Estimating mountain goat abundance using DNA from fecal pellets

Non-invasive collection of tissue samples to obtain DNA for microsatellite genotyping required to estimate population size has been used for many wildlife species but rarely for ungulates. We estimated mountain goat (Oreamnos americanus) population size on a mountain complex in southwestern British Columbia by identification of individuals using DNA obtained from fecal pellet and hair samples collected during 3 sampling sessions. We identified 55 individuals from 170 samples that were successfully genotyped, and estimated a population of 77 mountain goats (SE = 7.4). Mean capture probability was 0.38 (SE = 0.037) per session. Our technique provides one of the first statistically rigorous estimates of abundance of an ungulate species using DNA derived primarily from fecal pellets. Our technique enables managers to obtain minimum counts or population estimates of ungulates in areas of low sightability that can be used for conservation and management. © 2011 The Wildlife Society.     

The in situ sinking rates of herbivore fecal pellets

The vertical flux of pigmented fecal pellets was measured forperiods of 4 h or less with closely spaced sediment traps. Thesettling of the nighttime injection resulting from macrozooplanktongrazing activity could be monitored as the pellets settled throughthe water column. Sinking rates of fecal pellets showed a rangeof 31 – 122 m d^–1 with an average of 87 m d^–1.Longer term experiments show that the vertical phaeopigmentflux is conservative, and that there is no significant lossof pigments en route to the sea floor. In Dabob Bay, coprophagyin the water column is most likely a minor consideration. Theamount of chlorophyll sinking out of the euphotic zone usuallyrepresents <1% of the standing crop, and is usually only5% or less than the phaeopigment flux. This suggests that grazingis the predominant process accounting for the major loss ofchlorophyll from the water column. ¹Contribution no. 1332 from the School of Oceanography, Universityof Washington, Seattle, WA 98195, USA. ²Present address: The Biological Laboratories, Harvard University,Cambridge, MA 02138, USA.     

Community structures of heterotrophic bacteria of copepod fecal pellets

The total and heterotrophic bacterial microflora of gut andfecal pellets of the copepod Temora stylifera was studied inthe coastal zone of the northwestern Mediterranean basin. Digestivetracts and feces were always found to contain bacteria. Withmean values close to 10¹¹ cells ml^–1and 10¹⁰ colony-formingunits (CFU) ml^–1, both total and heterotrophic communitiesfound in fecal pellets largely exceeded the corresponding bacterialmicroflora observed in surrounding seawater (10⁵ cells ml¹ and10³ CFU ml^–). In the same way, the frequency of dividingcells and mean cell volumes increased, respectively, from 3%and 0.12µm³ in seawater to >6% and 0.24 µm³ infecal pellets. The bacterial community structure was investigatedby carrying out 29 morphological and biochemical tests on 147isolated strains. Although Pseudomonas was always the most frequentlyencountered genus, the bacterial communities found in copepodfecal pellets clearly differ from those inhabiting seawater.Vibrio species, which were not detected in seawater microflora,were always present in fecal pellet communities. The close correspondenceobserved between the potential metabolic characteristics ofthe fecal bacterial communities isolated from a subantarcticdeposit feeder (Mytilus edulis) and from zooplankton in thisMediterranean study suggests that the fecal community differentiationis an even more general feature.     

Estimating abundance of Sitka black-tailed deer using DNA from fecal pellets

Densely vegetated environments have hindered collection of basic population parameters on forest-dwelling ungulates. Our objective was to develop a mark–recapture technique that used DNA from fecal pellets to overcome constraints associated with estimating abundance of ungulates in landscapes where direct observation is difficult. We tested our technique on Sitka black-tailed deer (Odocoileus hemionus sitkensis) in the temperate coastal rainforest of Southeast Alaska. During 2006–2008, we sampled fecal pellets of deer along trail transects in 3 intensively logged watersheds on Prince of Wales Island, Alaska. We extracted DNA from the surface of fecal pellets and used microsatellite markers to identify individual deer. With genotypes of individual deer, we estimated abundance of deer with moderate precision (±20%) using mark–recapture models. Combining all study sites, we identified a 30% (SE = 5.1%) decline in abundance during our 3-year study, which we attributed to 3 consecutive severe winters. We determined that deer densities in managed land logged >30 years ago (7 deer/km², SE = 1.3) supported fewer deer compared to both managed land logged <30 years ago (10 deer/km², SE = 1.5) and unmanaged land (12 deer/km², SE = 1.4). Our study provides the first estimates of abundance (based on individually identified deer) for Sitka black-tailed deer and the first estimates of abundance of an unenclosed ungulate population using DNA from fecal pellets. Our tool enables managers to accurately and precisely estimate the abundance of deer in densely vegetated habitats using a non-invasive approach. © 2011 The Wildlife Society.     

Concurrent observations on gut interior and fecal pellets of marine crustaceans

Bacterial colonization on feces of the copepod Pseudocalanusnewmani and the amphipod Themisto japonica lacking intestinalbacteria was delayed compared with feces of the copepod Calanusplumchrus which possesses enteric bacteria.     

Presence of bacteria in guts of marine crustaceans and on their fecal pellets

Bacteria were present in the guts of the amphipod Caprella kroyeriand the copepod Eucalanus bungii and also within or on theirfecal pellets egested within 2 h in the laboratory.     

Effects of time and rainfall on PCR success using DNA extracted from deer fecal pellets

Non-invasive wildlife research using DNA from feces has become increasingly popular. Recent studies have attempted to solve problems associated with recovering DNA from feces by investigating the influence of factors such as season, diet, collection method, preservation method, extraction protocol, and time. To our knowledge, studies of this nature have not addressed DNA degradation over time in wet environments, and have not been performed on fecal pellets of ungulates. Therefore, our objective was to determine the length of time a fecal pellet from a Sitka black-tailed deer (Odocoileus hemionus sitkensis) could remain in the field in a temperate rainforest environment before the DNA became too degraded for individual identification. Pellets were extracted from the rectum of recently killed deer and placed in an environment protected from rainfall and in an environment exposed to rainfall. Pellets from each treatment group were sampled at intervals of 2, 7, 14, 21, and 28 days after deer harvest. DNA was extracted from sampled pellets and individual samples were genotyped using microsatellite markers. Amplification failure and errors (dropout and false alleles) were recorded to determine extent of DNA degradation. Eighty percent of samples in the protected environment and 22% of samples in the exposed environment were successfully genotyped during the 28-day experiment. With no samples being successfully genotyped in the exposed environment after 7 days, our study showed that rainfall significantly increases degradation rates of DNA from ungulate pellets.     

Carbon and nutrient mineralization and fungal spore composition of fecal pellets from voles in Minnesota

Numerous investigators have suggested that small mammals may regulate ecosystem processes because they couple producers and decomposers through deposition of fecal matenals and by dispersing spores from mycorrhizal symbiotic fungi We investigated carbon nitrogen, and phosphorus mineralization rates from feces of two arvicoline rodents, Clethrionomn gapperi and Microtus pennsylianicus common in the forests of the Lake Superior region We also examined fungal spore composition from these feces Mineralizable pools of C and N and their decay rates were higher in feces from C gapperi than from M pennsvhamcus , but there were no differences in sizes of mineralizable pools of phosphorus Feces of C gapperi contained four times more fungal spores than those of M pennsylvanicus Twenty-three fungal genera were represented in these feces, and all but one genus have predominantly ectomycorrhizal forms Fungal species composition also differed significantly between the two arvicoline species Although the amount of N and P mineralized annually from populations of these two species is small compared with nutrient budgets for the forests as a whole, these species may be important in dispersing spores and labile nutrient pools to microsites of seedling establishment     

Mortierella thereuopodae,a new species with verticillate large sporangiophores,inhabiting fecal pellets of Scutigeromorpha

A new species, Mortierella thereuopodae, is described for a fungus sporulating on fecal pellets of the centipede Thereuopoda clunifera (Chilopoda). The species produces large cymosely to verticillately branched sporangiophores on well-developed rhizoids with the formation of chlamydospore clusters.     

Discrimination of chemical stimuli in conspecific fecal pellets by a visually adept iguanid lizard,Crotaphytus collaris

Iguanid lizards are known for visual acuity and a diminished vomeronasal organ, which has led to mixed conclusions on whether iguanids use chemical cues. The collared lizard, Crotaphytus collaris, is a territorial iguanid that lives in open rocky habitats. Fecal pellets placed prominently on open rocky perches may provide an ideal mechanism for intraspecific chemical signaling. In order to determine whether collared lizards can discriminate between chemical stimuli found in conspecific fecal pellets, we collected 24 males and 25 females to analyze sex-specific behavioral responses via tongue-flicks and a newly observed behavior for the species, gular pumps, to cotton swabs containing water, cologne, chemical stimuli from conspecific male and female fecal pellets, and the lizard’s own fecal pellet. Both sexes were able to discriminate chemical stimuli from water via at least one behavior. Male collared lizards exhibited greater rates of response (tongue-flick and gular pumps) toward male fecal pellets when compared to the negative water control. Our results also suggest individuals may be able to discriminate between fecal pellets, as indicated by generally greater (but non-significant) counts of male tongue-flick responses to male fecal pellets when compared to their own. Collared lizard chemical discrimination appears to utilize tongue-flick and gular pump behaviors, possibly associated with distinct chemosensory modes (vomerolfaction and olfaction). Based on this study, we suggest that chemical signals may play a greater role in intraspecific communication than previously thought in this highly visual lizard.     

Implications for the mesopelagic microbial gardening hypothesis as determined by experimental fragmentation of Antarctic krill fecal pellets

1. Detritivores need to upgrade their food to increase its nutritional value. One method is to fragment detritus promoting the colonization of nutrient‐rich microbes, which consumers then ingest along with the detritus; so‐called microbial gardening. Observations and numerical models of the detritus‐dominated ocean mesopelagic zone have suggested microbial gardening by zooplankton is a fundamental process in the ocean carbon cycle leading to increased respiration of carbon‐rich detritus. However, no experimental evidence exists to demonstrate that microbial respiration rates are higher on recently fragmented sinking detrital particles.
2. Using aquaria‐reared Antarctic krill fecal pellets, we showed fragmentation increased microbial particulate organic carbon (POC) turnover by 1.9×, but only on brown fecal pellets, formed from the consumption of other pellets. Microbial POC turnover on un‐ and fragmented green fecal pellets, formed from consuming fresh phytoplankton, was equal. Thus, POC content, fragmentation, and potentially nutritional value together drive POC turnover rates.
3. Mesopelagic microbial gardening could be a risky strategy, as the dominant detrital food source is settling particles; even though fragmentation decreases particle size and sinking rate, it is unlikely that an organism would remain with the particle long enough to nutritionally benefit from attached microbes. We propose “communal gardening” occurs whereby additional mesopelagic organisms nearby or below the site of fragmentation consume the particle and the colonized microbes.
4. To determine how fragmentation impacts the remineralization of sinking carbon‐rich detritus and to parameterize microbial gardening in mesopelagic carbon models, three key metrics from further controlled experiments and observations are needed; how particle composition (here, pellet color/krill diet) impacts the response of microbes to the fragmentation of particles; the nutritional benefit to zooplankton from ingesting microbes after fragmentation along with identification of which essential nutrients are being targeted; how both these factors vary between physical (shear) and biological particle fragmentation.

     

Morphological features and viability of Scrippsiella trochoidea cysts isolated from fecal pellets of the polychaete Capitella sp.

To investigate the impact of grazing by the polychaete Capitella sp. on the two cyst morphotypes of Scrippsiella trochoidea, the typical morphotype with short calcareous spines (spiny-type cyst) and artificially induced the transparent type without calcareous spines (naked-type cyst), we examined the morphological features and germination capability of the two cyst morphotypes isolated from fecal pellets of the polychaete Capitella sp. produced in a restricted habitat. The morphological destruction was observed in both spiny- and naked type cysts after passage through the gut of Capitella sp., and this seemed to occur rapidly for naked-type cysts. In addition, the germination of both spiny- and naked-type cysts isolated from fecal pellets on day 2 of harvesting was significantly reduced and subsequently completely abolished, in contrast to previous findings from ingestion studies. Our results indicate that continual grazing by Capitella sp. within a restricted habitat can compromise the survival of S. trochoidea cysts.     

Novel extraction of German cockroach (Dictyoptera: Blattellidae) fecal pellets enhances efficacy of spray formulation insecticides

Methanol extracts of German cockroach, Blattella germanica (L.), fecal pellets have limited use as pheromone attractants in the urban environment because of their unpleasant color and odor. To eliminate these characteristics, a novel aqueous extract of German cockroach feces was formulated. Fetal material was extracted with methylene chloride and mixed with water. The aqueous phase of the extract was colorless and relatively odorless compared with methanol fecal extracts. Aqueous extract was bioassayed and compared with methanol extracts for aggregation activity. The efficacy of chlorpyrifos and boric acid formulations was tested with and without the addition of fecal extracts. In tests with chlorpyrifos, the addition of the aqueous extract produced significantly greater mortality in young nymphs than either chlorpyrifos alone or chlorpyrifos + methanol extract. There were no differences in mortality between the 2 extract + boric acid treatments during the test period, and both enhanced mortality.     

Yeast diversity and killer activity dispersed in fecal pellets from marsupials and rodents in a Brazilian tropical habitat mosaic

Yeasts with counts of above 10⁶ g⁻¹ wet weight and high diversity were found in the fecal pellets of rodents and marsupials from a mosaic of forest fragments, grasslands, cultivated fields and pasture in Rio de Janeiro. The most frequently isolated yeasts were Debaryomyces hamsenii, Pichia membranaefaciens and Issatchenkia orientalis (and its anamorph Candida krusei ), probably reflecting a high fruit content in the diet of these animals. The opportunistic pathogens Candida albicans, Candida glabrata and Candida tropicalis were isolated at lower frequency. Some Pichia anomala and P. membranaefaciens cultures had killer activity affecting many of the other isolates. These animals can be involved in dispersal of yeasts.     

Bacteria associated with a marine planktonic copepod in culture. I. Bacterial genera in seawater, body surface, intestines and fecal pellets and succession during fecal pellet degradation

In laboratory experiments, the bacterial flora of the zooplanktonmicrobial environments seawater, fecal pellets and associatedwith the external and internal surfaces of the copepod Acartiatonsa(Dana) were examined. The bacteria associated with fecal pelletswere dominated by Bacillus spp., Cytophaga/Flavobacterium spp.,Vibrio spp. and Pseudomonas spp. The same genera were foundin the seawater (0.22 7mu;m filtered) in which the pellets wereincubated. The bacteria showed a characteristic growth succession,and the abundance increased several orders of magnitude in theseawater during incubation of the pellets, indicating growthand proliferation based on the disintegrating/degrading fecalpellets. A carbon budget calculation revealed that organic matterfrom degrading fecal pellets could cover the carbon demand forthe growing bacterioplankton. The composition of the bacterialcommunity in the seawater and the fecal pellets also indicateda colonization of the pellets from bacterioplankton. The compositionof the bacteria associated with the copepods showed that bacterialgenera characterized as surface associated were preferentiallyassociated with fecal pellets, animal surfaces and intestines.This suggests a specific intestinal flora in the cultivatedcopepods composed of 10³ culturable bacteria per intestine (colony-formingunits, c.f.u.) or 10⁵ bacteria per intestine (acridine orangedirect counts, AODC), possibly colonizing the intestine passivelyduring filtration of algae. The activity of the bacterial communitieswas examined by the numencal ratio c.f.u.:AODC, where 1–19%of the bacteria were found active, with no significant differencebetween microbial environments.     

Sticholonche zanclea (Protozoa, Actinopoda) in fecal pellets of copepods and Euphausia sp. in Brazilian coastal waters.

Fecal pellets produced by mesozooplanktonic copepods (Centropages velificatus and Paracalanus parvus) and macrozooplanktonic Euphausiacea (Euphausia sp.) were examined using scanning electron microscopy. Fragments of the protozoan Sticholonche zanclea were found in both copepod and in Euphausia sp. fecal pellets, even when the abundance of the protozoan in the water was low. The results suggest that S. zanclea is an important food resource for different trophic levels, including meso- and macrozooplankton, in Brazilian coastal waters.     

Parasites in micromammal fecal pellets throughout the Late Holocene (“Cueva Peligro” paleontological site,Patagonia, Argentina)

Parasite remains in micromammal fecal pellets collected from the paleontological site “Cueva Peligro” (CP 43°40′18”S, 66°24′52”W), Chubut Province, Argentina, were examined. The samples were obtained from two grids, dated between 1220 ± 70¹⁴C yr B.P. to modern dates. Fecal pellets were whole processed, rehydrated, homogenized, and examined via light microscopy. Eggs of parasites found were measured and photographed. Fecal pellets belong to one or more insectivore to omnivore unidentified micromammal species, possibly sigmodontine rodents. A high number of helminthes species was recorded (11 species), eight nematodes, two anoplocephalid cestodes and one acanthocephalan species. The sigmodontine-parasite relationship varied throughout the studied period and between studied grids. This is the first time that Gongylonema sp. and Syphacia sp. are reported from ancient times from Patagonia. The obtained results contribute to the knowledge of parasite assemblages associated to native South American sigmodontine rodents and the zoonoses present in the area throughout the lasts 1200 years.     

Quantitative relationships between the numbers of fecal pellets, fecal weights and the weight of food eaten by tobacco hornworms,Protoparce sexta (Johan.) (Lepidoptera: Sphingidae)

Thenumber of fecal pellets was found to be an unreliable index of food consumption. There is, however, a high correlation between the weight eaten and the weight excreted. Nevertheless, caution must be exercised in using this relationship to compare consumption by different groups of larvae since the weight consumed per mg excreted varies with the quality of the food, the age and physiological state of the larvae and various environmental factors.

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Quantitative beziehungen zwischen kotballenzählungen, kotgewichten und dem gewicht der von tabakschwärmer-raupen,Protoparce sexta (Johan.) (Lepidoptera: Sphingidae), aufgenommenen nahrung

Zusammenfassung Die Verwendbarkeit von Kotballenzählungen und Kotgewichten als Maßstab für die vonProtoparce sexta-Raupen aufgenommene Nahrungsmenge wird kritisch untersucht. Es zeigt sich, daß die Anzahl der Kotballen kein verbindliches Maß für den Nahrungsgebrauch darstellt. Dagegen besteht eine konstant hohe Korrelation zwischen dem Trockengewicht der aufgenommenen Nahrung und dem Trockengewicht des Kotes. Jedoch darf beim Vergleich des Nahrungsverbrauchs verschiedener Gruppen von Raupen diese Beziehung nur mit Vorsicht benutzt werden, da das Verhältnis von verbrauchtem zu ausgeschiedenem Gewicht (der Nahrung bzw. des Kotes) mit der Nahrungsqualität, dem Alter und dem physiologischen Zustand der Raupen und mit den Umweltbedingungen variiert.

     

Aminoacylase pellets.

Aminoacylase was immobilized on the mycelium pellets of Aspergillus ochraceus by using albumin and glutaraldehyde. No difference in the optimum pH was observed between native aminoacylase and aminoacylase pellets. The aminoacylase pellets were stable in pH 4-8 but they were unstable in alkaline conditions. The aminoacylase pellets were more stable against heavy metal ions and inhibitors than native aminoacylase. However, the degree of the activation of aminoacylase with cobalt ion decreased with the immobilization. It was suggested that most of aminoacylase was covalently coupled to the mycelium with glutaraldehyde.