef areas: the BarReef Marine Sanctuary (BRMS), Kandakuliya Reefs,Talawila Reef, and Mampuri Reef. These reefs showedapparent differences in habitat structure in terms ofthe proportion coral cover, coral species compositionand structural complexity. Two reef types were presentwithin the continental shelf of BRMS: coral andsandstone patch-reefs. Acropora was the mostdominant coral genera however in total 118madreporarian species and 50 coral genera wererecorded in the sanctuary. Distinct habitats wereidentified within reef types including shallow reefflat, shallow patch reef, deep reef flat and Porites dome habitats for the coral-reef patcheswhile the sandstone-reef patches were divided intostructured and flat sandstone reef habitats.Kandakuliya Reef south of BRMS was by large dominatedby coral rubble. Talawila Reef and Mampuri Reef showedunique structures with the former being dominated bymassive corals and the latter mainly containingsandstone structures. In addition to factors such asbio-erosion, sedimentation, hydrodynamics, andrecruitment or colonisation processes, some reefs wereclearly under significant direct human impact whichappeared to play a dominant role in habitatstructuring. However, type and degree of humandisturbance varied among the reefs. Habitat alterationat Kandakuliya Reef was the result of intense fishingusing destructive fishing methods. Talawila Reef andMampuri Reef was also influenced by fishing activitiesthough reef structure seemed less affected. This revised version was published online in July 2006 with corrections to the Cover Date.     

Within and between day variability in coral reef fish assemblages: Implications for fish community surveys

Coral reef ecosystems are under increasing anthropogenic pressures making it ever more important to monitor changes in fish communities to implement appropriate management. In contrast to long-term spatial and temporal variation which has been extensively documented, little work has been carried out to identify variability in fish assemblages on short time scales, with few studies testing patterns of fish assemblages between and within days. Here we investigated the diurnal changes in species richness, relative abundance and assemblage composition in a shallow coral reef fish community in Egypt. To do so, a section of coral reef was filmed during the morning (0600 h), midday (1000 and 1400 h) and afternoon (1800 h) over eleven days. Dusk (0600 h) and dawn samples (1800 h) showed higher species richness compared to late morning (1000 h) and mid-day samples (1400 h) and borderline significantly higher numbers of total individuals, likely associated with feeding activity and predator avoidance. Assemblage composition varied across days and time-of-day, showing greater variability during dusk and dawn associated with a transition between day-time and night-time assemblages. Our results have implications for designing coral reef fish surveys, emphasising that short-term changes in fish communities should be considered when designing experiments to monitor fish assemblages over time. Where possible, we suggest increasing replication within sites and time scales or randomising data within a specific time window at all sites, looking to exclude dusk and dawn.     

Postsettlement movement patterns and homing in a coral-associated fish

Coral-associated gobies are highly specialized reef fishes withhigh host-coral fidelity. Flexibility in habitat choice, however,is important to compensate for potential habitat alterationor loss, but detailed information about the postsettlement movementbehavior of such gobies is lacking. We examined movement patternsin Gobiodon histrio, both under natural conditions and duringsubsequent field experiments, involving breeding pair or partnerremoval from 3 of the 4 investigation plots. Additionally, weinvestigated homing behavior, and 2 aquaria experiments weredesigned to assess home coral and partner recognition of adultfish taken from breeding pairs. Under natural conditions, themovement rate was high for single adults, whereas breeding pairsshowed high home-coral fidelity. Manipulations revealed littlechange of natural patterns except in single adults, which slightlydecreased their movement rate in the breeding pair removal plot.In the homing experiment, 17% of tested fish returned to theirhome coral even after displacement of 4 m, and homing successwas much higher at shorter distances (100% at 0.5 m, 53% at2.25 m). In the aquarium, G. histrio exhibited higher recognitionof its home-coral colony (75%) than of its breeding pair partner(60%). Our study shows that G. histrio frequently moves betweencorals, although this depends on the social status (juvenile,single adult, breeding pair) of the individuals. The high proportionand movement rate of single adults indicate low sensitivityto habitat alteration but also limited high-quality habitatsin which breeding pairs could be established. Hence, vulnerabilityto habitat loss increases when individuals breed.     

An analysis of fish‐habitat associations on disturbed coral reefs: chaetodontid fishes in New Caledonia

A concordance analysis was used to study the simultaneous influence of several environmental data sets on chaetodontid (butterflyfish) distributions. This multivariate and multitable method enabled the correlation of three types of benthic characteristics (mineral substratum, coverage of structural species and large echinoderms) with butterflyfish abundances in two bays of the urban centre of Nouméa (New Caledonia). The first concordance axis was related to a gradient in the coverage of branching corals. This disturbance gradient compared damaged reef areas dominated by long‐spined sea urchins to areas with an extensive coverage of branching corals. The abundance of corallivorous chaetodontids was related to this gradient, supporting the view of corals as a food and shelter source for these fishes. The second concordance axis was interpreted as a gradient of heterogeneity in the coverage of benthic life‐forms. The abundance of omnivorous chaetodontids was related to this gradient. Thus, the concordance axes defined two key components of habitat structure that were related to the entire fish community structure.     

Scarid Biomass on the Northern Great Barrier Reef: The Influence of Exposure, Depth and Substrata

Here I investigate whether patterns of scarid biomass across the continental shelf of the northern Great Barrier Reef can be explained by species associating with particular characteristics of the reef environment. Despite the widely documented tendency of scarids to graze and browse over exposed calcareous reef surfaces, scarid biomass was not significantly correlated with the availability of feeding substrata for any species investigated. Indeed positive correlations between biomass and substrata variables were rare for the 18 species investigated, indicating that biomass in these taxa was not strongly reliant on the availability of preferred substrata quantified at the spatial scale of sites (1620m²). Rather, species specific biomass was commonly highly variable between sites, suggesting that local aggregation of scarids commonly occurs at this scale. Such spatial patchiness potentially reflects the effects of spatially variable recruitment, fishes associating with unmeasured habitat characteristics or aggregating prior to spawning. Despite variability in the biomass of individual species between replicate sites within exposure regimes, exposure was generally a far more reliable predictor of biomass than the other variables quantified. This study provides little evidence to indicate that adult scarids have strict habitat requirements, rather they appear to be habitat generalists whose biomass is strongly influenced by exposure but weakly related to the cover of particular reef substratum.     

Comparative efficiency of clove oil and rotenone for sampling tropical reef fish assemblages

A quantitative examination of the reef fish assemblage at Orpheus Island, Great Barrier Reef, contrasting clove oil and rotenone, sampled 365 individuals of 47 species with clove oil v. 536 individuals of 53 species with rotenone. Number of species and individuals were not found to differ significantly between the two techniques, largely due to variation among samples. Neopomacentrus bankieri (Pomacentridae) and Eviota queenslandica (Gobiidae) were the most dominant in the samples using either technique. Although the samples appeared to be comparable, only 31 species (45%) in eight families were common to both techniques. Fishes often recovered before collection when using clove oil and were not driven out of the reef during induction to anaesthesia. Although the samples collected with clove oil approximate the results obtained using rotenone, enclosed rotenone stations are the preferred method for providing relatively complete quantitative samples.     

Local ecological impacts of regional biodiversity on reef fish assemblages

Aim We examined comparative data for cryptobenthic reef fishes to determine how variation in regional species richness relates to local species richness, abundance, and taxonomic and trophic composition, and to test whether systems with higher species richness exhibit finer habitat partitioning. Locations Lizard Island, Great Barrier Reef (GBR), Australia; Bahía de Loreto, Gulf of California (GoC), Mexico. Methods Cryptobenthic reef fish assemblages from four habitats (coral heads, rubble, and horizontal and vertical surfaces of boulders) were collected using clove oil. Differences in density, species richness and biomass were examined between regions and among habitats. Habitat associations were identified for each habitat/location based on multivariate ordination, and the statistical significance of patterns was tested using analysis of similarity (ANOSIM). In addition, the trophic group composition of the assemblages for both regions was examined. Results A total of 91 species in 20 families were recorded (GBR, 66 species; GoC, 25 species). Total and habitat species richness were higher on the GBR, whereas biomass was higher in the GoC. No difference in fish density between regions was found. Habitat division among assemblages was greater in the depauperate GoC. Only coral head associations proved to be distinctive on the GBR, whereas three sample groups were found in the GoC (coral heads, horizontal boulders and vertical boulders/rubble). Trophic composition in the two regions was markedly different, with omnivores dominating the GBR fauna and planktivores the GoC. Main conclusions A positive regional–local relationship in fish diversity was found between regions, but fish abundance in both regions remained similar. Contrary to expectations, habitat partitioning, at a community level, was greater in the depauperate GoC. Differences in trophic composition and patterns of habitat use appear to reflect the disparate history of the regions, whereas patterns of abundance may reflect the influence of fundamental relationships between size and abundance in communities. This study highlights the potential of reef faunas to conform to universal numerical trends while maintaining an ability to respond ecologically to local/evolutionary influences. The GoC fauna appears to be exceptionally vulnerable to natural and anthropogenic disturbance owing to the high numerical dominance of habitat‐specific species and to the limited potential for functional redundancy within the system.     

Thresholds in seascape connectivity: the spatial arrangement of nursery habitats structure fish communities on nearby reefs

Ecosystems are linked by the movement of organisms across habitat boundaries and the arrangement of habitat patches can affect species abundance and composition. In tropical seascapes many coral reef fishes settle in adjacent habitats and undergo ontogenetic habitat shifts to coral reefs as they grow. Few studies have attempted to measure at what distances from nursery habitats these fish migrations (connectivity) cease to exist and how the abundance, biomass and proportion of nursery species change on coral reefs along distance gradients away from nursery areas. The present study examines seascape spatial arrangement, including distances between habitats, and its consequences on connectivity within a tropical seascape in Mozambique using a seascape ecology approach. Fish and habitat surveys were undertaken in 2016/2017 and a thematic habitat map was created in ArcGIS, where cover and distances between habitat patches were calculated. Distance to mangroves and seagrasses were significant predictors for abundance and biomass of most nursery species. The proportions of nursery species were highest in the south of the archipelago, where mangroves were present and decreased with distance to nurseries (mangroves and seagrasses). Some nursery species were absent on reef sites farthest from nursery habitats, at 80 km from mangroves and at 12 km from seagrass habitats. The proportion of nursery/non-nursery snapper and parrotfish species, as well as abundance and biomass of seagrass nursery species abruptly declined at 8 km from seagrass habitats, indicating a threshold distance at which migrations may cease. Additionally, reefs isolated by large stretches of sand and deep water had very low abundances of several nursery species despite being within moderate distances from nursery habitats. This highlights the importance of considering the matrix (sand and deep water) as barriers for fish migration.     

Effects of Habitat Connectivity on the Abundance and Species Richness of Coral Reef Fishes: Comparison of an Experimental Habitat Established at a Rocky Reef Flat and at a Sandy Sea Bottom

Coral reef fish assemblages are widely recognized for the coexistence of numerous species, which are likely governed by both coral diversity and substratum complexity. However, since coral reefs provide diverse habitats due to their physical structure and different spatial arrangements of coral, findings obtained from an isolated habitat cannot necessarily be applied to fish assemblages in other habitats (e.g. continuous habitats). The aim of this study, therefore, was to determine by a field experiment whether habitat connectivity (spatial arrangement of coral colonies) affects abundance and species richness of fishes in an Okinawan coral reef. The experiment consisted of transplanted branching coral colonies at a 4m×8m quadrat at both a rocky reef flat and sandy sea bottom. Generally, the abundance of fishes was greater at the sandy sea bottom, especially for three species of pomacentrids, one species of labrids, one species of chaetodontids and two species of apogonids. Species–area curves showed that the species richness of fishes was significantly greater in the quadrat at the sandy sea bottom at 3, 6 and 9 months after the start of the experiment. The rate of increase in abundance of fishes per area was significantly greater in the quadrat at the sandy sea bottom over the study period. The results of rarefaction analyses showed that the rate of increase in species richness per abundance was significantly higher in the quadrat at the sandy sea bottom in the juvenile settlement period, indicating that the magnitude of dominance by particular species was greater at the sandy sea bottom habitat. Our findings suggest that habitat connectivity affects the abundance and species richness of coral reef fishes, i.e. the isolated habitat was significantly more attractive for fishes than was the continuous habitat. Our findings also suggest that the main ecological factors responsible for organization of fish assemblage at a continuous habitat and at an isolated habitat are different.     

黄山陈村水库上游河源溪流的鱼类群落及其纵向梯度格局

确定鱼类群落的分布格局及其对人类活动的响应,是合理保护、恢复和管理鱼类多样性的基础。基于2011年5月和10月自黄山陈村水库上游3条河源溪流共39个样点的调查数据,比较研究了溪流间鱼类群落及其纵向梯度格局的异同,着重探讨了人类活动对溪流鱼类群落纵向梯度格局的影响。研究结果显示,同人为干扰较轻的舒溪相比,人为干扰严重的浦溪和麻溪中水宽、底质和植被覆盖率等局域栖息地条件显著变化,这造成了后者的鱼类多样性显著下降及物种组成的显著变化,主要表现为敏感性的地方物种(如宽鳍鱲、光唇鱼、原缨口鳅等)数量减少、耐受性的广布物种(如泥鳅、麦穗鱼、高体鰟鲏等)数量增多。舒溪的鱼类物种数及其组成均与海拔显著相关,但这种"海拔-鱼类群落"关系在麻溪和浦溪中削弱甚至消失。底质、植被覆盖率对舒溪鱼类群落具有重要影响,但对浦溪和麻溪鱼类群落却无显著影响。研究结果表明,在子流域空间尺度上,诸如城镇化发展、土地利用、河道治理等人类活动可通过对局域栖息地条件的影响,导致溪流鱼类多样性下降及其物种组成的变化,破坏鱼类群落的纵向梯度格局,并改变栖息地与鱼类群落之间的联系。     

Seabird nutrient subsidies alter patterns of algal abundance and fish biomass on coral reefs following a bleaching event

Cross‐ecosystem nutrient subsidies play a key role in the structure and dynamics of recipient communities, but human activities are disrupting these links. Because nutrient subsidies may also enhance community stability, the effects of losing these inputs may be exacerbated in the face of increasing climate‐related disturbances. Nutrients from seabirds nesting on oceanic islands enhance the productivity and functioning of adjacent coral reefs, but it is unknown whether these subsidies affect the response of coral reefs to mass bleaching events or whether the benefits of these nutrients persist following bleaching. To answer these questions, we surveyed benthic organisms and fishes around islands with seabirds and nearby islands without seabirds due to the presence of invasive rats. Surveys were conducted in the Chagos Archipelago, Indian Ocean, immediately before the 2015–2016 mass bleaching event and, in 2018, two years following the bleaching event. Regardless of the presence of seabirds, relative coral cover declined by 32%. However, there was a post‐bleaching shift in benthic community structure around islands with seabirds, which did not occur around islands with invasive rats, characterized by increases in two types of calcareous algae (crustose coralline algae [CCA] and Halimeda spp.). All feeding groups of fishes were positively affected by seabirds, but only herbivores and piscivores were unaffected by the bleaching event and sustained the greatest difference in biomass between islands with seabirds versus those with invasive rats. By contrast, corallivores and planktivores, both of which are coral‐dependent, experienced the greatest losses following bleaching. Even though seabird nutrients did not enhance community‐wide resistance to bleaching, they may still promote recovery of these reefs through their positive influence on CCA and herbivorous fishes. More broadly, the maintenance of nutrient subsidies, via strategies including eradication of invasive predators, may be important in shaping the response of ecological communities to global climate change.     

Species-specific habitat distribution of coral reef fish assemblages in relation to habitat characteristics in an Okinawan coral reef

We determined the species-specific habitat associations of coral reef fishes and environmental characteristics in an Okinawan coral reef in Japan. We focused on three families (Pomacentridae, Gobiidae and Labridae) and attempted to determine differences in habitat utilization. We selected six sites along the coast of Amitori Bay, from the entrance to the innermost part, in order to cover a wide range of habitat characteristics (exposed habitat, semi-exposed habitat and sheltered habitat). The species diversity of coral assemblages was greater at the exposed and semi-exposed habitats, whereas branching coral mostly covered the sheltered habitat. The environmental factors that determine the species-specific spatial association in fishes differed among families. Both biological characteristics (coral morphology and coral species diversity) and physical characteristics (water depth and wave exposure) affected the spatial association of pomacentrids and gobiids. In contrast, physical characteristics such as substrate complexity and water depth affected the species-specific spatial association of labrid species. Further study is needed to determine the ecological factors that regulate the species-specific habitat preference in Okinawan coral reefs.     

Spatio-temporal patterns of fish assemblages in a large regulated alluvial river

1. The River Durance, the last alpine tributary of the River Rhône, is a large, braided alluvial hydrosystem. Following large-scale regulation, flow downstream of the Serre-Ponçon dam has been maintained at 1/40th of previous annual mean discharge. To assess the effects of historical disturbances, fish assemblages and habitat use were analysed during five summers in a representative reach of the middle Durance.
2. Habitat availability and use were assessed with a multi-scale approach including the variables water depth, current velocity, roughness height of substratum, amount of woody debris and lateral/longitudinal location. Eighteen fish species were sampled by electrofishing in 289 habitat sample units.
3. Partial least square (PLS) regression showed that taxa were mainly distributed according to relationships between their total length and water depth/velocity variables. Fish assemblage composition was also related to roughness height as well as distance from the bank or to the nearest large woody debris. However, PLS regression revealed no significant differences in habitat selection between two periods of varying hydromorphological stability.
4. Fish distribution patterns and density were related to proximity to the bank and cover, indicating that local scale variables need to be considered in conservation and restoration programmes.     

The Structures and Dynamics of Fish Communities in an Okinawan Coral Reef: Effects of Coral-based Habitat Structures at Sites with Rocky and Sandy Sea Bottoms

Although there have been many studies on ecological factors responsible for the organization of reef fish communities, most of the studies have focused on isolated habitats. However, findings from isolated habitats cannot necessarily be applied to fish communities in other habitats (e.g., a continuous habitat). In this study, therefore, we examined the structures of fish communities (abundance, species richness and species composition), and the dynamics of fish communities (seasonal changes in abundance, species richness and species composition) over a 2-year period in two different habitats (continuous habitat and isolated habitat) in an Okinawan coral reef. We established eight permanent quadrats (8m × 8m) on a rocky reef flat (continuous habitat) and rock reef patches surrounded by a sandy sea bottom (isolated habitat). The abundance and species richness of fishes such as pomacentrids, labrids, chaetodontids and acanthurids were greater in quadrats located in the continuous habitat, whereas those of blenniids, gobiids and mullids were greater in quadrats located in the isolated habitat. This caused marked differences between the fish community structure at the two sites. Seasonal and annual changes in fish community structure were relatively small at the continuous habitat site (>0.7 similarity based on C index) but were large at the isolated habitat site (C < 0.4), indicating that the fish community structure was relatively stable at the continuous habitat site but unstable at the isolated habitat site throughout the study period. Spatial differences between the fish community structures in the four quadrats at the continuous habitat site were small (C > 0.65 in most sites), but these differences were large at the isolated habitat site (C < 0.4). Our findings suggest that habitat structure (spatial arrangement of habitats) affects both spatial and seasonal differences in the reef fish community structure. The results also suggest that the main mechanisms underlying organization of reef fish communities in continuous and isolated habitats are different.     

Effects of high-relief structures on cold temperate fish assemblages: A field experiment

High-relief structures may influence the abundance and diversity of reef-associated fish. We conducted a field experiment to investigate whether the presence of vertical structures (PVC pipes) affects fish communities on artificial reefs. The effect of the height of the structures (1 and 3 m) was also tested. Furthermore, the effects on fish of placing artificial reefs on otherwise featureless bottoms were quantified. Algal and macro-invertebrate colonization of the reefs was also recorded. The experiment was carried out on the west coast of Sweden over a period of 1 year. The vertical structures had a positive effect on fish abundance but not on diversity. The height of the structures did not, however, influence the fish communities. Natural as well as urban vertical structures on the seafloor could have a positive effect on local fish abundance. The positive effects of artificial reefs on total fish abundance and diversity were immediate. Of the 10 species recorded, two, the black goby Gobius niger and the goldsinny wrasse Ctenolabrus rupestris, dominated over the whole survey period. There were significant temporal differences in fish abundance, and diversity increased with time.     

Within‐lake distribution patterns of fish assemblages: the relative roles of spatial,temporal and random environmental factors in assessing fish assemblages using gillnets in a large and shallow temperate lake

In this study, the relative role of spatio‐temporal factors and associated environmental variables (water transparency and temperature) were quantified in relation to gillnet samples of fishes in a large and shallow lake (Lake Balaton, Hungary). Most of the variance (56·1%) in the relative abundance data (%) was related to the vertical segregation of fishes. This gradient substantially affected the catch per unit effort (CPUE) by number of the dominant species, the surface‐oriented bleak Alburnus alburnus and the benthic common bream Abramis brama. It also influenced total CPUE, mean fish mass and species richness and diversity. At the lake level, horizontal habitat heterogeneity (i.e. littoral v. offshore) accounted for only 8·3% of the total variance in relative abundance data, but was important in structuring the CPUE of the ruffe Gymnocephalus cernua and the pikeperch Sander lucioperca. The longitudinal environmental gradient (i.e. lake basin), year and season of sampling, water transparency and temperature had significant effects on relative abundance only at the habitat level, but were also important components of variability of CPUE in some species at the lake level. As sampling schemes need to consider the main gradients in fish assemblage distributions, the use of surface and pelagic gillnets should be more intensively incorporated in the study and monitoring of fish assemblages in shallow lakes and lake habitats.