Ecotypes of wild rooibos (Aspalathus linearis (Burm. F) Dahlg., Fabaceae) are ecologically distinct

Aspalathus linearis (Burm. F) Dahlg., Fabaceae is cultivated by small- and large-scale commercial farmers of the Cederberg and Bokkeveld Plateau in the Cape Floristic Region of South Africa, for the production of an herbal beverage called ‘rooibos’ or ‘rooibos tea’. Small-scale farmers also harvest A. linearis from the wild and market the tea as an organic and fair-trade certified product. However, little is known about the apparent ecotypes of wild A. linearis. We hypothesized that 1) rooibos ecotypes are ecologically distinct (occurring in different plant communities defined by environmental variables); 2) rooibos ecotypes are functionally distinct due to variance in water use efficiency; and 3) rooibos ecotypes are associated with threatened vegetation types/species, making populations of wild rooibos ecotypes worthy of conservation. Ecotypes of wild rooibos were identified based on plant habit and local knowledge. Plant communities were classified using Twinspan, environmental factors were tested as predictors of ecotype distribution and water use efficiency of ecotypes growing across a rainfall gradient was determined from foliar natural abundance of ¹³C. Wild rooibos was not generally associated with endangered vegetation types but was associated with plant species having endangered status. Wild rooibos occurred in four plant communities and comprised five wild rooibos ecotypes: shrub, tree, upright, salignus and prostrate types. Although some ecotypes clearly co-occurred, evidence is provided for habitat preference between the ecotypes: Prostrate and upright ecotypes occurred at higher elevations (> 400-600 m). Shrub ecotypes occurred at lower rainfall sites (< 200 mm p.a.) and the salignus ecotype occurred at higher rainfall sites (> 500 mm p.a.). Foliar ¹³C indicated greater water use efficiencies by ecotypes in relatively drier areas. The extent to which this is a plastic or inherent response requires further investigation. Considering that wild rooibos ecotypes differ both ecologically and possibly also functionally and genetically, it is concluded that populations of wild rooibos ecotypes should be considered as distinct and worthy of conservation. This distinctness should be considered when farmers apply for both harvesting and ploughing rights on land with wild rooibos ecotypes.     

Caesia sabulosa (Hemerocallidaceae), a new species from the Greater Cape Region of South Africa

The new species Caesia sabulosa Boatwr. and J.C.Manning from deep sands along the West Coast of South Africa and sandy flats in the Cederberg and Bokkeveld Escarpment is described. It is distinguished by its extensively branched rhizome resulting in a robust, clump-forming habit, and unique ‘palisade’ root system of closely packed, hard, vertical roots; mostly larger flowers; erect fruiting pedicels; and details of the seed testa sculpturing.     

Severely degraded dunes of the southern Kalahari: local extinction,persistence and natural re‐establishment of plants

This study aimed to quantify and understand the impact of severe land degradation on plant attributes and diversity on dunes of the southern Kalahari. Heavy grazing pressure in particular resulted in a significant decline of canopy cover and species number in annual and perennial life forms; forb and graminoid growth forms; erect and prostrate habits; and leafy stem, tussock and stoloniferous architectures. However, no significant change was found in shrub and tree forms which persisted without apparent new recruitment. Under these conditions, species diversity dropped sharply and a number of species, mainly graminoids, became apparently locally extinct. The perennial shrub, Crotalaria cf. spartioides, showed the converse with a high frequency of establishing seedlings on the degraded dunes. Changes in relative dominance show that the extreme treatment favours perennial over annual, woody over graminoid and forb, erect over prostrate and leafy stem over stoloniferous and tussock. Some of these results and certain species and soil responses differ from those reported from grazing studies elsewhere, and are possibly no longer directly related to the impact of the primary grazing pressure but to the secondary effect of subsequent instability of the dunes.     

Rooibos (Aspalathus linearis) beyond the farm gate: From herbal tea to potential phytopharmaceutical

Aspalathus linearis (Burm.f.) Dahlg. (Fabaceae, Tribe Crotalarieae), an endemic South African fynbos species, is cultivated to produce the well-known herbal tea, rooibos. It is currently sold in more than 37 countries with Germany, the Netherlands, the United Kingdom, Japan and the United States of America representing 86% of the export market in 2010. Its caffeine-free and comparatively low tannin status, combined with its potential health-promoting properties, most notably antioxidant activity, contributes to its popularity. First marketed in 1904 in its fermented (oxidised) form, green rooibos is a new product recently on the market. The utilisation of rooibos has also moved beyond a herbal tea to intermediate value-added products such as extracts for the beverage, food, nutraceutical and cosmetic markets. Its potential as a phytopharmaceutical, shown in recent scientific studies, has not yet been exploited. This review focuses on past and current research aimed at enhancing the value of rooibos herbal tea as a specialised, niche product and expanding its value-adding potential against the background of its traditional use and the current market. The focus falls specifically on aspects such as composition, processing, quality and rooibos as food and potential medicine.     

The attached form of the endangered freshwater alga Aegagropila linnaei Kützing (Chlorophyta) is found in the Zuideindigerwiede, The Netherlands

The freshwater green macroalga Aegagropila linnaei used to occur in several locations in The Netherlands in unattached growths forms (including the enigmatic ‘lake balls’) more than 60 years ago. A recent survey of most of the historical collection sites of the species reported the attached growth form for the first time for The Netherlands, but only in miniscule quantities and from one location only. Here we report on the finding of the attached form from the Zuideindigerwiede, one of the two historical collection sites that had not been surveyed previously. Unattached growth forms do not seem to occur anymore in The Netherlands, and the species as a whole must be regarded as rare and endangered.     

Chemotaxonomy of New Zealand red algae in the family Gigartinaceae (Rhodophyta) based on galactan structures from the tetrasporophyte life-stage

The identification of the polysaccharides from tetrasporophytic plants of nine endemic New Zealand species belonging to the Gigartinaceae, ‘Gigartina’ ancistroclada, ‘G.’ grandifida, Gigartina dilatata, G. divaricata, G. macrocarpa, G. marginifera, G. pachymenioides, G. sp. ‘Lindauer 164’ and Sarcothalia livida using infra-red spectroscopy in conjunction with constituent sugar and glycosyl linkage/substitution analysis is reported. All nine species contain galactans with structures consistent with λ-type carrageenans. Differences in the structures of the galactans in these and a further six previously studied species indicate chemotaxonomically distinct groupings that correspond to Sarcothalia, ‘Sarcothalia’ and Gigartina genera plus some outliers. These distinct, chemotaxonomic groupings are aligned to those determined by rbcL sequence analysis reported in the literature.     

Evolution of erect growth forms in domesticated wheats: possible effects of grazing

Summary Wild wheats tend to have a prostrate growthform during the early part of their vegetative growth phase. However, at a later stage the leaves and spike-bearing stalks change the pattern of growth and develop in an erect position. Domesticated wheats develop differently, with an erect growth form dominating the entire growth phase.It is suggested that heavy grazing, especially during early winter months might have played a role in the eradication of spontaneously appearing erect mutants of wild wheat. Such mutants increased in frequency only under domestication.     

Assessment of agroeconomic indices in polycultures of lettuce, rocket and carrot through uni- and multivariate approaches in semi-arid Brazil

The polyculture among vegetables is an activity that to have good results, needs a proper planning. Although it often requires more labor, has several advantages over monoculture, among them is that polycultures are generally are more productive, provide with productivity of various plant constituents and a more balanced human diet, contribute to economic return, economic and yield stability, social benefits and farmer's direct participation in decision-making. The objective of this study was to evaluate agroeconomic indices of polycultures derived from the combination of two cultivars of lettuce with two cultivars of rocket in two cultures strip-intercropped with carrot cultivar ‘Brasilia’ through uni-multivariate approaches in semi-arid Brazil. The experimental design used was of randomized complete blocks with five replications and the treatments arranged in a factorial scheme of 2 × 2. The treatments consisted of the combination of two lettuce cultivars (Babá de Verão and Tainá) with two rocket cultivars (Cultivada and Folha Larga) in two cultures associated with carrot cv. Brasília. In each block were grown plots with two lettuce cultivars and two rocket cultivars, and carrot in sole crop. In each system was determined the lettuce leaf yield, rocket green mass yield and carrot commercial yield. Agrieconomic indices such as operational cost, gross and net income, monetary advantage, rate of return, profit margin, land equivalent ratio and yield efficiency for DEA were used to measure the efficiency of intercropping systems. In the bicropping of lettuce and rocket associated with carrot cv. ‘Brasilia’, suggests the use of lettuce cultivar ‘Tainá’ combined with rocket cultivars ‘Cultivada’ or ‘Folha Larga’. It was observed significant effect of lettuce cultivars in the evaluation of polycultures of lettuce, carrot and rocket, with strong expression for the lettuce cultivar ‘Tainá’. Both uni- and multivariate approaches were effective in the discrimination of the best polycultures.     

Differential responses of three grasses to defoliation,water and light availability

Grazing not only modifies the structure and functioning of grasslands, it also changes micro-environmental conditions that alter the availability of resources. The aim of this study was to analyze the response of grasses with different photosynthetic pathways (C₃/C₄), growth forms (prostrate/erect), and grazing responses (increaser/decreaser) to defoliation and resource availability. In a greenhouse, we performed a factorial experiment with three factors: defoliation, light, and water and three species: Axonopus affinis (C₄ prostrate, increaser), Coelorachis selloana (C₄ erect, decreaser), and Bromus auleticus (C₃ erect, decreaser). We measured the relative growth rate (RGR), biomass assignment, and specific leaf area. The RGR of both C₄ species was affected by light availability, while the decreaser C₃ did not respond to any factor. Biomass allocation to leaves and stolons changed with the interaction between light and water in the C₄ prostrate species (increaser). In the C₄ erect grass (decreaser), biomass allocation was more affected by defoliation under low levels of light and water. Low light availability and defoliation reduced the assignment to leaves, while the allocation to rhizomes increased. Species-specific responses to resources availability that are modified by grazing were related to photosynthetic pathway, growth form, and grazing responses. Biomass allocation was related to strategies to avoid and/or tolerate grazing. The investment to leaves was limited by light and water availability in prostrate species, while in erect grasses it was controlled by defoliation and water availability. Our results highlight the importance of species responses to changes in resource availability associated to grazing regimes.     

Association of a luminous Vibrio sp., taxonomically related to Vibrio harveyi, with Clytia linearis (Thornely, 1900) (Hydrozoa, Cnidaria)

A previously unknown association between a luminous Vibrio sp., taxonomically related to the species Vibrio harveyi and a common member of the shallow/mid water communities of the Mediterranean Sea, the hydrozoan Clytia linearis is described. All the specimens of C. linearis observed under blue light excitation showed both a natural luminescence appearing as a series of fine dots due to clytin, and a clear fluorescence on the external side of the perisarc around the colonies due to the presence of luminous bacteria. Luminous bacteria were isolated from the surface of C. linearis, their phenotypic characterization as isolates was performed by several morphological, biochemical, and cultural tests, completed with 16S rDNA sequence analysis. All the isolates were referred to a Vibrio sp. taxonomically related to V. harveyi. The association of the V. harveyi-related species with C. linearis, as already suggested for another hydroid, Aglaophenia octodonta, could be explained with the activity of these bacteria of feeding on the chitinous structures present in these hydroids. Moreover, the adhesion of the luminous bacterium (here referred to as Vibrio sp. CL1) on C. linearis may contribute to the survival of this Vibrio species in the marine environment providing a suitable growth habitat.     

Himantura tutul sp. nov. (Myliobatoidei: Dasyatidae), a new ocellated whipray from the tropical Indo-West Pacific,described from its cytochrome-oxidase I gene sequence

It has been previously established that the Leopard Whipray, Himantura leoparda, consists of two genetically isolated, cryptic species, provisionally designated as ‘Cluster 1’ and ‘Cluster 4’ (Arlyza et al., Mol. Phylogenet. Evol. 65 (2013) [1]). Here, we show that the two cryptic species differ by the spotting patterns on the dorsal surface of adults: Cluster-4 individuals tend to have larger-ocellated spots, which also more often have a continuous contour than Cluster-1 individuals. We show that H. leoparda's holotype has the typical larger-ocellated spot pattern, designating Cluster 4 as the actual H. leoparda. The other species (Cluster 1) is described as Himantura tutul sp. nov. on the basis of the nucleotide sequence of a 655-base pair fragment of its cytochrome-oxidase I gene (GenBank accession No. JX263335). Nucleotide synapomorphies at this locus clearly distinguish H. tutul sp. nov. from all three other valid species in the H. uarnak species complex, namely H. leoparda, H. uarnak, and H. undulata. H. tutul sp. nov. has a wide distribution in the Indo-West Pacific, from the shores of eastern Africa to the Indo-Malay archipelago. H. leoparda under its new definition has a similarly wide Indo-West Pacific distribution.     

Genetic diversity and species-specific PCR-based markers from AFLP analyses of Thai bananas

A large amount of banana genetic resource has been found in Thailand which is believed to be one of the centers of its origins. To assess genetic diversity and determine genetic relationships of edible bananas in Thailand, 110 accessions of banana species and cultivars collected from villages and natural locations were investigated. UPGMA clustering of numerical data from Amplified Fragment Length Polymorphism (AFLP) patterns showed two large groups which corresponded to genome designations of Musa acuminata (AA) and Musa balbisiana (BB), the known ancestors of most edible cultivars. The AFLP data suggested that among Thai bananas, AA and AAA cultivars were closely related to M. acuminata subsp. malaccensis, while some of ‘B’ genome contained ones closely related to wild M. balbisiana in Thailand and some may have been imported. Eight species-specific PCR-based primer pairs, generated from the AFLP results clearly identify ‘A’ and ‘B’ genomes within cultivars and hybrids. The analyses were useful to readily and easily infer progenitors of these cultivars and pronounce wide genetic diversity of the bananas in Thailand.     

Insight into the role of cetaceans in the life cycle of the tetraphyllideans (Platyhelminthes: Cestoda)

Four types of tetraphyllidean larvae infect cetaceans worldwide: two plerocercoids differing in size, ‘small’ (SP) and ‘large’ (LP), and two merocercoids referred to as Phyllobothrium delphini and Monorygma grimaldii. The latter merocercoid larvae parasitize marine mammals exclusively and exhibit a specialised cystic structure. Adult stages are unknown for any of the larvae and thus the role of cetaceans in the life cycle of these species has been a long-standing problem. The SP and LP forms are thought to be earlier stages of P. delphini and M. grimaldii that are presumed to infect large pelagic sharks that feed on cetaceans. A molecular analysis of the D2 variable region of the large subunit ribosomal DNA gene based on several individuals of each larval type collected from three Mediterranean species of cetaceans showed consistent and unique molecular signatures for each type regardless of host species or site of infection. The degree of divergence suggested that LP, P. delphini and M. grimaldii larvae may represent separate species, whereas SP may be conspecific with M. grimaldii. In all host species, individuals of SP accumulated in the gut areas in which the lymphoid tissue was especially developed. We suggest therefore that these larvae use the lymphatic system to migrate to the abdominal peritoneum and mesenteries where they develop into forms recognizable as M. grimaldii. The plerocercoid stage of P. delphini remains unknown. In a partial phylogenetic tree of the Tetraphyllidea, all larvae formed a clade that included a representative of the genus Clistobothrium, some species of which parasitize sharks such as the great white which is known to feed on cetaceans. A bibliographic examination of tetraphyllidean infections in marine mammals indicated that these larvae are acquired mostly offshore. In summary, the evidence suggests that cetaceans play a significant role in the life cycle of these larvae. In addition, it seems clear that cetaceans act as natural intermediate hosts for P. delphini and M. grimaldii, as within these hosts they undergo development from the plerocercoid stage to the merocercoid stage. Because tetraphyllidean species use fish, cephalopods and other marine invertebrates as intermediate hosts, the inclusion of cetaceans in the life cycle would have facilitated their transmission to apex predators such as the large, lamnid sharks. The biological significance of infections of LP in cetaceans is unclear, but infections do not seem to be accidental as such larvae show high prevalence and abundance as well as a high degree of site specificity, particularly in the anal crypts and bile ducts.     

Inter- and intraspecific variation in the genitalia of the ‘Melitaea phoebe group’ (Lepidoptera, Nymphalidae)

The ecology and phylogeny of the Melitaeini butterflies have received considerable attention in the last few years. Several publications have been based on research using molecular methods. Genital morphometry has already been published on two sibling species but without any accompanying taxonomic revision of related species or their intraspecific taxonomy. In this study the morphology of genitalia was analysed by landmark-based geometric morphometrics in males and by traditional morphometrics in females. Based on these morphological characters, the whole M. phoebe group (subg. Cinclidia) was revised. According to our results M. telona Fruhstorfer, 1908 is conspecific with M. ‘phoebe’ ornata Christoph, 1893. Thus, we consider M. telona a junior synonym of M. ornata, and we propose new combinations: M. ornata ornata Christoph, 1893, M. ornata telona Fruhstorfer, 1908, M. ornata amanica Rebel, 1917, M. ornata capreola Varga, 1967, M. ornata emipunica Verity, 1919, M. ornata enoch Higgins, 1941, M. ornata kovacsi Varga, 1967, M. ornata nigrogygia Verity, 1938, M. ornata ogygia Fruhstorfer, 1907 and M. ornata totila Stauder, 1914 based on the rule of priority. The validity of the species status of M. punica and M. scotosia was confirmed, whereas M. sibina and M. pseudosibina could not be separated from M. phoebe using morphometrics. A new species from Iran (Zagros Mts.) was described as M. zagrosi sp. n. In addition, the whole geographical range of M. ornata was reconsidered and some biogeographical connections were discussed. In M. ornata four morphotypes were found based on genitalia: 1. ‘Western type’: including the Italian, Hungarian and SW Ukrainian populations; 2. ‘Eastern type’: with a much extended distribution ranging from the Balkan Peninsula through Asia Minor to Kazakhstan; 3. ‘The Levant type’ (=M. ornata telona comb. nov.); 4. ‘Northern Iranian type’ (Kopeth Dagh and Elburz Mts.). The distribution of these morphotypes can be attributed to historic separation in distinct glacial refugia.     

Rye oxidative stress under long term Al exposure

Aluminium (Al) toxicity decreases plant growth. Secale cereale L. is among the most Al-tolerant crop species. In order to study the response to Al-long term exposure, two rye genotypes with different Al sensitivity (‘D. Zlote’ and ‘Riodeva’) were exposed to 1.11 and 1.85 mM Al and the antioxidant responses were followed for 2 and 3 weeks in roots and leaves. Al toxicity signals, such as a severe decrease in root growth, occurred sooner in ‘Riodeva.’ The antioxidant response was dependent on the genotype, the organ, Al concentration and the exposure period. Al-exposed roots of ‘D. Zlote’ showed earlier enhancements of APX, SOD and G-POX activities than those of ‘Riodeva.’ ‘D. Zlote’ roots showed stimulation of the AsA–GSH cycle after the second week (when root growth inhibition was less severe), while later (when severe root growth inhibition was observed), oxidation of AsA and GSH pools was observed. In leaves of both genotypes, CAT, SOD and G-POX activities increased with Al exposure. In these leaves, the effect of AsA–GSH was time dependent, with maximum oxidation at the second week, followed by recovery. We confirmed that the oxidation state of AsA and GSH pools is involved in the detoxification of Al-induced oxidative stress. Moreover, our data demonstrate that the production of ROS does not correlate with the Al-induced root growth decrease. Finally, the differences observed over time indicate that long term exposure may provide additional information on rye sensitivity to Al, and contribute to a better understanding of this species’ mechanisms of Al tolerance.     

Mycoplasma feriruminatoris sp. nov., a fast growing Mycoplasma species isolated from wild Caprinae

Five Mycoplasma strains from wild Caprinae were analyzed: four from Alpine ibex (Capra ibex) which died at the Berlin Zoo between 1993 and 1994, one from a Rocky Mountain goat collected in the USA prior to 1987. These five strains represented a population different from the populations belonging to the ‘Mycoplasma mycoides cluster’ as tested using multi locus sequence typing, Matrix-assisted laser desorption/ionization time of flight mass spectrometry analysis and DNA–DNA hybridization. Analysis of the 16S rRNA gene (rrs), genomic sequence based in silico as well as laboratory DNA–DNA hybridization, and the analysis of phenotypic traits in particular their exceptionally rapid growth all confirmed that they do not belong to any Mycoplasma species described to date. We therefore suggest these strains represent a novel species, for which we propose the name Mycoplasma feriruminatoris sp. nov. The type strain is G5847^T (= DSM 26019^T = NCTC 1362^T).     

Characterization of the complete mitochondrial genome of Chilo auricilius and comparison with three other rice stem borers

The mitogenome of Chilo auricilius (Lepidoptera: Pyraloidea: Crambidae) was a circular molecule made up of 15,367 bp. Sesamia inferens, Chilo suppressalis, Tryporyza incertulas, and C. auricilius, are closely related, well known rice stem borers that are widely distributed in the main rice-growing regions of China. The gene order and orientation of all four stem borers were similar to that of other insect mitogenomes. Among the four stem borers, all AT contents were below 83%, while all AT contents of tRNA genes were above 80%. The genomes were compact, with only 121–257 bp of non-coding intergenic spacer. There are 56 or 62-bp overlapping nucleotides in Crambidae moths, but were only 25-bp overlapping nucleotides in the noctuid moth S. inferens. There was a conserved motif ‘ATACTAAA’ between trnS2 (UCN) and nad1 in Crambidae moths, but this same region was ‘ATCATA’ in the noctuid S. inferens. And there was a 6-bp motif ‘ATGATAA’ of overlapping nucleotides, which was conserved in Lepidoptera, and a 14-bp motif ‘TAAGCTATTTAAAT’ conserved in the three Crambidae moths (C. suppressalis, C. auricilius and T. incertulas), but not in the noctuid. Finally, there were no stem-and-loop structures in the two Chilo moths.     

Salt-stress induced changes in the leaf proteome of diploid and tetraploid mandarins with contrasting Na and Cl accumulation behaviour

To understand the genotypic variation of citrus to mild salt stress, a proteomic approach has been carried out in parallel on two citrus genotypes (‘Cleopatra’ and ‘Willow leaf’ mandarins), which differ for Na⁺ and Cl⁻ accumulation, and their cognate autotetraploids (4×). Using two-dimensional electrophoresis approximately 910 protein spots were reproducibly detected in control and salt-stressed leaves of all genotypes. Among them, 44 protein spots showing significant variations at least in one genotype were subjected to mass spectrometry analysis for identification. Salt-responsive proteins were involved in several functions, including photosynthetic processes, ROS scavenging, stress defence, and signalling. Genotype factors affect the salt-responsive pattern, especially that of carbon metabolism. The no ion accumulator ‘Cleopatra’ mandarin genotype showed the highest number of salt-responsive proteins, and up-regulation of Calvin cycle-related proteins. Conversely the ion accumulator ‘Willow leaf’ mandarin showed high levels of several photorespiration-related enzymes. A common set of proteins (twelve spots) displayed higher levels in salt-stressed leaves of 2× and 4× ‘Cleopatra’ and 4× ‘Willow leaf’ mandarin. Interestingly, antioxidant enzymes and heat shock proteins showed higher constitutive levels in 4× ‘Cleopatra’ mandarin and 4× ‘Willow leaf’ mandarin compared with the cognate 2× genotype. This work provides for the first time information on the effect of 8 weeks of salt stress on citrus genotypes contrasting for ion accumulation and their cognate autotetraploids. Results underline that genetic factors have a predominant effect on the salt response, although a common stress response independent from genotype was also found.