红酵母属同工酶酶谱分析及其分类研究

分析了24株红酵母菌的苹果酸脱氢酶、超氧化物歧化酶和酯酶的电泳图谱,并将同工酶酶谱资料进行了聚类分析。结果发现：参试红酵母属内各种间3种同工酶酶谱差异明显,24株红酵母菌被明显分为A、B、C、D、E5群,每一群分别代表一个种（B群除外）,其中A群的18个菌株为Kreger-vanRij（1984）系统中的深红酵母（Rhodotorularubra）,又可分为2个亚群,第AI亚群相当于Lodder等人（1970）分类鉴定系统中的果蝇红酵母（Rhodotorulapilimanae),第AII亚群相当于Lodder系统中的深红酵母。本实验结果还表明,同工酶电泳方法简单易行,能精确地反映菌株之间的微小差异,适用于红酵母属的种级分类,也适用于种下分群,可以作为传统酵母菌分类的一个重要辅助手段,克服单纯依据形态特征和生理生化指标进行分类所存在的弊端。     

假丝酵母属疑难菌株大亚基rDNA D1/D2区域序列分析及其分类学意义*

对根据常规形态和生理生化性状难以确定分类学地位的8株假丝酵母菌,进行了以大亚基(26S) rDNA中D1/D2区域(约500~600 bp)的碱基序列分析为依据的分子分类学研究。根据系统树上所显示的供试菌株与假丝酵母属及相关子囊菌酵母已知种的亲缘关系,以及与最近缘种模式菌株D1/D2区域序列的相似性比较,确定了各个菌株的归属。本研究也显示了DNA序列分析在假丝酵母菌快速鉴定中的优越性。     

丙酮酸野生酵母菌的筛选及其生理生化特性研究

利用各种方法从来自苏锡地区的多种样品中广泛分离出200种野生酵母,然后借助纸上层析,获得13株具有纯丙酮酸生产能力的菌株.对其中2株的生理生化特性展开了进一步研究,初步认为其中1株性状类似南极洲假丝酵母(Candida antarctica),另1株属光滑球拟酵母(Torulopsis glabrata).     

假丝酵母属疑难菌株大亚基rDNA D1/D2区域序列分析及其分类学意义

对根据常规形态和生理生化性状难以确定分类学地位的8株假丝酵母菌,进行了以大亚基(26S) rDNA中D1/D2区域(约500～600 bp)的碱基序列分析为依据的分子分类学研究.根据系统树上所显示的供试菌株与假丝酵母属及相关子囊菌酵母已知种的亲缘关系,以及与最近缘种模式菌株D1/D2区域序列的相似性比较,确定了各个菌株的归属.本研究也显示了DNA序列分析在假丝酵母菌快速鉴定中的优越性.     

假丝酵母属疑难菌株大亚基rDNAD1／D2区域序列分析及其分类学意义

对根据常规形态和生理生化性状难以确定分类学地位的8株假丝酵母菌,进行了以大亚基（26S）rDNA中D1/D2区域（均500-600bp)的碱基序列分析为依据的分子分类学研究。根据系统树上所显示的供试菌株与假丝酵母属及相关子囊菌酵母已知种的亲缘关系,以及与最近缘种模式菌株D1/D2区域序列的相似性比较,确定了各个菌株的归属,本研究也显示了DNA序列分析在假丝酵母菌快速鉴定中的优越性。     

云南程海湖冬季酵母菌多样性及胞外酶活性研究

采用过滤涂皿的方法对云南程海湖冬季湖水样品中的酵母菌进行分离,通过26S r DNA D1/D2区域序列分析并结合形态观察和生理生化测试对分离获得的菌株进行鉴定,同时采用胞外酶定性筛选培养基进行产酶活性筛选,分析冬季程海湖酵母菌的多样性及胞外酶活性。结果从程海湖中分离获得171株酵母菌,鉴定为14个属22个种和2个潜在的新分类单元;优势属是红冬孢酵母属Rhodosporidium、红酵母属Rhodotorula和隐球酵母属Cryptococcus;优势种是红冬孢酵母Rhodosporidium kratochvilovae和斯鲁菲亚红酵母Rhodotorula slooffiae;湖北半部的样点CH2的多样性指数(H′=1.5945)和丰富度指数(R=2.7576)均最高,均匀度指数较高的是湖北部的样点CH1(J=0.8531);样点之间种群差异大,相似性低。大多数酵母菌株具有产1种以上的胞外酶。     

类胡萝卜素产生菌种的鉴定

于福建红酒酒糟中分离、筛选得到1株编号为B-5的产色素菌株。对该菌株所产色素进行定性分析,结果表明该色素为类胡萝卜素;对菌株进行常规形态和生理生化特性分析,结果表明该菌株为单细胞,呈卵圆形,芽殖;在固体培养基上,菌落呈深红色,菌落表面湿润、粘稠,边缘整齐,易被挑起;在液体培养基中,产生沉淀。无子囊孢子;无假菌丝形成。葡萄糖发酵试验为阴性,硝酸钾试验为阳性,耐高渗试验为阴性,产类淀粉化合物为阴性,37℃生长为阳性。利用26S rDNA D1/D2区域序列分析法对该菌株进行序列比对鉴定,结果表明,该酵母菌的序列与粘性红圆酵母（Rhodotorula mucilaginosa）模式菌株的序列同源性100%,结合该菌株常规形态和生理生化特性,鉴定该菌株为粘性红圆酵母（Rhodotorula mucilaginosa）。     

水质净化酵母菌的分离筛选及鉴定

摘要:【目的】针对目前水产养殖专用优良菌种资源缺乏的现状,从养殖环境和养殖生物体中分离筛选具有水质净化功能的酵母菌,并对优良菌株进行鉴定。【方法】在低温和常温条件下从皮皮虾、南美白对虾肠道及养殖池底质活性污泥中分离具有水质净化功能的酵母菌,在模拟水体中对分离菌株的水质净化能力进行筛选,并对优良菌株采用形态、生理生化实验及5.8S rDNA ITS序列分析进行鉴定。【结果】从3种介质中共分离到酵母菌37株,其中常温分离16株,低温分离21株。水质净化实验结果表明,常温分离的16株酵母菌中有5株,低温分离的21株酵母菌中有6株对模拟水体中亚硝态氮和氨氮有显著的去除效果;其中低温分离的DN9和常温分离的CN6 48h能将10.64mg/L的亚硝态氮彻底转化,96h对630mg/L CODcr的去除率分别达52%和67%。DN9和CN6均产红色色素,经形态特征、生理生化特性及5.8S rDNA基因序列分析,鉴定菌株CN6为沼泽生红冬胞酵母(Rhodosporidium paludigenum),DN9为胶红酵母(Rhodotorula mucilaginosa)。【结论】红酵母DN9和CN6能有效去除养殖水体中的有机污染物和亚硝态氮,有望开发成 水产养殖水质净化高效微生态制剂。     

5株生物合成GABA酵母菌株的分离、筛选和鉴定

从水果表皮、果园土、酒曲、泡菜等场所分离筛选到5株产生1-氨基丁酸（GABA）酵母菌菌株,其中4#酵母菌株的GABA产量最高,为3．653g／L。通过形态特征观察和生理生化特征测定,5株酵母菌株分别鉴定为3#属于酿酒酵母（Saccharomyces cerevisiae）,4#和LJ3属于葡萄汁酵母（Saccharomyces uvarum）,MQ属于红冬孢酵母（Rhodosporidium toruloides）,JQ属于红酵母（Rhodotorula glutinis）。     

1株高产多糖红曲霉菌株的分离鉴定及生物学特性研究

从市售红曲米和红腐乳中分离纯化得到56株红曲霉菌株,通过摇瓶发酵试验筛选出1株胞外多糖产量为4.73 g/L的红曲霉菌株M-6;依据形态特征、生理生化特征和ITS序列将菌株M-6鉴定为红色红曲霉（Monascus rubber）。并对其部分生物学特性进行了研究。     

深红酵母的化学数值分类学研究

对29株深红酵母(Rhodotorula rubra)的裂解气相色谱(PyGC)数据分别采用三种数值分析方法进行化学数值分类学研究。结果显示,不管是聚类分析、主分量分析还是Q型因 子分析,均能得到极为相似的分类结果,其中Q型因子分析效果最佳。通过数值分类学研究,29株深红酵母被划分成不同的四群,其中NKRlll不能与上述四群聚类,作者建议将该菌株从Rh. Rubra中分出,仍保留Rh. pilimanaE种名。     

全细胞长链脂肪酸在假丝酵母属分类中的应用初探

本文用气相色谱法测定了35株假丝酵母全细胞长链脂肪酸的组成和含量,并运用主分量分析法处理数据,对菌株进行分类。测定结果表明,这些菌株中共含有38种脂肪酸,其中软脂酸(C_(16:0))、棕榈油酸(C_(16:1))、硬脂酸(C_(18:0))、油酸(C_(18:1))、亚油酸(C_(18:2))和亚麻酸(C_(18:3发))等脂肪酸的含量较高,它们占总含量的90％以上。对脂肪酸的主分量分析将35株假丝酵母分为两个类群,分群结果与表观性状聚类分析的结果相似,根据脂肪酸对一些菌株亲缘关系的测定也有与表观性状分析类似的结果。酵母菌全细胞脂肪酸的分析为探索酵母菌系统分类关系提供了一可行的方法。     

Characterization of lipase activity in a yeast of the genus Rhodotorula (Rh. rubra)]

Lipase activity of whole cells of Rh. rubra has been localized in a particular fraction rich in walls and in isolated cell walls. The enzyme activity has been determinated with olive oil and the triglyceride fraction of olive oil as substrats. Gas chromatography of fatty acids and triglycerides isolated after enzyme hydrolysis shows that the action of Rh. rubra is not only limited to a simple hydrolysis of the substrate. The triglyceridase activity level is dependent of the phosphate content of the culture medium.     

Comparative study of the fatty acid composition of some groups of purple nonsulfur bacteria

The fatty acid composition (FAC) of 43 strains of purple nonsulfur bacteria belonging to six genera--Rubrivivax, Rhodopseudomonas, Rhodoplanes, Blastochloris, Rhodobium, and Rhodomicrobium--was studied by capillary gas chromatography. The cultures were grown on standard medium under standard conditions. Automatic identification of the fatty acid methyl esters and statistical processing of the results were performed by the computerized Microbial Identification System (M.I.S). Significant differences between the FACs of different genera, species, and, sometimes, strains were revealed. 16S rRNA genes of some of the new isolates, primarily those having a specific FAC, were sequenced. The taxonomic status of a number of the strains in question was determined using the FAC characteristics as one of the criteria. It was shown that the FAC characteristics may be used both for affiliating the isolates to known species and for revealing new taxa.     

Analysis of whole-cell fatty acid profiles of verotoxigenic Escherichia coli and Salmonella enteritidis with the microbial identification system.

Differentiation of strains within bacterial species, based on gas chromatographic analysis of whole-cell fatty acid profiles, was assessed with 115 strains of verotoxigenic Escherichia coli and 315 strains of Salmonella enteritidis. Fatty acid-based subgroups within each of the two species were generated. Variability of fatty acid profiles observed in repeat preparations from the same strain approached that observed between subgroups, limiting the usefulness of using fatty acid profiles to subgroup verotoxigenic E. coli and S. enteritidis strains.     

Identification of Rhizobium leguminosarum and Rhizobium sp. (Cicer) strains using a custom Fatty Acid Methyl Ester (FAME) profile library

The potential of using fatty acid methyl ester (FAME) profiles of Rhizobium leguminosarum bv. viceae , phaseoli and trifolii , and Rhizobium sp. ( Cicer ) strains, for the identification of unknown isolates was assessed. This was achieved by developing a Rhizobium FAME library using 16 different Rhizobium strains of Rh. leguminosarum bv. viceae ( n  ₌ 5), Rh. leguminosarum bv. phaseoli ( n  ₌ 5), Rh. leguminosarum bv. trifolii ( n  ₌ 1) and Rhizobium sp. ( Cicer ) ( n  ₌ 5). Although there were considerable differences between Rh. leguminosarum biovars and strains and Rhizobium sp. ( Cicer ) strains, the variation within a particular biovar of Rh. leguminosarum was not high. Nevertheless, the feature FAME profiles of the various groups in the library allowed 75 putative rhizobia obtained from surface-sterilized nodules of field-grown lentil and pea plants to be identified.     

两种水华藻——球形棕囊藻和铜绿微囊藻的脂肪酸组成特征与水华形成机制

浮游植物所含的不饱和脂肪酸是测定其作为食物质量的指标,并在浮游植物向浮游动物及其它动物能量转化过程中起着关键的作用,必需不饱和脂肪酸的缺乏有利于水华的形成。球形棕囊藻(Phaeocystis globosa)和铜绿微囊藻(Microcystis aeruginosa)分别是常见的海洋和淡水水华藻类,该文分析了它们在不同生长期的脂肪酸组成,探讨了这两种藻类的脂肪酸组成特征。球形棕囊藻和铜绿微囊藻的脂肪酸碳链长为14~20个碳原子,脂肪酸种类组成都比较简单,以饱和脂肪酸为主,未检测到二十碳五烯酸(Eicosapentaenoic acid,EPA)和二十二碳六烯酸 (Docosahexaenoic acid,DHA)等动物的必需脂肪酸。球形棕囊藻的总脂肪酸含量在247.294~735.44 μg·g^-1干重之间,在对数期和延滞期含量最高的脂肪酸分别是C14:0和C16:0;而两株铜绿微囊藻的总脂肪酸在1 405.095~6 087.617μg·g^-1干重之间,以C16:0含量最高。两株铜绿微囊藻的脂肪酸含量在对数期和延滞期差异明显(p<0.05),但球形棕囊藻的脂肪酸含量在不同生长期差别不大。由于缺乏必需脂肪酸EPA和DHA,球形棕囊藻和铜绿微囊藻不能为高营养级的生物提供必需的不饱和脂肪酸,不是浮游动物等生物的良好食物。因此球形棕囊藻和铜绿微囊藻作为浮游动物的食物质量较低,浮游动物对它们的捕食压力也较小,可能是这两种藻容易暴发水华的重要原因。     

Characterization of Bacillus strains of marine origin.

A total of twenty aerobic endospore-forming bacilli, isolated from marine invertebrates and sea water of different areas of the Pacific Ocean, were taxonomically characterized. Most of the bacilli (11 strains) of marine origin belonged to the species Bacillus subtilis, according to their phenotypic characteristics, antibiotic susceptibility profiles, and fatty acids patterns. A group of four alkaliphilic strains formed a separate cluster that was tentatively classified as B. horti. One isolate, KMM 1717, associated with a sponge from the Coral Sea was identified as B. pumilus. Two strains, Bacillus KMM 1916 and KMM 1918, showed antibiotic sensitivity profiles similar to B. licheniformis, but they had a distinct fatty acid composition and peculiar phenotypic traits. The taxonomic affiliation of KMM 1810 and KMM 1763 remained unclear since their fatty acid composition and antibiotic sensitivity patterns were not resembled with none of these obtained for Bacillus strains.     

Reclassification of Methylobacterium chloromethanicum and Methylobacterium dichloromethanicum as later subjective synonyms of Methylobacterium extorquens and of Methylobacterium lusitanum as a later subjective synonym of Methylobacterium rhodesianum

Phylogenetic analysis based on 16S rDNA sequences was performed on all type strains of the 14 validly described Methylobacterium species to ascertain the genealogic relationships among these species. The results showed that type strains of Methylobacterium were divided into two monophyletic groups whose members were distinct species with sequence similarity values greater than 97.0% between any two of the members in the same group. Only M. organophilum JCM 2833(T) and ATCC 27886(T) were not divided into those two groups. In particular, strains of M. dichloromethanicum and M. chloromethanicum exhibited extremely high similarity values (99.9 and 100%, respectively) with the type strain of M. extorquens. To clarify the relationships among Methylobacterium species in more detail, phylogenetic analysis based on the 5' end hyper-variable region of 16S rDNA (HV region), ribotyping analysis, fatty acid analysis, G+C content analysis and DNA-DNA hybridization experiments was performed on 58 strains of Methylobacterium species. Results of the ribotyping analysis and the phylogenetic analysis based on HV region sequences indicated that many Methylobacterium strains, including M. 'organophilum' DSM 760(T), have been erroneously identified. The DNA G+C content of Methylobacterium strains were between 68.1 and 71.3%. Results of whole-cell fatty-acid profiles showed that all strains contained 18 : 1omega7c as the primary fatty acid component (82.8-90.1%), with 16 : 0 and 18 : 0 as minor components. M. dichloromethanicum DSM 6343(T), M. chloromethanicum NCIMB 13688(T), and M. extorquens IAM 12631(T) exhibited high DNA-DNA relatedness values between each other (69-80%). M. lusitanum NCIMB 13779(T) also showed a close relationship with M. rhodesianum DSM 5687(T) at DNA-DNA relatedness levels of 89-92%. According to these results, many Methylobacterium strains should be reclassified, with M. dichloromethanicum and M. chloromethanicum regarded as a synonym of M. extorquens, and M. lusitanum a synonym for M. rhodesianum.