Microsatellite DNA Polymorphism in Intensely Enhanced Populations of Sea Trout (Salmo trutta) in the Southern Baltic

Sea trout (Salmo trutta) is an anadromous form of brown trout, a commercially important salmonid species in Europe. Stocking has been used to compensate for the decrease of natural populations and maintenance of fishery and angling catches. Over 1.5 million smolts and 4.5 million alevins are released to Polish coastal rivers each year. Variation at 7 microsatellite loci (Ssa197, Ssa171, Ssa85, Str15, Str73, Str591, and Str543) was used to study genetic polymorphism of spawners returning to 6 rivers. Application of distance method for comparison of pairs of populations based on number of different alleles (F _ST) revealed significant differences between Vistula and Wieprza, and Parseta as well as between Drweca and Wieprza, and Slupia. The level of heterozygosity was similar between most of the studied sea trout populations; considerable differences were found only for Str591. Differences in frequencies of a few alleles between populations were observed. An exact test of sample differentiation based on allele frequencies confirmed lack of significance of differentiation between the 6 pairs of populations (F _ST and R _ST). No admixture was observed in the studied populations. Possible effects of stocking on the genetic polymorphism of the sea trout populations in wild with implications for biotechnology are discussed.     

Small coastal streams—Critical reservoirs of genetic diversity for trout (Salmo trutta L.) in the face of increasing anthropogenic stressors

We used microsatellite markers to investigate levels and structuring of genetic diversity in trout (Salmo trutta L.) sampled from 16 rivers along the south coast of Cornwall in southwest England. This region is characterized by many small coastal streams with a few larger catchments. At a regional level, genetic structuring of contemporary populations has been influenced by a combination of events, including the last Ice Age and also more recent human activities over the last millennium. All populations are shown to have gone through strong genetic bottlenecks, coinciding with increased exploitation of mineral resources within catchments, beginning during the Medieval period. At more local levels, contemporary human‐induced habitat fragmentation, such as weir and culvert construction, has disproportionally affected trout populations in the smaller catchments within the study area. However, where small catchments are relatively unaffected by such activities, they can host trout populations with diversity levels comparable to those found in larger rivers in the region. We also predict significant future loses of diversity and heterozygosity in the trout populations inhabiting small, isolated catchments. Our study highlights how multiple factors, especially the activity of humans, have and continue to affect the levels and structuring of genetic diversity in trout over long timescales.     

Biology,distribution and ecology of <Emphasis Type="Italic">Didymosphenia geminata</Emphasis> (Lyngbye) Schmidt an abundant diatom from the Indian Himalayan rivers

Three years of studies on some Indian Himalayan rivers in Jammu & Kashmir, Himachal Pradesh, and Sikkim revealed the presence of Didymosphenia geminata (Lyngbye) M. Schmidt, a large diatom, hitherto unreported from these areas. This is first report on the occurrence of this diatom in some Indian Himalayan rivers: Kishanganga in Jammu & Kashmir, Ravi in Himachal Pradesh in Western Himalaya and in Teesta river and its two tributaries, Lachen Chhu and Lachung Chhu from Sikkim in the Eastern Himalaya. D. geminata is the most abundant taxon in both suspended and benthic algal communities in these rivers. The species exhibits wide ecological amplitude, allowing it to inhabit both cold and warm waters. We also recorded the exotic brown trout, Salmo trutta fario in these Himalayan rivers. However, in Central Himalayan rivers, Alaknanda, Bhilangana, Mandakini and Dhauliganga in Uttarakhand, where this diatom was absent the trout were absent too. Our studies indicate that D. geminata may extend its distribution range to other Himalayan rivers, hitherto uninhabited by the diatom, depending on the mode of introduction of exotic trout in these rivers.     

Food availability and growth rate in natural populations of the brown trout (Salmo trutta) in Corsican streams

The rivers of the island of Corsica, whose catchment areas are on crystalline rock, have low salt contents and their invertebrate fauna is qualitatively and quantitatively poorer than on the European mainland. The growth rate of trout in Corsica was analysed on samples from of six coastal rivers: the Tavignano, the Fium Orbo and the Golo on the west coast, the Prunelli, the Taravo and the Rizzanese on the east coast. Mesological data — conductivity, temperature, calcium content and altitude and biological data — biomass and linear growth rate of the trout, and density of benthic invertebrates — were collected at each of the sampling station.Analysis of variance of the size of three year old trout revealed three groups of rivers. The first includes the Tavignano, the Rizzanese and the Taravo, where the highest linear growth rates were recorded; the second consists of the Golo and the Prunelli, and the third, of the Fium Orbo. Principal component analysis gave two main axes on the basis of temperature and benthic invertebrate density for the first, and trout biomass for the second. Linear regression showed that benthic invertebrate density accounted for 75% of size variance of three year old trout. Evidence of the limiting role of the trophic factor is provided.     

Adult hairworms face the risk of ingestion by stream salmonids via predation on their cricket hosts

This study explored the risk of predation by trout (non-host predator) on adult hairworms Gordionus chinensis. Ten percent of trout (18 out of 187 trout) ingested adult hairworms in a Japanese headwater stream of the Totsu River. All hairworms were ingested by trout that had also ingested their insect definitive hosts (camel crickets: Tachycines elegantissima and T. asynamorus). Trout had never foraged hairworms directly in the two field experiments. These results suggest that hairworms were ingested by trout via predation on their hosts. Large trout ingested hairworms more frequently than smaller trout did. The larger trout were more abundant in the main stem compared with the upper tributary, which might suggest spatial heterogeneity of predation risk for adult hairworms within a river system.     

Food borne parasites as indicators of trophic segregation between Arctic charr and brown trout

The habitat and diet choice and the infection (prevalence and abundance) of trophically transmitted parasites were compared in Arctic charr and brown trout living sympatrically in two lakes in northern Norway. Arctic charr were found in all main lake habitats, whereas the brown trout were almost exclusively found in the littoral zone. In both lakes the parasite fauna reflected the niche segregation between trout and charr. Surface insects were most common in the diet of trout, but transmit few parasites, and accordingly the brown trout had a relatively low diversity and abundance of parasites. Parasites transmitted by benthic prey such as Gammarus and insect larva, were common in both salmonid host species. Copepod transmitted parasites were much more common in Arctic charr, as brown trout did not include zooplankton in their diets. Parasite species that may use small fish as transport hosts, were far more abundant in piscivorous fish, especially brown trout. The seasonal dynamics in parasite infection were also consistent with the developments in the diet throughout the year. The study demonstrates that the structure of parasite communities of charr and the trout is highly dependent on shifts in habitat and diet of their hosts both on an annual base and through the ontogeny, in addition to the observed niche segregation between the two salmonid species.     

Trout Salmo spp. complex in Serbia and adjacent regions of the western Balkans: reconstruction of evolutionary history from external morphology

The multivariate phenetic approach to the classification of Salmo spp. samples from Serbia and adjacent regions of western Balkans for 22 continuous external morphological characters suggests the occurrence of the following distinct stocks: West Danubian (Crno Osoje Stream and upper Zeta River) Salmo taleri , marble trout Salmo marmoratus (Trebuščica River), hatchery-reared Atlantic Salmo trutta , Mlava River drainage (Mlava and Krupaja rivers and Buk Stream) trout Salmo cf. trutta , Velika Morava River system (Godljevača, Bela and Resava rivers) trout S. cf. trutta , Ohrid Lake belvica Salmo ohridana and Aegean coastal drainage Salmo macedonicus (Božica River). In contrast to the phenetic similarity, the phylogenetic reconstruction places the Lake Ohrid belvica as part of an unresolved polytomy with other trout groups. Salmo cf. trutta in the Mlava River appears to form the basal group for the trout species in the region. The position of marble trout implies its independent and more recent origin from the West Danubian trout stock.     

The status of brown and rainbow trout, Salmo trutta and S. gairdneri as hosts of the acanthocephalan, Pomphorhynchus laevis

The status of brown and rainbow trout as hosts of Pomphorhynchus laevis was studied in the field and by means of laboratory investigations. Field data indicated that rainbow trout might belong to the group of preferred hosts of P. laevis , whereas brown trout belonged to the group in which the parasite achieved less than optimal growth and maturation. This was confirmed by laboratory infections. In rainbow trout P. laevis attained up to three times the growth rate in brown trout and maturation occurred whereas in brown trout establishment was lower, growth slower and no parasites matured. Changes in the behaviour of infected Gammarus pulex induced by the presence of P. laevis cystacanths were such as to render the shrimps more vulnerable to predation by trout and other surface and mid-water feeding fish, and selective predation upon infeged G. pulex by fish was demonstrated. nvestigations into the stimuli necessary for eversion of cystacanths of P. laevis revealed that the most important factor was a non-specific component of bile, and it was concluded that cystacanths were likely to evert in any species of fish. Recognition of the different status of brown and rainbow trout as hosts of P. laevis still fails to explain some peculiarities in the distribution of the parasite in the British Isles, where in Britain it occurs in trout in only one river but in Ireland in all rivers throughout the country. It is suggested that the Irish parasites may constitute a different strain of P. laevis , since they use a different species of intermediate host and are better able to survive in brown trout.     

Atlantic salmon (Salmo salar) and brown trout (Salmo trutta) differ in their suitability as hosts for the endangered freshwater pearl mussel (Margaritifera margaritifera) in northern Fennoscandian rivers

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Genetic differentiation among sea trout, Salmo trutta L., populations from western Norway

Samples of sea trout, Salmo trutta L., were collected by electrofishing in eight rivers of western Norway. The samples consisted mainly of presmolt, but also contained some spawners. Muscle, eye and liver tissue were sampled and analysed for allozyme polymorphism by standard starch gel electrophoresis. Nine polymorphic loci were found. The genotype as well as the allele distributions was significantly different in all but six pair‐wise comparisons, showing the high degree of population differentiation in this anadromous species. Even some nearby rivers displayed very different allele frequencies. The correlation between genetic and geographic distances was nearly significant.     

Cladocera of coastal rivers of western Nigeria

Recent studies indicate that there are at least 100 species of Cladocera in the families Bosminidae, Chydoridae, Daphnidae, Macrothricidae, Moinidae and Sididae in the inland waters of Nigeria. Over 50% of these have been found in net plankton samples from the coastal rivers in addition to Evadne tergestina Claus (Family: Podonidae), and Daphnia barbata Weltner, hitherto unreported in the equatorial lowlands of Africa. In effect, the Cladocera of the coastal rivers and creeks consist of the marine/brackish assemblage made up of Penilia avirostris Dana and Evadne tergestina and the freshwater assemblage made up of all other Cladocera found. Unlike in the more inland water bodies, the freshwater assemblage of the coastal rivers is dominated by the Bosminids Bosmina longirostris (O. F. Muller) and Bosminopsis deitersi Richard. The distribution, seasonality and successional patterns of Cladocera in the coastal water bodies of Western Nigeria is presented.     

Ecological variation in invasive brown trout (Salmo trutta) within a remote coastal river catchment in northern Patagonia complicates estimates of invasion impact

Salmonids were first introduced into the Chilean fresh waters in the 1880s, and c. 140 years later, they are ubiquitous across Chilean rivers, especially in the southern pristine fresh waters. This study examined the brown trout (Salmo trutta) and native taxa ecology in two adjacent but contrasting rivers of Chilean Patagonia. During spring 2016 and spring–fall 2017 we examined the variation in benthic macroinvertebrate and fish community composition and characterized fish size structure, stomach contents, and stable isotopes (δ¹³C and δ¹⁵N) to understand population structure, fish diet, and trophic interactions between S. trutta and native taxa. The native Galaxias maculatus (puye) dominated the fish community (74% of abundance). S. trutta was less abundant (16% of survey catch) but dominated the fish community (over 53%) in terms of biomass. S. trutta showed distinct diets (stomach content analysis) in the two rivers, and individuals from the larger river were notably more piscivorous, consuming native fish with a relatively small body size (<100-mm total length). Native fishes were isotopically distinct from S. trutta, which showed a wider isotopic niche in the smaller river, indicating that their trophic role was more variable than in the larger river (piscivorous). This study provides data from the unstudied pristine coastal rivers in Patagonia and reveals that interactions between native and introduced species can vary at very local spatial scales.     

Trout induces a shift from preferred habitat types for indigenous species: the example of the indigenous catfish, <Emphasis Type="Italic">Amphilius uranoscopus</Emphasis> (Pfeffer, 1889), on an African montane plateau

This study investigated the impact of introduced rainbow trout, Oncorhynchus mykiss, on the distribution and feeding of mountain catfish, Amphilius uranoscopus, on the Nyika Plateau, Malawi. Twenty-four sites were sampled over three different periods in three rivers. Fish habitat units were identified as separate riffle or pool, about 100 m in length, at each site. Each habitat unit was sampled for fish, invertebrates and physical habitat characteristics. Twenty four and 20 habitat units were sampled, respectively, from sites with catfish and sites with trout and catfish. In the absence of trout, the mountain catfish was associated with all depth ranges, with strong preference to shallow and moderate depth, and moderate to fast flow on coarse substratum type (gravel, pebble and boulder). In the presence of trout, the catfish was frequently associated with very shallow depth and slow flow. In its natural habitat, the catfish fed randomly, but preferred the most abundant invertebrate taxa, especially black fly larvae (Simuliidae). In the presence of trout, the catfish preferred mostly the chironomids. The preference by catfish for Simuliidae, also preferred by trout, was less in the trout streams than in its natural habitat. The prey taxa in the catfish stream were diverse, and consisted of large invertebrate predators. Trout streams were dominated by few prey taxa, especially black flies and chironomids. The catfish of the Nyika Plateau may represent genetically unique populations in southern Africa. Introductions of trout into rivers where they currently do not occur on the Nyika should be prevented in order to maintain the genetic diversity of the Amphilius uranoscopus species complex. Handling editor: J. A. Cambray     

Stocking impact and migration pattern in an anadromous brown trout (Salmo trutta) complex: where have all the stocked spawning sea trout gone?

We examined polymorphism at seven microsatellite loci among sea trout (Salmo trutta) (n = 846) collected from three areas in the Limfjord (Denmark). We then assessed their potential population source by comparing, using a mixed stock analysis (MSA) Bayesian framework, their genetic composition to that of brown trout collected from 32 tributaries pooled into nine geographical regions (n = 3801) and two hatcheries (n = 222) used for stocking. For each of the three regional sea trout groups (western, central and eastern Limfjord, n = 91, n = 426, n = 329, respectively), MSA was conducted with (i) all individuals in the group, (ii) with the subset of spawning sea trout only and (iii) with the subset of foraging, nonspawning individuals only, a subset that consisted primarily of sea trout caught during their first year at sea. For all three regional sea trout groups, a higher proportion of individuals (regardless of whether they were foraging or spawning) appear to have originated from the rivers that drain locally, than from the rivers that drain in other parts of the Limfjord. This suggests (1) that sea trout, at least during their first year at sea, undertake limited migrations within the Limfjord system and (2) that sea trout on their spawning run were caught close to their natal rivers. The proportion of sea trout of hatchery origin varied widely among all three Limfjord areas and broadly reflected regional stocking histories, with high proportions of sea trout of domestic origin in the east (39.3%), where stocking with domestic trout was practised intensely at the time of sampling, and in the west (57.2%), where a programme of coastal stocking of post smolts took place over several years in the early 1990s. In contrast, in the central Limfjord, where stocking with domestic trout was largely abandoned in the early 1990s, the proportion of sea trout of domestic origin was only 8.5%. Interestingly, for all three regional sea trout groups, virtually no sea trout of hatchery origin were found among the spawning individuals, which were on average larger than the nonspawning sea trout. These results suggest that stocked domestic brown trout that become anadromous experience high mortality at sea and are therefore largely absent among the larger, spawning individuals. We conclude that sea trout of domestic origin exhibit much reduced ability to reproduce and are unlikely to contribute significantly to the local gene pool largely because of a relatively high mortality at sea before the onset of maturity.     

Microsatellite analyses of the trout of northwest Mexico)

The trout of northwest Mexico represent an undescribed group of fish considered part of the Oncorhynchus mykiss (Pacific trout) complex of species and subspecies. Recent genetic studies have shown these fish to have important genetic diversity and a unique evolutionary history when compared to coastal rainbow trout. Increased levels of allelic diversity have been found in this species at the southern extent of its range. In this study we describe the trout in the Sierra Madre Occidental from the rios Yaqui, Mayo, Casas Grandes and de Bavispe, and their relationship to the more southern distribution of Mexican golden trout (O. chrysogaster) using 11 microsatellite loci. Microsatellite allelic diversity in Mexican trout was high with a mean of 6.6 alleles/locus, average heterozygosity=0.35, and a mean F _st=0.43 for all loci combined. Microsatellite data were congruent with previously published mtDNA results showing unique panmictic population structure in the Rio Yaqui trout that differs from Pacific coastal trout and Mexican golden trout. These data also add support for the theory of headwaters transfer of trout across the Continental Divide from tributaries of the Rio de Bavispe into the Rio Casas Grandes. Rio Mayo trout share a close genetic relationship to trout in Rio Yaqui, but sample sizes from the Rio Mayo prevent significant comparisons in this study. Microsatellite analyses show significant allelic frequency differences between Rio Yaqui trout and O. chrysogaster in Sinaloa and Durango Mexico, adding further support for a unique evolutionary status for this group of northwestern Mexican trout.     

Impact of habitat fragmentation on the genetics of populations in dendritic landscapes

1. The effect of habitat fragmentation on freshwater species has been addressed using brown trout Salmo trutta L. as a model species with a dendritic population structure. 2. Microsatellite loci were employed as molecular markers. Levels of gene flow and population subdivision were determined in more than 1200 brown trout individuals inhabiting four south European rivers with contrasting patterns of fragmentation, defined by the presence of barriers. 3. The genetic units in the four rivers were restricted by artificial barriers, and gene flow among samples within each river was associated with the level of fragmentation of the river. 4. Loss of genetic diversity and dislocation of the dendritic model have been detected in fragmented rivers. These results emphasise the importance of mitigating the impact of dams by constructing passages to restore gene flow along the river, for fish and other migratory species, as well as the need for caution in relation to stocking in isolated areas to avoid problems of inbreeding.     

Invasive brown trout Salmo trutta induce differential growth strategies in the native snow trout Schizothorax richardsonii of Himalaya: Are natives in unaltered rivers better at picking the gauntlet of invasion?

Brown trout Salmo trutta is a potent global invader and its establishments have progressively altered physiologies, life-histories and niche-availabilities for native fish species. River impoundments further escalate its invasion potential. The Himalayan rivers however, stay uncharted for the effects of brown trout interactions with the native fish fauna. Snow trout Schizothorax richardsonii a Himalayan cold-water native, concerningly overlaps its range with brown trout. To understand its responses to invasion pressures, we investigated brown trout effects on the age and growth of snow trout populations in three rivers with varying levels of perturbation: (a) a dammed and (b) an undammed river with the invasive brown trout in comparison to (c) an undammed river without invasion pressures. We found sympatric snow trout in the undammed river to respond to brown trout invasion with fast life history responses, showing an early age-at-maturity (A₅₀ = 1.2 years) and fast growth with a higher growth constant (K = 0.40 yr⁻¹) and specific rate of linear growth across life. On the contrary, sympatric snow trout in the dammed river showed an explicitly slow life-history by maturing at a higher age (A₅₀ = 2.9 years) and a slow growth, with a lower growth constant (K = 0.26 yr⁻¹) and specific linear growth rates. Our findings suggest that, the snow trout appear to present stronger response to brown trout invasions when the river is unaltered and free from hydropower operations and damming. Further research is strongly warranted from other high-altitude Himalayan basins to delineate the variation in growth strategies exhibited by snow trout in sympatry with the invasives.     

The contribution of newly established populations to the dynamics of range expansion in a one-dimensional fluvial-estuarine system: rainbow trout (Oncorhynchus mykiss) in Eastern Quebec

Aim Rainbow trout (Oncorhynchus mykiss, Walbaum 1792) is an exotic salmonid invading eastern Canada. First introduced for recreational fishing in Ontario, Quebec and the Maritime provinces, the species is now spreading in salmon rivers located in Eastern Quebec, where its stocking is strictly forbidden. Newly established populations have been found along the St Lawrence Estuary. To effectively mitigate the potential threat the invasion poses to native salmonids, we aimed to document the invasion’s origin and progress in the St Lawrence River and estuary. We first determined genetic origins among several potential wild and cultured source populations, found at the upstream and downstream extremities of the St Lawrence system. Thereafter, we studied the range expansion, predicting that the invasion process conforms to a one‐dimensional stepping‐stone dispersion model. Location Recently invaded salmon rivers that flow into the Estuary and Gulf of St Lawrence in Quebec, and watercourses supporting naturalized populations (Lake Ontario, Lake Memphremagog and Prince‐Edward‐Island rivers). Methods Rainbow trout from 10 potential source populations (wild and domestic strains) and 243 specimens captured in salmon rivers were genotyped at 10 microsatellite loci. Genetic origins of specimens and relationship between colonies were assessed using assignment analyses based on individuals and clusters. Results Invasion of rainbow trout in Eastern Quebec is directed downstream, driven by migrants from upstream naturalized populations, found in the Ganaraska River (Lake Ontario), and, to a lesser extent, in Lake Memphremagog. Populations from the Maritime provinces and domestic strains do not contribute to the colonisation process. A recently established population in Charlevoix (Eastern Quebec) supplies other downstream colonies. Main conclusions Rainbow trout is spreading from Lake Ontario downstream to Eastern Quebec using the St Lawrence River system as an invasion corridor. Range expansion in a downstream direction is driven by a more complex stepping‐stone dispersion model than predicted. Management options to protect native salmonids include reducing the effective size of the Charlevoix population, impeding reproduction in recently colonized rivers, halting the upstream migration of anadromous spawners, and curtailing stocking events inside the stocking area.     

Migrations of sea trout, Salmo trutta L., from the Vardnes river in northern Norway

During the periods 1956–1963 and 1967–1970 traps were operated to catch upstream- and downstream-migrating sea trout, Salmo trutta L. A total of 15 788 sea trout were tagged, using Carlin tags. The number of recaptures made in the traps was 4481, of which 1796 were recaptured more than once.
The distribution of the 2122 recaptures in the sea provides a picture of the sea-migration pattern. Of the sea recaptures, 52.8% were reported as within a distance of 3 km from the river mouth, compared to 0.7% more than 80 km away. All the different size-groups of sea trout were represented among both the long-distance and the short-distance migrants. The results of this study of sea trout migrations are discussed in relation to the published results for Atlantic salmon, Salmo salar L., and sea charr, Salvelinus alpinus (L.), from the same river.
The four highest values recorded for mean distance of daily travel away from the river were 20, 8, 8 and 6km day⁻¹ by smolts and 6, 6, 5 and 5km day⁻¹ by larger-sized sea trout.
Recaptures of tagged sea trout in rivers other than the Vardnes totalled 506, of which 306 had been tagged as smolts. The calculated minimum percentage of stray is 15.5%. The proportion of sea trout from the Vardnes river that actually spawn in other rivers is not known. No significant difference in length distribution was found between the sea trout caught in the Vardnes river and those caught in other rivers. An hypothesis concerning the selective advantages of straying by anadromous salmonids living in small rivers is discussed.     

Aquatic plants of Peru: diversity, distribution and conservation

Currently 177 vascular plant species are known or presumed to be obligately associated with water in Peru. Their composition and diversity were surveyed in relationship to their distributions among the natural regions of Peru. Despite considerable aridity, the coastal plains of Peru have important aquatic ecosystems, including marshes in river deltas and mangroves in the far north, near the border with Ecuador; 70 species of aquatic plants are found in this coastal region. The Andean highlands include a great variety of wetlands, plus lakes and rivers; 62 species are found, including eight species of Isoetes, some of which are potentially threatened by extinction. The Amazon region of Peru includes both steep montane rivers in the headwaters and wide floodplains formed by meandering rivers in the lowlands; 102 species are found distributed among these ecosystems, although many additional species are semi-aquatic. Research and conservation strategies for Peru's aquatic plants need to take into account these important regional differences.