The complete chloroplast and mitochondrial genomes of the diatom Nitzschia palea (Bacillariophyceae) demonstrate high sequence similarity to the endosymbiont organelles of the dinotom Durinskia baltica

Nitzschia palea is a common freshwater diatom used as a bioindicator because of its tolerance of polluted waterways. There is also evidence it may be the tertiary endosymbiont within the “dinotom” dinoflagellate Durinskia baltica. A putative strain of N. palea was collected from a pond on the University of Virginia's College at Wise campus and cultured. For initial identification, three markers were sequenced—nuclear 18S rDNA, the chloroplast 23S rDNA, and rbcL. Morphological characteristics were determined using light and scanning electron microscopy; based on these observations the cells were identified as N. palea and named strain “Wise.” DNA from N. palea was deep sequenced and the chloroplast and mitochondrial genomes assembled. Single gene phylogenies grouped N. palea—Wise within a clearly defined N. palea clade and showed it was most closely related to the strain “SpainA3.” The chloroplast genome of N. palea is 119,447 bp with a quadripartite structure, 135 protein‐coding, 28 tRNA, and 3 rRNA genes. The mitochondrial genome is 37,754 bp with a single repeat region as found in other diatom chondriomes, 37 protein‐coding, 23 tRNA, and 2 rRNA genes. The chloroplast genomes of N. palea and D. baltica have identical gene content, synteny, and a 92.7% pair‐wise sequence similarity with most differences occurring in intergenic regions. The N. palea mitochondrial genome and D. baltica's endosymbiont mitochondrial genome also have identical gene content and order with a sequence similarity of 90.7%. Genome‐based phylogenies demonstrated that D. baltica is more similar to N. palea than any other diatom sequence currently available. These data provide the genome sequences of two organelles for a widespread diatom and show they are very similar to those of Durinskia baltica's endosymbiont.     

The effects of dissolved heavy metals on attached diatoms in the Uintah Basin of Utah,U.S.A.

The relationships of diatom species to dissolved heavy metals in the streams of the Uintah Basin of Utah were studied through four seasons of 1977–1978. Niche center gradient analysis, cluster analysis and correlation analysis were performed.Achnanthes minutissima, Cyclotella meneghiniana, Cymbella minuta, Gomphonema parvulum, Navicula secreta var.apiculata, Nitzschia frustulum, Nitzschia frustulum var.perminuta, Nitzschia frustulum var.perpusilla, Nitzschia palea, andSynedra ulna appear to be indicator species of high or low heavy metal concentrations. Several other species also showed meaningful relationships to high or low heavy metal concentrations.Dept. of Physics and Astronomy, Brigham Young UniversityDept. of Physics and Astronomy, Brigham Young University     

Impact of Urban Pollution from the Hanoi Area on Benthic Diatom Communities Collected from the Red, Nhue and Tolich Rivers (Vietnam)

The effects of urban pollution from Hanoi city on the benthic diatom communities of the Nhue–Tolich river system were studied during the 2003 dry season. Benthic diatoms were allowed to grow on glass slides suspended in the water flow for 4 weeks. To reveal the relationship between water quality and diatom communities, Canonical correspondence analysis (CCA) was used on data concerning relative abundances of diatom species and environmental variables. Two diatom indices, IPS and DAIpo, were applied to evaluate water quality in the three rivers. A total of 291 diatom taxa were found in the Red, Nhue and Tolich Rivers. These were mainly cosmopolitan taxa, with some tropical, subtropical and endemic taxa. The most abundant taxa at the Red site were Aulacoseira granulata, Achnanthidium minutissimum, Encyonema minutum, Navicula recens and other halophilous taxa such as Nitzschia kurzii, Seminavis strigosa, Entomoneis paludosa, Bacillaria paradoxa. Diatom assemblages at the Tolich site consisted mainly of Nitzschia umbonata, Nitzschia palea and Eolimna minima. Diatom density ranged from 660 to 30,000 cells/cm². Environmental variables and diatom assemblage composition at all sites were significantly correlated. Two diatom indices gave similar results and indicate the Tolich River with the lowest values as a highly polluted site.     

Species composition of phytobenthos in the littoral of Lake Xolotlán (Managua)

The species composition of the phytobenthos in the littoral of Lake Xolotlán (Managua) was determined. Sampling was carried out in November 1987 (end of the rainy season) and in July–August 1988 (rainy season). Sixty-eight taxa were identified;viz. 47 Bacillariophyceae, 13 Cyanophyta and 8 Chlorophyta. The presence of diatom species likeNavicula veneta, Nitzschia amphibia andNitzschia palea indicate eutrophic conditions, high ionic concentration, alkaline conditions and intense organic pollution.     

Harmonization is more important than experience—results of the first Nordic–Baltic diatom intercalibration exercise 2007 (stream monitoring)

The goal of this study was a harmonization of diatom identification and counting among diatomists from the Scandinavian and Baltic countries to improve the comparison of diatom studies in this geographical area. An analysis of the results of 25 diatomists following the European standard EN 14407 during an intercalibration exercise showed that a high similarity was achieved by harmonization and not because of a long experience with diatoms. Sources of error were wrong calibration scales, overlooking of small taxa, especially small Navicula s.l., misidentifications (Eunotia rhomboidea was mistaken for Eunotia incisa) and unclear separation between certain taxa in the identification literature. The latter was discussed during a workshop with focus on the Achnanthes minutissima group, the separation of Fragilaria capucina var. gracilis from F. capucina var. rumpens, and Nitzschia palea var. palea from N. palea var. debilis. The exercise showed also that the Swedish standard diatom method tested here worked fine with acceptable error for the indices IPS (Indice de Polluo-sensibilité Spécifique) and ACID (ACidity Index for Diatoms) when diatomists with a low similarity (Bray–Curtis <60%) with the auditor in at least one of the samples are excluded.     

Attached diatom communities from the lower Truckee River,summer and fall, 1986

The algal flora of the Truckee River below Reno, Washoe County, Nevada was examined during the summer and fall months of 1986. This reach of the lower Truckee River exhibited a substantial gradient in dissolved inorganic nitrogen associated with sources which included treated wastewater from the Reno metropolitan area. The algal communities were similar to those of other river systems of the Great Basin. Cyanophyta and Chlorophyta formed encrusting mats on the substrate, with the nitrogen fixer Calothrix atricha relatively abundant upstream from the nitrogen source. Diatoms were abundant within and upon this mat. A total of 139 diatom taxa and 11 taxa other than diatoms was identified from this flora. Several of the diatom taxa, including Achnanthes minutissima, Diatoma vulgare, Nitzschia dissipata, and Nitzschia palea, demonstrated distinct downriver patterns in relative abundance.     

The Influence of Cu on Photosynthesis and Growth in Diatoms

Cu in ionic form in a balanced medium affects the rate of photosynthesis and growth in the diatom Nitzschia palea in about the same way as in the green alga Chlorella pyrenoidosa. Remarkable differences are found, however. Small concentrations of Cu influence the rate of photosynthesis considerably more in the diatom than in the green alga whereas the opposite is the case concerning growth. The latter is most likely a consequence of excretion of organic matter by the diatom in presence of Cu whereas this does not take place in Chlorella. Some of the excreted organic matter may bind Cu and thus make the medium suitable for growth. Although pre-treatment with Cu in the dark has no influence on the subsequent rate of photosynthesis in the light, organic matter is excreted in the dark immediately after the addition of Cu. The influence of Cu on the rate of photosynthesis varies by a factor of about 30 according to the stage of growth in a synchronized culture.     

Assessment of Water Pollution using Diatom Community Structure and Species Distribution — A Case Study in a Tropical River Basin

A study on biological assessment of water pollution using diatom community structure and species distribution was carried out in the Linggi River Basin, Malaysia which was polluted by various urban, industrial and agricultural wastes. A total of 86 diatom taxa belonging to 21 genera were recorded from all eight sampling stations located in the basin, of which 70 species were found on artificial substrates; the remaining 16 species were recorded exclusively on natural substrates. The number of diatom species observed between the stations varied from 22-47 species. The dominant diatom species in decreasing order of abundance were Eunotia vanheurckii, Nitzschia palea, Achnanthes saxonica, Gomphonema parvulum and Achnanthes minutissima. The most common clean water species were Achnanthes minutissima, A. linearis and Synedra rumpens. The most tolerant species were Nitzschia palea followed by Gomphonema parvulum and Pinnularia braunii. Eunotia vanheurckii and Navicula cryptocephala occurred in high densities at both unpolluted and polluted stations and can be considered as the common facultative or indifferent species. Although a large number of species were recorded at the unpolluted stations, equivalent number of species were also found at the moderately polluted stations. However, the number of species was reduced at grossly polluted stations. Nevertheless, a marked variation in species association exists between the unpolluted and polluted stations, but not among the polluted stations to distinguish the type and degree of pollution.     

The Effect of Chromium on the Photosynthesis and Growth of Diatoms and Green Algae

The effect of hexavalent chromium ions on the photosynthesis and growth of the diatom Nitzschia palea and the green alga Chlorella pyrenoidosa has been studied and compared with the effect of Cu and Hg. The effect of chromium is very similar to that of Cu and Hg, but it is more than one hundred times less toxic for the algae than copper. The toxicity of chromium is not counteracted by adding Fe to the culture solution. The problems regarding cleaning glass-ware in dichromate-sulphuric acid are discussed and it is strongly recommended to use other cleaning agents.     

Fast Fourier infrared spectroscopy to characterize the biochemical composition in diatoms

Diatoms are photosynthetic unicellular microalgae and are nature’s hidden source of several biosynthetic metabolites with their use in biofuel, food and drug industries. They mainly contain various lipids, sterols, isoprenoids and toxins with their use in apoptotic, fertility controlling and cancer drugs. Chemical studies on diatoms are limited due to various limitations such as variation of nutrients, contaminants and change in seasonal factors in the environment. To overcome these limitations, we obtained axenic cultures of 12 fresh-water diatom strains on the 22nd day of inoculation having a dry weight of 1 mg each and performed their Fourier transform infrared (FTIR) study for the detection of functional groups responsible for their chemical moiety. The spectral mapping showed a varied level of polyunsaturated fatty acids, amides, amines, ketone bodies and esters for their applications in various pharmacological, food and biofuel industries in the exponential phase of their growth in f/2 media. The FTIR study of the 12 diatom strains showed various similarities in the form of some common peak patterns ranging from 3000 to 3600 cm^?1 for ν_O–H absorption. The symmetric stretching vibration frequency of Diadesmis confervaceae (V2) type species showed different behaviour than others in the spectral region starting from 1600 to 1700 cm^?1. The absorption between 1500 and 1575 cm^?1 reflects the presence of the –N–H group. Infrared (IR) absorptions falling between 1600 and 1700 cm^?1 reflect the presence of amide’s ν_C=O in all species. Placoneis elginensis (V8) type species showed an additional absorption band which is centred around 1735–1750 cm^?1 which perhaps reflects the presence of ester’s ν_C=O. Diadesmis confervaceae (V2), Nitzschia palea (V4), Placoneis elginensis (V8), Nitzschia palea var. debilis (V6), Nitzschia inconspicua (V10), Gomphonema parvulum (V11) and Sellaphora (V12) showed distinct structural features with important key functionalities that can make them essential drug markers in the pharmaceutical industry.     

PYRENOIDS,RAPHES, AND OTHER FINE STRUCTURE IN DIATOMS

Pyrenoids of 6 diatoms, Acnanthes minutissima, Cyclotella meneghiniania, Cymbella affinis, Gomphonema parvulum, Nitzschia sp., and Surirella ovalis, were examined comparatively with the electron microscope. All except those of G. parvulum were membrane-limited. The pyrenoid membrane forms a ridge around the pyrenoid of S. ovalis, C. meneghiniania, and Nitzschia sp. Distended double-disc bands cross the pyrenoids of C. affinis, G. parvulum, S. ovalis, and A. minutissima; single-disc bands occur in C. meneghiniania, and 3 disc bands in Nitzschia sp. The raphe fissures of A. minutissima, Nitzschia sp., and S. ovalis did not contain any cytoplasm or obvious organs of locomotion. In G. parvulum, membranous profiles extend outward from the raphe fissure, but these probably are not responsible for movement. In this diatom 2 membranes usually cross the raphe, and the distance between them fluctuates indicating that they may undulate to force water through the raphe. A 7–10 mμ subfrustular zone is associated with the inner surface of the silica, but separate from the cytoplasmic membrane, in Nitzschia sp. and G. parvulum. In the latter, it is attached to siliceous knobs protruding from the inner surface of the silica. It may join the 2 halves of the frustale, which are otherwise not connected either to each other or to the cytoplasm. Pores 80–100 mμ in diameter occur in the nuclear envelopes of all diatoms examined. Dictyosomes are always perinuclear. In S. ovalis the vesicular complex is a convoluted, single-membrane-limited structure containing a variety of vesicular profiles, and occupying much of the central cytoplasm. Internally it resembles leucosin bodies of a chrysophyte, but the arrangement and morphology of the internal vesicles suggests that intracellular pinocytosis may occur.     

Dynamics of diatom colonization process in some rivers influenced by urban pollution (Hanoi, Vietnam)

Periphytic diatom communities’ colonization patterns were studied at three sampling stations of the Red–Nhue–Tolich hydrosystem presenting different urban pollution levels by using artificial substrates for 6 weeks in dry season 2005. Structural characteristics of periphytic diatoms developed on glass substrates at each sampling site were followed and compared. This experiment showed, through various general criteria (total diatom density, dry weight biomass) and specific criteria (relative diatom abundances, indices) that the structure of benthic diatoms developed on these substrates was strongly affected by pollution as early as the second week of colonization. Communities exposed to heavily and moderately polluted sites contained species which are known to be saprophilous or tolerant to organic pollution such as Nitzschia umbonata, Nitzschia palea, Cyclotella meneghiniana, Eolimna minima. Growth inhibition of diatom communities at the heavily polluted site was mostly related to a strong increase of organic load rather than to low metallic input, though metallic (Cd and Zn) burdens have been successfully quantified in the biofilms developed at the three studied sites. Nevertheless, no significant difference in species richness and diversity index between colonization duration times was observed. Based on values of diatom indices Indice de Polluosensibilité (IPS) and diatom assemblage index to organic water pollution (DAIPo), water quality could be classified as medium quality at Red site, polluted at NT₂ and heavily polluted at TL. Thus, the use of diatoms as a tool for water assessment appears suitable for monitoring rivers in Vietnam, as it is in several other countries.     

NEW PYRENOID FORMATION IN THE BROWN ALGA,SCYTOSIPHON LOMENTARIA (SCYTOSIPHONALES,PHAEOPHYCEAE)1

The Scytosiphon lomentaria (Lyngbye) Link cell characteristically has only one chloroplast with a prominent protruding pyrenoid. We observed the appearance of a new pyrenoid in each chloroplast during first mitosis in zygotes of S. lomentaria, using the freeze substitution technique. At first, a pyrenoid matrix appeared within the outermost stroma, in which thylakoid triplets and ribosomes were absent. At this time, the surface of this part remained smooth. The old pyrenoid was covered with a pyrenoid cap on the cytoplasmic side, whereas there was no pyrenoid cap on the new pyrenoid before protrusion. Irregularly shaped membranous sacs containing fine granular materials associated with the cytoplasmic side of the new pyrenoid. The sacs fused with each other and changed conformation and finally transformed into the pyrenoid cap. The new pyrenoid gradually protruded toward the cytoplasm, and the new pyrenoid cap became curved along the surface of pyrenoid. Cytokinesis occurred, and each chloroplast had two prominent protruding pyrenoids in two‐celled zygotes. We examined immunolocalization of β‐1,3‐glucans within the pyrenoid cap with a monoclonal antibody, using EM. Gold particles indicating localization of β‐1,3‐glucans were detected in vacuoles but never in the pyrenoid cap. This observation suggests that the pyrenoid cap in brown algae contains no photosynthetic products such as polysaccharide.     

Long-term monitoring of the biomass and production of lipids by Nitzschia palea for biodiesel production

Pennate diatom Nitzschia palea can be cultured in outdoor vertical-bed photobioreactors to produce biodiesel. To assess the production of biomass and lipids, non-axenic cultures of Nitzschia palea were grown outdoors, and the growth of these cultures was measured biweekly. During the annual cycle of algal culture, the culture temperature ranged from 17.3 °C to 33.5 °C, the dry weight biomass ranged from 0.11 g l⁻¹ to 0.25 g l⁻¹, light energy] ranged from 1.94 Wm⁻² to 3.9 Wm⁻² and intracellular lipid content ranged from 7.1% to 11.4% of biomass weight after drying at 60 °C. Gas chromatography/mass spectroscopy (GC/MS) analysis of n-hexane extracts showed that the intracellular lipids were primarily C14:0 myristic acid (9.01%), C15:0 pentadecyclic acid (8.26%) and two types of C16:0, palmitic acid (41.13%) and palmitoleic acid (29.25%). Gel permeation analysis showed that carboxylic acids comprised 28.9% of lipids, 16.3% of monoglycerides, 27.3% of diglycerides and 24.3% of triglycerides. Alcoholysis of lipids resulted in the conversion of about 93.9% of fatty acids to equivalent fatty acid methyl esters (FAME) or biodiesel, which, on basis of wt%, consisted primarily of C15:0 methyl myristate (8.3%), C16:0 methyl pentadecanoate] (7.2%), C17:1methyl palmitoleate (28.7%) and methyl palimtate](39.8%).     

STRUCTURE-FUNCTION RELATIONSHIPS IN THE ADIPOSE CELL : I. Ultrastructure of the Isolated Adipose Cell

A method is described for preparing isolated rat adipose cells for electron microscopy. The ultrastructure of such cells and their production of ¹⁴CO₂ from U-glucose-¹⁴C were studied simultaneously in the presence of insulin or epinephrine. Each adipose cell consists of a large lipid droplet surrounded by a thin rim of cytoplasm. In addition to typical subcellular organelles, a variety of small lipid droplets and an extensive system of membranes characterize the cell's cytoplasm. A fenestrated envelope surrounds the large, central lipid droplet. Similar envelopes surround cytoplasmic lipid droplets occurring individually or as aggregates of very small, amorphous droplets. Groups of individual droplets of smaller size also occur without envelopes. The system of membranes consists of invaginations of the cell membrane, vesicles possibly of pinocytic origin, simple and vesiculated vacuoles, vesicles deeper in the cytoplasm, flattened and vesicular smooth surfaced endoplasmic reticulum, and Golgi complexes. Neither insulin nor epinephrine produced detectable ultrastructural alterations even when cells were incubated under optimal conditions for the stimulation of ¹⁴CO₂ evolution. Structural responses of the isolated adipose cell to hormones, if such occur, must, therefore, be dynamic rather than qualitative in nature; the extensive system of smooth surfaced membranes is suggestive of compartmentalized transport and metabolism.     

INTESTINAL TRIGLYCERIDE ABSORPTION IN THE RAT : An Electron Microscopical Study

This report provides information on the morphology of fat absorption in rat intestinal epithelial cells. Three types of experiments were performed: (a) intubation of corn oil into fasted rats, (b) injection of physiological fatty-chyme prepared from fat-fed donor rats into ligated segments of jejunum of fasted animals, and (c) administration of electron-opaque particles in corn oil and markers given concurrently with the fat. These results support the hypothesis that fat is absorbed by selective diffusion of monoglycerides and fatty acids from micelles rather than by pinocytosis of unhydrolized triglycerides. Evidence is presented that the pits between the microvilli, previously believed to function in the transport of fat, are not involved in this process. Instead they appear to contribute their contents to lysosomes in the apical cytoplasm. Arguments are offered that the monoglycerides and fatty acids diffuse from the micelle while the latter is associated with the microvillous membrane of the absorptive cell. These micellar components penetrate the plasma membrane and diffuse into the cytoplasmic matrix where they encounter the SER. Triglyceride synthesis occurs in the SER and results in the deposition of fat droplets within its lumina. The synthesis of triglycerides and their sequestration into the SER establishes an inward diffusion gradient of monoglycerides and fatty acids.     

OBSERVATIONS ON THE ULTRASTRUCTURE OF THE MALI GAMETES OF BIDDULPHIA LEVIS EHR.1

The marine centric diatom Biddulphia levis produced uniflagellate fusiform male gametes completely within the parent cell frustule. These gametes lacked both a central pair of microtubules in the flagellar axoneme and chloroplasts but did contain a cone of microtubules which passed posteriorly from the base of the kinetosome along the nuclear envelope. The gametes were released through a specialized pore in the girdle band leaving behind a cytoplasmic mass which contained chloroplasts and other cytoplasmic components. Tubules which resembled the flimmer hairs on the gamete flagellum occurred in cisternae of the cytoplasmic reticulum in the residual cytoplasm and in the nuclear envelope of the gametes. Gametogenesis in B. levis is compared with similar processes in other centric diatoms.     

STRUCTURE AND DEVELOPMENT OF THE CHLOROPLAST IN CHLAMYDOMONAS : I. THE NORMAL GREEN CELL

The cytoplasmic organization of a normal green strain of the alga Chlamydomonas reinhardi has been investigated with the electron microscope using thin sections of OsO₄ fixed material. The detailed organization of the chloroplast has been of special interest. The chloroplast, a cup-shaped organelle, surrounded by a double membrane, consists of: (1) discs about 1 micron in diameter, considered to represent the basic structural unit of the chloroplast, and each composed of a pair of membranes joined at their ends to form a flat closed vesicle; the discs are grouped into stacks resembling the grana of higher plants; (2) matrix material of low density in which the discs are embedded; (3) starch grains; (4) the pyrenoid, a non-lamellar region associated with starch synthesis, and containing tubules which connect with the lamellae; (5) the eyespot, a differentiated region containing two or three plates of hexagonally packed, carotenoid-containing granules, located between discs, and associated with phototaxis. In addition to the chloroplast, the cytoplasm contains various membranous and granular components, including mitochondria, endoplasmic reticulum, and dictyosomes, identified on the basis of morphological comparability with structures seen in animal cells. The nucleus, not investigated in detail in this study, contains a large, granular nucleolus and is surrounded by a nuclear envelope which is provided with pores and exhibits instances of continuity with the endoplasmic reticulum of the cytoplasm.     

A direct immunoassay for detecting diatoms in groundwater as an indicator of the direct influence of surface water

Groundwater under the direct influence of surface water (GWUDISW) is of concern in communities where growing public demand on groundwater resources has resulted in increased withdrawals and hydraulic stress near surface water bodies. Under these conditions, contaminants such as methyl-tert butyl ether (MTBE) and biological materials have been detected in domestic wells. Other contaminants and pathogens associated with surface water are not routinely tested for in groundwater-supplied systems. To address the need for methods to easily identify potentially vulnerable supplies, a direct immunoassay for the quantitative detection of diatoms in raw water samples was developed as a measure of surface water influence on groundwater. Cell wall preparations from Nitzschia palea Kützing, a freshwater diatom found throughout North America, were used to produce a polyclonal antibody that was applied in a direct enzyme-linked immunosorbent assay (ELISA) developed to detect the presence of N. palea cell wall components. The direct immunoassay allows detection at 500 cells L⁻¹, a level similar to diatom concentrations observed in samples of groundwater collected near the test site. This investigation was the first attempt to utilize an ELISA as an indicator of surface water influence on groundwater. Further research is needed to develop more specific diatom-based monoclonal antibodies, determine cross-reactivity, and optimize sample processing and ELISA procedures for development of a standardized method.     

Can Hydrodynamics Change Phosphorus Strategies of Diatoms?—Nutrient Levels and Diatom Blooms in Lotic and Lentic Ecosystems

Diatom blooms occur in many water bodies worldwide, causing significant ecological and social concerns. In order to understand the mechanisms of diatom blooms formation, the effects of varying phosphorus (P) concentration and hydrodynamics on the growth of diatoms were studied by combining results from field observations and laboratory experiments. The field investigation showed that spring diatom blooms (Cyclotella meneghiniana and Stephanodiscus hantzschii) occurred in Lake Taihu and Hanjiang River with similar environmental factors such as water temperature, pH, and dissolved oxygen in 2008. Concentrations of total phosphorus (TP), total nitrogen, and ammonia nitrogen (NH₄-N) in Lake Taihu were significantly higher than the concentrations in the Hanjiang River. Laboratory experiments were conducted to evaluate growth and physiological responses of four lotic diatoms (Cyclotella atomus, Fragilaria crotonensis, Nitzschia palea, and S. hantzschii, isolated from the Hanjiang River) and three lentic diatoms (C. meneghiniana, Melosira varians, and Stephanodiscus minutulus, isolated from Lake Taihu, Lake Donghu, and Guanqiao Pond, respectively) to various P concentrations under small-scale turbulent and standing conditions. Our results showed that, with turbulence, lotic diatoms C. atomus, F. crotonensis, N. palea, and S. hantzschii demonstrated a significant increase in affinity for P compared with lentic diatoms C. meneghiniana, M. varians, and S. minutulus. Moreover, lotic diatoms C. atomus, F. crotonensis, and N. palea had higher growth rates and photosynthetic efficiencies with small-scale turbulence than with standing conditions both in P-limited and P-replete conditions. Lotic species S. hantzschii and three lentic diatoms (C. meneghiniana, M. varians, and S. minutulus) grew well under standing conditions. Our results may explain our field observation that the occurrence of diatom blooms in lakes is often associated with higher TP concentrations whereas in rivers, diatom blooms occur at a wide range of TP concentrations under flows. Therefore, different hydrodynamics and nutrient concentrations determined the dominant diatom species, according to their habitat-dependent physiological characteristics.