Evaluation of Agricultural Production Systems Simulator as yield predictor of Panicum virgatum and Miscanthus x giganteus in several US environments

Simulation models for perennial energy crops such as switchgrass (Panicum virgatum L.) and Miscanthus (Miscanthus x giganteus) can be useful tools to design management strategies for biomass productivity improvement in US environments. The Agricultural Production Systems Simulator (APSIM) is a biophysical model with the potential to simulate the growth of perennial crops. APSIM crop modules do not exist for switchgrass and Miscanthus, however, re‐parameterization of existing APSIM modules could be used to simulate the growth of these perennials. Our aim was to evaluate the ability of APSIM to predict the dry matter (DM) yield of switchgrass and Miscanthus at several US locations. The Lucerne (for switchgrass) and Sugarcane (for Miscanthus) APSIM modules were calibrated using data from four locations in Indiana. A sensitivity analysis informed the relative impact of changes in plant and soil parameters of APSIM Lucerne and APSIM Sugarcane modules. An independent dataset of switchgrass and Miscanthus DM yields from several US environments was used to validate these re‐parameterized APSIM modules. The re‐parameterized modules simulated DM yields of switchgrass [0.95 for CCC (concordance correlation coefficient) and 0 for SB (bias of the simulation from the measurement)] and Miscanthus (0.65 and 0% for CCC and SB, respectively) accurately at most locations with the exception of switchgrass at southern US sites (0.01 for CCC and 2% for SB). Therefore, the APSIM model is a promising tool for simulating DM yields for switchgrass and Miscanthus while accounting for environmental variability. Given our study was strictly based on APSIM calibrations at Indiana locations, additional research using more extensive calibration data may enhance APSIM robustness.     

Could Miscanthus replace maize as the preferred substrate for anaerobic digestion in the United Kingdom? Future breeding strategies

Fodder maize is the most commonly used crop for biogas production owing to its high yields, high concentrations of starch and good digestibility. However, environmental concerns and possible future conflict with land for food production may limit its long‐term use. The bioenergy grass, Miscanthus, is a high‐yielding perennial that can grow on marginal land and, with ‘greener’ environmental credentials, may offer an alternative. To compete with maize, the concentration of non‐structural carbohydrates (NSC) and digestibility may need to be improved. Non‐structural carbohydrates were quantified in 38 diverse genotypes of Miscanthus in green‐cut biomass in July and October. The aim was to determine whether NSC abundance could be a target for breeding programmes or whether genotypes already exist that could rival maize for use in anaerobic digestion systems. The saccharification potential and measures of N P and K were also studied. The highest concentrations of NSC were in July, reaching a maximum of 20% DW. However, the maximum yield was in October with 300–400 g NSC plant^?1 owing to higher biomass. The digestibility of the cell wall was higher in July than in October, but the increase in biomass meant yields of digestible sugars were still higher in October. Nutrient concentrations were at least twofold higher in July compared to November, and the abundance of potassium showed the greatest degree of variation between genotypes. The projected maximum yield of NSC was 1.3 t ha^?1 with significant variation to target for breeding. Starch accumulated in the highest concentrations and continued to increase into autumn in some genotypes. Therefore, starch, rather than sugars, would be a better target for breeding improvement. If harvest date was brought forward to autumn, nutrient losses in non‐flowering genotypes would be comparable to an early spring harvest.     

Allelopathic and intraspecific growth competition effects establishment of direct sown Miscanthus

High yielding perennial crops are being developed as a sustainable feedstock for renewable energy and bioproducts. Miscanthus is a leading biomass crop, but most plantations comprise a sterile hybrid Miscanthus × giganteus that is clonally propagated. To develop new varieties across large areas, rhizome cloning is inefficient, time consuming and expensive. Alternative approaches use seed, and in temperate regions, this has been successfully applied by raising seedlings as plug plants in glasshouses before transfer to the field. Direct sowing has yet to be proven commercially viable because poor germination has resulted in inconsistent stand establishment. Oversowing using seed clusters is a common approach to improve the establishment of crops and it was hypothesized that such an approach will improve uniformity of density in early Miscanthus stands and thereby improve yield. Sowing multiple seeds creates potential for new interactions, and we identified at least two inhibitory mechanisms related to seed numbers. Germinating seed produced allelopathic effects on nearby seed thereby inhibiting plant growth. The inhibitory effect of Miscanthus seed on germination percentages was related to seed number within clusters. An extract from germinating Miscanthus seed inhibited the germination of Miscanthus seed. The extract was analysed by HPLC, which identified a complex mixture including several known allelopathic compounds including proanthocyanidins and vanillic acid. There was also evidence of root competition in soil in a controlled environment experiment. When the experiment on competition was replicated at field scale, the establishment rates were much lower and there was evidence of shoot competition. We conclude that the numbers of seed required to ensure an acceptable level of establishment in the field may be economically impractical until other agronomic techniques are included either to reduce the inhibitory effects of higher seed numbers or to reduce oversowing rates.     

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

To breed improved biomass cultivars of Miscanthus ×giganteus, it will be necessary to select the highest‐yielding and best‐adapted genotypes of its parental species, Miscanthus sinensis and Miscanthus sacchariflorus. We phenotyped a diverse clonally propagated panel of 569 M. sinensis and nine natural diploid M. ×giganteus at one subtropical (Zhuji, China) and five temperate locations (Sapporo, Japan; Leamington, Ontario, Canada; Fort Collins, CO; Urbana, IL; and Chuncheon, Korea) for dry biomass yield and 14 yield‐component traits, in trials grown for 3 years. Notably, dry biomass yield of four Miscanthus accessions exceeded 80 Mg/ha in Zhuji, China, approaching the highest observed for any land plant. Additionally, six M. sinensis in Sapporo, Japan and one in Leamington, Canada also yielded more than the triploid M. ×giganteus ‘1993‐1780’ control, with values exceeding 20 Mg/ha. Diploid M. ×giganteus was the best‐yielding group at the northern sites. Genotype‐by‐environment interactions were modest among the five northern trial sites but large between Zhuji, and the northern sites. M. sinensis accessions typically yielded best at trial sites with latitudes similar to collection sites, although broad adaptation was observed for accessions from southern Japan. Genotypic heritabilities for third year yields ranged from 0.71 to 0.88 within locations. Compressed circumference was the best predictor of yield. These results establish a baseline of data for initiating selection to improve biomass yield of M. sinensis and M. ×giganteus in a diverse set of relevant geographies.     

Reducing Competitive Suppression of a Rare Annual Forb by Restoring Native California Perennial Grasslands

Populations of the rare annual forb Amsinckia grandiflora may be declining because of competitive suppression by exotic annual grasses, and may perform better in a matrix of native perennial bunchgrasses. We conducted a field competition experiment in which Amsinckia seedlings were transplanted into forty 0.64‐m² experimental plots of exotic annual grassland or restored perennial grassland. The perennial grassland plots were restored using mature 3 cm‐diameter plants of the native perennial bunchgrass Poa secunda planted in three densities. The exotic annual grassland plots were established in four densities through manual removal of existing plants. Both grass types reduced soil water potential with increasing biomass, but this reduction was not significantly different between grass types. Both grass types significantly reduced the production of Amsinckia inflorescences. At low and intermediate densities (dry biomass per unit area of 20–80 g/m²), the exotic annual grasses reduced Amsinckia inflorescence number to a greater extent than did Poa, although at high densities (>90 g/m²) both grass types reduced the number of Amsinckia inflorescences to the same extent. The response of Amsinckia inflorescence number to Poa biomass was linear, whereas the same response to the annual grass biomass is logarithmic, and appeared to be related to graminoid cover. This may be because of the different growth forms exhibited by the two grass types. Results of this research suggest that restored native perennial grasslands at intermediate densities have a high habitat value for the potential establishment of the native annual A. grandiflora.     

Changes in isotopic signatures of soil carbon and CO2 respiration immediately and one year after Miscanthus removal

The removal of perennial bioenergy crops, such as Miscanthus, has rarely been studied although it is an important form of land use change. Miscanthus is a C4 plant, and the carbon (C) it deposits during its growth has a different isotopic signature (¹²/¹³C) compared to a C3 plant. Identifying the proportion of C stored and released to the atmosphere is important information for ecosystem models and life cycle analyses. During a removal experiment in June 2011 of a 20‐year old Miscanthus field (Grignon, France), vegetation was removed mechanically and chemically. Two replicate plots were converted into a rotation of annual crops, two plots had Miscanthus removed with no soil disturbance, followed by bare soil (set‐aside), one control plot was left with continued Miscanthus cultivation, and an adjacent field was used as annual arable crops control. There was a significant difference in the isotopic composition of the total soil C under Miscanthus compared with adjacent annual arable crops in all three measured soil layers (0–5, 5–10 and 10–20 cm). Before Miscanthus removal, total C in the soil under Miscanthus ranged from 4.9% in the top layer to 3.9% in the lower layers with δ¹³C values of ?16.3 to ?17.8 while soil C under the adjacent arable crop was significantly lower and ranged from 1.6 to 2% with δ¹³C values of ?23.2. This did not change much in 2012, suggesting the accumulation of soil C under Miscanthus persists for at least the first year. In contrast, the isotopic signals of soil respiration 1 year after Miscanthus removal from recultivated and set‐aside plots were similar to that of the annual arable control, while just after removal the signals were similar to that of the Miscanthus control. This suggests a rapid change in the form of soil C pools that are respired.     

Land use change from C3 grassland to C4 Miscanthus: effects on soil carbon content and estimated mitigation benefit after six years

To date, most Miscanthus trials and commercial fields have been planted on arable land. Energy crops will need to be grown more on lower grade lands unsuitable for arable crops. Grasslands represent a major land resource for energy crops. In grasslands, where soil organic carbon (SOC) levels can be high, there have been concerns that the carbon mitigation benefits of bioenergy from Miscanthus could be offset by losses in SOC associated with land use change. At a site in Wales (UK), we quantified the relatively short‐term impacts (6 years) of four novel Miscanthus hybrids and Miscanthus × giganteus on SOC in improved grassland. After 6 years, using stable carbon isotope ratios (¹³C/¹²C), the amount of Miscanthus derived C (C4) in total SOC was considerable (ca. 12%) and positively correlated to belowground biomass of different hybrids. Nevertheless, significant changes in SOC stocks (0–30 cm) were not detected as C4 Miscanthus carbon replaced the initial C3 grassland carbon; however, initial SOC decreased more in the presence of higher belowground biomass. We ascribed this apparently contradictory result to the rhizosphere priming effect triggered by easily available C sources. Observed changes in SOC partitioning were modelled using the RothC soil carbon turnover model and projected for 20 years showing that there is no significant change in SOC throughout the anticipated life of a Miscanthus crop. We interpret our observations to mean that the new labile C from Miscanthus has replaced the labile C from the grassland and, therefore, planting Miscanthus causes an insignificant change in soil organic carbon. The overall C mitigation benefit is therefore not decreased by depletion of soil C and is due to substitution of fossil fuel by the aboveground biomass, in this instance 73–108 Mg C ha^?1 for the lowest and highest yielding hybrids, respectively, after 6 years.     

Predicting future biomass yield in Miscanthus using the carbohydrate metabolic profile as a biomarker

In perennial energy crop breeding programmes, it can take several years before a mature yield is reached when potential new varieties can be scored. Modern plant breeding technologies have focussed on molecular markers, but for many crop species, this technology is unavailable. Therefore, prematurity predictors of harvestable yield would accelerate the release of new varieties. Metabolic biomarkers are routinely used in medicine, but they have been largely overlooked as predictive tools in plant science. We aimed to identify biomarkers of productivity in the bioenergy crop, Miscanthus, that could be used prognostically to predict future yields. This study identified a metabolic profile reflecting productivity in Miscanthus by correlating the summer carbohydrate composition of multiple genotypes with final yield 6 months later. Consistent and strong, significant correlations were observed between carbohydrate metrics and biomass traits at two separate field sites over 2 years. Machine‐learning feature selection was used to optimize carbohydrate metrics for support vector regression models, which were able to predict interyear biomass traits with a correlation (R) of >0.67 between predicted and actual values. To identify a causal basis for the relationships between the glycome profile and biomass, a ¹³C‐labelling experiment compared carbohydrate partitioning between high‐ and low‐yielding genotypes. A lower yielding and slower growing genotype partitioned a greater percentage of the ¹³C pulse into starch compared to a faster growing genotype where a greater percentage was located in the structural biomass. These results supported a link between plant performance and carbon flow through two rival pathways (starch vs. sucrose), with higher yielding plants exhibiting greater partitioning into structural biomass, via sucrose metabolism, rather than starch. Our results demonstrate that the plant metabolome can be used prognostically to anticipate future yields and this is a method that could be used to accelerate selection in perennial energy crop breeding programmes.     

Comparative Growth,Biomass Production and Fuel Properties Among Different Perennial Plants,Bamboo and <Emphasis Type="Italic">Miscanthus</Emphasis>

Bamboo and Miscanthus species are perennial low-input plants that are excellent candidates for bioenergy feedstock production. Biological characteristics, dry matter yields and fuel properties of the bamboo and Miscanthus have been studied. Genotype growth characteristics were determined by measurements of plant height, tillering, tuft diameter, and shoot diameter. To date, comparisons of biomass yields of bamboo and Miscanthus have not been previously reported in the literature. Bamboo and Miscanthus species were collected and previous articles describing the productivity of bamboo and Miscanthus were examined. Genotypes differed in plant height, tillering, tuft diameter, and shoot diameter. Nitrogen, temperature, water and plant density have effects on mature stands biomass production, which ranged from 5.9 to 49.5 tonnes/ha/yr for bamboo and 3.2 to 49.0 tonnes/ha/yr for Miscanthus. With such biomass yields, bamboo and Miscanthus should be considered as two very promising plants for biomass production in Zhejiang, China in the near future.     

Economic and greenhouse gas costs of Miscanthus supply chains in the United Kingdom

Miscanthus has been identified as one of the most promising perennial grasses for renewable energy generation in Europe and the United States [Mitigation and Adaptation Strategies for Global Change 9 (2004) 433]. However, the decision to use Miscanthus depends to a considerable degree on its economic and environmental performance [Soil Use and Management 24 (2008) 235; Renewable and Sustainable Energy Reviews 13 (2009) 1230]. This article assessed the spatial distribution of the economic and greenhouse gas (GHG) costs of producing and supplying Miscanthus in the UK. The average farm‐gate production cost of Miscanthus in the UK is estimated to be 40 £ per oven‐dried tonne (£ odt^?1), and the average GHG emissions from the production of Miscanthus are 1.72 kg carbon equivalent per oven‐dried tonnes per year (kg CE odt^?1 yr^?1). The production cost of Miscanthus varies from 35 to 55 £ odt^?1 with the lowest production costs in England, Wales and Northern Ireland, and the highest costs in Scotland. Sensitivity analysis shows that yield of Miscanthus is the most influential factor in its production cost, with precipitation the most crucial input in determining yield. GHG emissions from the production of Miscanthus range from 1.24 to 2.11 kg CE odt^?1 yr^?1. To maximize the GHG benefit, Miscanthus should be established preferentially on croplands, though other considerations obviously arise concerning suitability and value of the land for food production.     

Genome‐wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America

To improve the efficiency of breeding of Miscanthus for biomass yield, there is a need to develop genomics‐assisted selection for this long‐lived perennial crop by relating genotype to phenotype and breeding value across a broad range of environments. We present the first genome‐wide association (GWA) and genomic prediction study of Miscanthus that utilizes multilocation phenotypic data. A panel of 568 Miscanthus sinensis accessions was genotyped with 46,177 single nucleotide polymorphisms (SNPs) and evaluated at one subtropical and five temperate locations over 3 years for biomass yield and 14 yield‐component traits. GWA and genomic prediction were performed separately for different years of data in order to assess reproducibility. The analyses were also performed for individual field trial locations, as well as combined phenotypic data across groups of locations. GWA analyses identified 27 significant SNPs for yield, and a total of 504 associations across 298 unique SNPs across all traits, sites, and years. For yield, the greatest number of significant SNPs was identified by combining phenotypic data across all six locations. For some of the other yield‐component traits, greater numbers of significant SNPs were obtained from single site data, although the number of significant SNPs varied greatly from site to site. Candidate genes were identified. Accounting for population structure, genomic prediction accuracies for biomass yield ranged from 0.31 to 0.35 across five northern sites and from 0.13 to 0.18 for the subtropical location, depending on the estimation method. Genomic prediction accuracies of all traits were similar for single‐location and multilocation data, suggesting that genomic selection will be useful for breeding broadly adapted M. sinensis as well as M. sinensis optimized for specific climates. All of our data, including DNA sequences flanking each SNP, are publicly available. By facilitating genomic selection in M. sinensis and Miscanthus × giganteus, our results will accelerate the breeding of these species for biomass in diverse environments.     

Hydrological responses of land use change from cotton (Gossypium hirsutum L.) to cellulosic bioenergy crops in the Southern High Plains of Texas,USA

The Southern High Plains (SHP) region of Texas in the United States, where cotton is grown in a vast acreage, has the potential to grow cellulosic bioenergy crops such as perennial grasses and biomass sorghum (Sorghum bicolor). Evaluation of hydrological responses and biofuel production potential of hypothetical land use change from cotton (Gossypium hirsutum L.) to cellulosic bioenergy crops enables better understanding of the associated key agroecosystem processes and provides for the feasibility assessment of the targeted land use change in the SHP. The Soil and Water Assessment Tool (SWAT) was used to assess the impacts of replacing cotton with perennial Alamo switchgrass (Panicum virgatum L.), Miscanthus × giganteus (Miscanthus sinensis Anderss. [Poaceae]), big bluestem (Andropogon gerardii) and annual biomass sorghum on water balances, water use efficiency and biofuel production potential in the Double Mountain Fork Brazos watershed. Under perennial grass scenarios, the average (1994–2009) annual surface runoff from the entire watershed decreased by 6–8% relative to the baseline cotton scenario. In contrast, surface runoff increased by about 5% under the biomass sorghum scenario. Perennial grass land use change scenarios suggested an increase in average annual percolation within a range of 3–22% and maintenance of a higher soil water content during August to April compared to the baseline cotton scenario. About 19.1, 11.1, 3.2 and 8.8 Mg ha^?1 of biomass could potentially be produced if cotton area in the watershed would hypothetically be replaced by Miscanthus, switchgrass, big bluestem and biomass sorghum, respectively. Finally, Miscanthus and switchgrass were found to be ideal bioenergy crops for the dryland and irrigated systems, respectively, in the study watershed due to their higher water use efficiency, better water conservation effects, greater biomass and biofuel production potential, and minimum crop management requirements.     

Environmental costs and benefits of growing Miscanthus for bioenergy in the UK

Planting the perennial biomass crop Miscanthus in the UK could offset 2–13 Mt oil eq. yr^?1, contributing up to 10% of current energy use. Policymakers need assurance that upscaling Miscanthus production can be performed sustainably without negatively impacting essential food production or the wider environment. This study reviews a large body of Miscanthus relevant literature into concise summary statements. Perennial Miscanthus has energy output/input ratios 10 times higher (47.3 ± 2.2) than annual crops used for energy (4.7 ± 0.2 to 5.5 ± 0.2), and the total carbon cost of energy production (1.12 g CO₂‐C eq. MJ^?1) is 20–30 times lower than fossil fuels. Planting on former arable land generally increases soil organic carbon (SOC) with Miscanthus sequestering 0.7–2.2 Mg C4‐C ha^?1 yr^?1. Cultivation on grassland can cause a disturbance loss of SOC which is likely to be recovered during the lifetime of the crop and is potentially mitigated by fossil fuel offset. N₂O emissions can be five times lower under unfertilized Miscanthus than annual crops and up to 100 times lower than intensive pasture. Nitrogen fertilizer is generally unnecessary except in low fertility soils. Herbicide is essential during the establishment years after which natural weed suppression by shading is sufficient. Pesticides are unnecessary. Water‐use efficiency is high (e.g. 5.5–9.2 g aerial DM (kg H₂O)^?1, but high biomass productivity means increased water demand compared to cereal crops. The perennial nature and belowground biomass improves soil structure, increases water‐holding capacity (up by 100–150 mm), and reduces run‐off and erosion. Overwinter ripening increases landscape structural resources for wildlife. Reduced management intensity promotes earthworm diversity and abundance although poor litter palatability may reduce individual biomass. Chemical leaching into field boundaries is lower than comparable agriculture, improving soil and water habitat quality.     

First Report of Pseudomonas lurida Causing Bacterial Leaf Spot on Miscanthus sinensis

Miscanthus spp. are large perennial wetland grasses that are receiving considerable attention as bioenergy crops. In late summer 2011, leaf spot symptoms were observed in a field of Miscanthus sinensis in Jeongseon, Gangwon province, Korea. Bacterial strains that belonged to the γ‐Proteobacteria genus Pseudomonas were isolated from the affected leaves. By phylogenetic analysis and phenotypic characterization, the representative strain MDM‐03 was identified as Pseudomonas lurida. Healthy M. sinensis leaves inoculated with MDM‐03 developed leaf spots similar to those observed in field. Bacteria re‐isolated from the leaf lesions were identical to the original strain MDM‐03 based on their cultural characteristics and 16S rDNA sequencing. This is the first report of bacterial leaf spot in Miscanthus sinensis.     

Chloroplast DNA markers (cpSSRs,SNPs) for <Emphasis Type="Italic">Miscanthus,Saccharum</Emphasis> and related grasses (Panicoideae,Poaceae)

Miscanthus and Saccharum are closely related perennial C₄ grasses. Miscanthus has recently attracted interest as a non-food crop for energy and fibre production. However, molecular genetic tools for the selection of new Miscanthus genotypes and study of its genetic resources are limited. We have identified six chloroplast (plastid) marker loci,containing both microsatellites (cpSSRs) and single nucleotide polymorphisms (SNPs) and developed primers to amplify and sequence these regions. The primers were designed using the complete chloroplast genome sequence of sugarcane and were tested on a collection of 164 Miscanthus genotypes and 14 related species of the subfamily Panicoideae. The cpSSR markers were highly polymorphic, with the number of alleles ranging from 10 to 16 per locus. Within the six cpSSR marker loci, the hybrid M. ×giganteus exhibits virtually no cpDNA variation compared with its putative parents M. sinensis and M. sacchariflorus. These SNP markers enable the differentiation of most Miscanthus species and detect infraspecific variation suitable for defining cytoplasmic genepools of Miscanthus for breeding purposes.     

Comparative assessment of ecosystem C exchange in Miscanthus and reed canary grass during early establishment

Land‐use change to bioenergy crop production can contribute towards addressing the dual challenges of greenhouse gas mitigation and energy security. Realisation of the mitigation potential of bioenergy crops is, however, dependent on suitable crop selection and full assessment of the carbon (C) emissions associated with land conversion. Using eddy covariance‐based estimates, ecosystem C exchange was studied during the early‐establishment phase of two perennial crops, C₃ reed canary grass (RCG) and C₄ Miscanthus, planted on former grassland in Ireland. Crop development was the main determinant of net carbon exchange in the Miscanthus crop, restricting significant net C uptake during the first 2 years of establishment. The Miscanthus ecosystem switched from being a net C source in the conversion year to a strong net C sink (?411 ± 63 g C m^?2) in the third year, driven by significant above‐ground growth and leaf expansion. For RCG, early establishment and rapid canopy development facilitated a net C sink in the first 2 years of growth (?319 ± 57 (post‐planting) and ?397 ± 114 g C m^?2, respectively). Peak seasonal C uptake occurred three months earlier in RCG (May) than Miscanthus (August), however Miscanthus sustained net C uptake longer into the autumn and was close to C‐neutral in winter. Leaf longevity is therefore a key advantage of C₄ Miscanthus in temperate climates. Further increases in productivity are projected as Miscanthus reaches maturity and are likely to further enhance the C sink potential of Miscanthus relative to RCG.     

Winter hardiness of Miscanthus (I): Overwintering ability and yield of new Miscanthus ×giganteus genotypes in Illinois and Arkansas

Miscanthus ×giganteus (M×g) is an important bioenergy feedstock crop. However, biomass production of Miscanthus has been largely limited to one sterile triploid cultivar, M×g ‘1993‐1780’, which we demonstrate can have insufficient overwintering ability in temperate regions with cold winters. Key objectives for Miscanthus breeding include greater biomass yield and better adaptation to different production environments than M×g ‘1993‐1780’. In this study, we evaluated 13 M×g genotypes, including ‘1993‐1780’, in replicated field trials conducted for three years at Urbana, IL; Dixon Springs, IL; and Jonesboro, AR. Entries were phenotyped for first‐winter overwintering ability and plant hardiness (ratio of new tillers to old), yield in years 2 and 3, and first heading date, plant height, and culm number in years 1 and 2. We observed substantial variation for overwintering ability and biomass yield among the M×g genotypes tested and identified ones with better overwintering ability and/or higher biomass yield than ‘1993‐1780’. Most entries at Urbana were damaged during the first winter, whereas few or no entries were damaged at Dixon Springs or Jonesboro. However, M×g ‘Nagara’ was entirely undamaged during the first winter and produced high biomass yields at Urbana (19.7 Mg/ha in year 2 and 20.9 Mg/ha in year 3), whereas M×g ‘1993‐1780’ exhibited an overwintering loss of 29%, had severely damaged survivors (hardiness score of 25%), and reduced biomass yield (8.1 Mg/ha in year 2 and 16.2 Mg/ha in year 3), indicating that M×g ‘Nagara’ could be a better choice in hardiness zone 5 (average annual minimum air temperature of ?23.3 to ?28.9°C) or lower. In Dixon Springs, where M×g ‘1993‐1780’ was undamaged by the first winter, it yielded highest among all the entries (21.6 Mg/ha in year 3), though not significantly higher than M×g ‘Nagara’ (18.2 Mg/ha in year 3).     

Genetic diversity of Miscanthus sinensis in US naturalized populations

Miscanthus is increasingly gaining popularity as a bioenergy grass because of its extremely high biomass productivity. Many clones of this grass were introduced into United States over the past century from East Asia where it originated, and planted for ornamental and landscaping purposes. An understanding of the genetic diversity among these naturalized populations may help in the efficient selection of potential parents in the Miscanthus breeding program. Here, we report our study analyzing the genetic diversity of 228 MiscanthusDNA samples selected from seven sites in six states (Ohio, North Carolina, Washington D.C., Kentucky, Pennsylvania, and Virginia) across the eastern United States. Ten transferable DNA markers from other plant species were employed to amplify genomic DNA of Miscanthus because of the paucity of molecular markers in Miscanthus. There were significant genetic variations observed within and among US naturalized populations. The highest genetic diversity (0.3738) was found among the North Carolina genotypes taken from Biltmore Deer Park and Biltmore, Madison County, Cody Rd. The lowest genetic diversity (0.2776) was observed among Virginia genotypes that were diverged from those from other states, suggesting Virginia genotypes might be independently introduced into the United States from the different origin. By the cluster and structure analysis, 228 genotypes were categorized into two major groups that were further divided into six subgroups at the DNA level and the groups were generally consistent with geographic region.     

The response of native species to removal of invasive exotic grasses in a seasonally dry Hawaiian woodland

Abstract. Non-native perennial grasses form 30% of the live understory biomass in seasonally dry, submontane forests in Hawaii Volcanoes National Park, yet their effects on native species are unknown. We removed these grasses from plots of 20 m × 20 m in 1991 and maintained removal and control areas over the next three years. Two fast growing shrub species, Dodonaea viscosa and Osteomeles anthylidifolia, increased in size significantly more in removal areas than in controls. Individuals of the most abundant shrub species, Styphelia tameiameia showed no net growth response to grass removal. They did, however, change their architecture: many branches along the mid and upper sections of the main trunk died and a proliferation of new leaves and shoots occurred in the lower 40 cm of trunk. Basal diameter increase was very small in Metrosideros polymorpha, the dominant tree species in these sites. All species except Styphelia had significantly increased leaf tissue nitrogen in removal plots by 18 months after removal when compared to shrubs in control areas suggesting that removal plot shrubs had greater access to soil nitrogen. Available soil-N pools, which were generally higher in the removal plots, support this interpretation. Light levels near the soil surface were also higher where grasses were removed than where they were present which may have contributed to increased shrub growth. By contrast, soil moisture was consistently lower where grasses were removed than where they were still present. Shrub tissue carbon isotope values were consistent with the interpretation that shrubs in removal plots had less rather than more water available to them. Hence, the increased growth observed in removal plot shrubs could not be due to release from moisture competition. Lastly, our results showed that seedlings of all woody species except Metrosideros were significantly more abundant in removal plots at both one and three years after removal and initially high sapling mortality was balanced by high recruitment into the sapling class. We believe that over time this will result in increased densities of native shrubs if grasses are kept out. With the presence of grasses, shrub growth in these woodlands is reduced and biomass is shifting towards grasses.     

Genomic and small RNA sequencing of Miscanthus × giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses

Background

Miscanthus × giganteus (Mxg) is a perennial grass that produces superior biomass yields in temperate environments. The essentially uncharacterized triploid genome (3n = 57, x = 19) of Mxg is likely critical for the rapid growth of this vegetatively propagated interspecific hybrid.

Results

A survey of the complex Mxg genome was conducted using 454 pyrosequencing of genomic DNA and Illumina sequencing-by-synthesis of small RNA. We found that the coding fraction of the Mxg genome has a high level of sequence identity to that of other grasses. Highly repetitive sequences representing the great majority of the Mxg genome were predicted using non-cognate assembly for de novo repeat detection. Twelve abundant families of repeat were observed, with those related to either transposons or centromeric repeats likely to comprise over 95% of the genome. Comparisons of abundant repeat sequences to a small RNA survey of three Mxg organs (leaf, rhizome, inflorescence) revealed that the majority of observed 24-nucleotide small RNAs are derived from these repetitive sequences. We show that high-copy-number repeats match more of the small RNA, even when the amount of the repeat sequence in the genome is accounted for.

Conclusions

We show that major repeats are present within the triploid Mxg genome and are actively producing small RNAs. We also confirm the hypothesized origins of Mxg, and suggest that while the repeat content of Mxg differs from sorghum, the sorghum genome is likely to be of utility in the assembly of a gene-space sequence of Mxg.