Crystal structures of MoCl2(O)(O2)(OPMePh2)2 and mixtures of MoCl2(O2)(OPPh3)2 and MoCl2(O)(O2)(OPPh3)2: allylic alcohol isomerization studies using MoCl2(O)(O2)(OPMePh2)2

Adding one equivalent of H₂O₂ to compounds of stoichiometry MoCl₂(O)₂(OPR₃)₂, OPR₃ = OPMePh₂ or OPPh₃, leads to the formation of oxo-peroxo compounds MoCl₂(O)(O₂)(OPR₃)₂. The compound MoCl₂(O)(O₂)(OPMePh₂)₂ crystallized with an unequal disorder, 63%:37%, between the oxo and peroxo ligands, as verified by single-crystal X-ray diffractometry, and can be isolated in reasonable yields. MoCl₂(O)(O₂)(OPPh₃)₂, was not isolated in pure form, co-crystallized with MoCl₂(O)₂(OPPh₃)₂ in two ratios, 18%:82% and 12%:88%, respectively, and did not contain any disorder in the arrangement of the oxo and peroxo groups. These complexes accomplish the isomerization of various allylic alcohols. A mechanism of this reaction has been constructed based on ¹⁸O isotopic studies and involves exchange between the alcohol and metal bonded O atoms.     

luxS基因缺失对禽致病性大肠杆菌O1、O2和O78三种血清型分离株的生物学特性影响

【目的】LuxS/AI-2型密度群体感应系统产生的自诱导信号分子AI-2(AI-2的产生需要luxS基因编码的Lux S蛋白参与)参与对细菌众多生理功能的调控。探讨luxS对不同血清型禽致病性大肠杆菌(Avian Pathogenicity Escherichia coli,APEC)生物学特性的影响。【方法】本研究以APEC优势血清型APECO_1(O_1血清型)、DE17(O_2血清型)、E940(O_(78)血清型)及其相应luxS缺失株为研究对象,对野生株和缺失株的生长特性、生物被膜形成、rdar(red,dry and rough)形态、运动性和耐药性等特性进行分析。【结果】luxS基因的缺失不影响APEC生长特性,但导致APEC不能产生AI-2;此外,luxS基因的缺失显著降低APECO_1和E940的生物被膜形成(P0.05),而DE17的生物被膜形成无显著变化。对各菌株的rdar形态和运动性检测结果表明,luxS基因的缺失改变了APECO_1的rdar形态,对DE17和E940并无影响;显著降低了APECO_1和DE17运动能力,对E940并无影响。荧光定量PCR检测结果表明,luxS基因的缺失显著降低APECO_1、DE17和E940与细菌运动性相关的鞭毛基因fli G和fli I的转录水平(P0.05)。此外,对各菌株的耐药性检测结果表明,luxS基因缺失导致APECO_1对头孢吡肟和丁胺卡那由耐药变为高敏,同时对氯霉素与E940相同由高敏变为耐药,但对DE17的耐药性无显著改变。【结论】luxS对APEC的生物学特性具有重要的调控作用,且这种调控具有菌株特异性。     

New preparations and molecular structures of cis-MCl2(Ph2PCH2PPh2)2, M = Ru,Os and trans-RuCl2(Ph2PCH2PPh2)2

The title compounds were made by reacting bis(diphenylphosphino)methane (dppm) with reduced solutions of OsCl₆^4? and Ru₂OCl₁₀^4?. The crystal and molecular structures of these compounds have been determined form three-dimensional X-ray study. The cis-isomers crystallize with one CHCl₃ per molecule of the complex. All three compounds crystallize in the monoclinic space group P2₁/n with unit cell dimensions as follows: Cis-OsCl₂(dppm)₂·CHCl₃: a = 13.415(4) Å, b = 22.859(4) Å, c = 16.693(3) Å, β = 105.77(3)°, V = 4926(3) ų, Z = 4. cis-RuCl₂(dppm)₂·CHCl₃: a = 13.442(3) Å, b = 22.833(7) Å, c = 16.750(4) Å, β = 105.53(2)°, V = 4953(3) ų, Z = 4. trans-RuCl₂(dppm)₂: a = 11.368(7) Å, b = 10.656(6) Å, c = 18.832(12) Å; β = 103.90(6)°, V = 2213(7) ų; Z = 2. The structures were refined to R = 0.044 (R_w = 0.055) for cis-OsCl₂(dppm)₂·CHCl₃; R = 0.065 (R_w = 0.079) for cis-RuCl₂(dppm)₂·CHCl₃ and R = 0.028 (R_w = 0.038) for trans-RuCl₂(dppm)₂. The complexes are six coordinate with stable four-membered chelate rings. The PMP angle in the chelate rings is ca. 71° in each case.     

Modelling O2 and O2 unidirectional fluxes in plants. III: Fitting of experimental data by a simple model

Photosynthetic assimilation of CO₂ in plants results in the balance between the photochemical energy developed by light in chloroplasts, and the consumption of that energy by the oxygenation processes, mainly the photorespiration in C₃ plants. The analysis of classical biological models shows the difficulties to bring to fore the oxygenation rate due to the photorespiration pathway. As for other parameters, the most important key point is the estimation of the electron transport rate (ETR or J), i.e. the flux of biochemical energy, which is shared between the reductive and oxidative cycles of carbon. The only reliable method to quantify the linear electron flux responsible for the production of reductive energy is to directly measure the O₂ evolution by ¹⁸O₂ labelling and mass spectrometry. The hypothesis that the respective rates of reductive and oxidative cycles of carbon are only determined by the kinetic parameters of Rubisco, the respective concentrations of CO₂ and O₂ at the Rubisco site and the available electron transport rate, ultimately leads to propose new expressions of biochemical model equations. The modelling of ¹⁸O₂ and ¹⁶O₂ unidirectional fluxes in plants shows that a simple model can fit the photosynthetic and photorespiration exchanges for a wide range of environmental conditions. Its originality is to express the carboxylation and the oxygenation as a function of external gas concentrations, by the definition of a plant specificity factor Sp that mimics the internal reactions of Rubisco in plants. The difference between the specificity factors of plant (Sp) and of Rubisco (Sr) is directly related to the conductance values to CO₂ transfer between the atmosphere and the Rubisco site. This clearly illustrates that the values and the variation of conductance are much more important, in higher C₃ plants, than the small variations of the Rubisco specificity factor. The simple model systematically expresses the reciprocal variations of carboxylation and oxygenation exchanges illustrated by a “mirror effect”. It explains the protective sink effect of photorespiration, e.g. during water stress. The importance of the CO₂ compensation point, in classical models, is reduced at the benefit of the crossing points Cx and Ox, concentration values where carboxylation and oxygenation are equal or where the gross O₂ uptake is half of the gross O₂ evolution. This concept is useful to illustrate the feedback effects of photorespiration in the atmosphere regulation. The constancy of Sp and of Cx for a great variation of P under several irradiance levels shows that the regulation of the conductance maintains constant the internal CO₂ and the ratio of photorespiration to photosynthesis (PR/P). The maintenance of the ratio PR/P, in conditions of which PR could be reduced and the carboxylation increased, reinforces the hypothesis of a positive role of photorespiration and its involvement in the plant-atmosphere co-evolution.     

Preparation and properties of an o-diphenol: O2 oxidoreductase from cocoa husk

A particulate preparation from cocoa husk which shows o-diphenol: O₂, oxidoreductase activity contains a copper protein moiety linked to a partially formed insoluble polyphenol polymer. The particles are easily stained with osmium tetroxide for electron microscopy and show marked o-diphenol-polymerisation properties when incubated with substrate. The activity and kinetic parameters of the particles against a number of substrates and inhibitors have been determined.     

Modelling O2 and O2 unidirectional fluxes in plants. IV: Role of conductance and laws of its regulation in C3 plants

Numerous studies focus on the measurement of conductances for CO₂ transfer in plants and especially on their regulatory effects on photosynthesis. Measurement accuracy is strongly dependent on the model used and on the knowledge of the flow of photochemical energy generated by light in chloroplasts. The only accurate and precise method to quantify the linear electron flux (responsible for the production of reductive energy) is the direct measurement of O₂ evolution, by ¹⁸O₂ labelling and mass spectrometry. The sharing of this energy between the carboxylation (P) and the oxygenation of photorespiration (PR) depends on the plant specificity factor (Sp) and on the corresponding atmospheric concentrations of CO₂ and O₂ ( André, 2013). The concept of plant specificity factor simplifies the equations of the model. It gives a new expression of the effect of the conductance (g) between atmosphere and chloroplasts. Its quantitative effect on photosynthesis is easy to understand because it intervenes in the ratio of the plant specificity factor (Sp) to the specificity of Rubisco (Sr). Using this ‘simple’ model with the data of ¹⁸O₂ experiments, the calculation of conductance variations in response to CO₂ and light was carried out.     

Synthesis and characterization of SrCu2(O2CR)3(bdmap)3 and Bi2(O2CCH3)4(bdmap)2(H2O) (R = CH3, CF3; bdmap = 1,3-bis(dimethylamino)-2-propanolato)

New mixed metal complexes SrCu₂(O₂CR)₃(bdmap)₃ (R = CF₃ (1a), CH₃ (1b)) and a new dinuclear bismuth complex Bi₂(O₂CCH₃)₄(bdmap)₂(H₂O) (2) have been synthesized. Their crystal structures have been determined by single-crystal X-ray diffraction analyses. Thermal decomposition behaviors of these complexes have been examined by TGA and X-ray powder diffraction analyses. While compound 1a decomposes to SrF₂ and CuO at about 380°C, compound 1b decomposes to the corresponding oxides above 800°C. Compound 2 decomposes cleanly to Bi₂O₃ at 330°C. The magnetism of 1a was examined by the measurement of susceptibility from 5–300 K. Theoretical fitting for the susceptibility data revealed that 1a is an antiferromagnetically coupled system with g = 2.012(7), −2J = 34.0(8) cm⁻¹. Crystal data for 1a: C₂₇H₅₁N₆O₉F₉Cu₂Sr/THF, monoclinic space group P2₁/m, A = 10.708(6), B = 15.20(1), C = 15.404(7) Å, β = 107.94(4)°, V = 2386(2) ų, Z = 2; for 1b: C₂₇H₆₀N₆O₉Cu₂Sr/THF, orthorhombic space group Pbcn, A = 19.164(9), B = 26.829(8), C = 17.240(9) Å, V = 8864(5) ų, Z = 8; for 2: C₂₂H₄₈O₁₁N₄Bi₂, monoclinic space group P2₁/c, A = 17.614(9), B = 10.741(3), C = 18.910(7) Å, β = 109.99(3)°, V = 3362(2) ų, Z = 4.     

On the O2 flash yields of two cyanophytes

We explored O₂ flash yield in two cyanophytes, Anacystis nidulans and Agmenellum quadruplicatum. On a rate-measuring electrode, a single flash gave a contour of O₂ evolution with a peak at about 10 ms which was maximum (100) for 680 nm background light. On 625 nm illumination the peak was smaller (62) but was followed by an increased tail of O₂ attributed to enhancement of the background. After a period of darkness, repetitive flashes (5 Hz) gave a highly damped initial oscillation in individual flash yields which finally reached steady state at 94% of the yield for 680 nm illumination. When O₂ of repetitive flashes was measured as an integrated flash yield the results was distinctive and similar to that for a continuous light 1 (680 nm). An apparent inhibition of respiration which persisted into the following dark period was taken as evidence for the Kok effect. With a concentration-measuring electrode, integrated flash yield vs. flash rate showed the same nonlinear behavior as O₂ rate vs. intensity of light 1. We draw three conclusions about the two cyanophytes. (a) The plastoquinone pool is substantially reduced in darkness. (b) Because of a high ratio of reaction centers, reaction center 1 / reaction center 2, for the two photoreactions, saturating flashes behave as light 1. (c) Because repetitive flashes are light 1, they also give a Kok effect which must be guarded against in measurements designed to count reaction centers.     

Developmental changes in the responses of O2 uptake and ventilation to acutely declining O2 tensions in larval krill Meganyctiphanes norvegica

The effect of exposure to acutely declining oxygen tensions on O₂ uptake (M_O2) and ventilation has been investigated in different larval stages of Northern krill Meganyctiphanes norvegica (calytopis III/early furcilia I, late furcilia I, furcilia III and V). An ability to regulate M_O2 during acutely declining P_O2 began to appear about furcilia III (critical O₂ tension or P_c=15.4±0.73 kPa) and had improved by furcilia V (P_c=12.6±0.39 kPa). Hypoxia-related hyperventilation was achieved by an increase in pleopod (but not thoracic limb) activity (P_c∼11 kPa), a sensitivity which also appeared at, or just before, furcilia V even though an earlier stage (furcilia III) had a full compliment of functional setose pleopods. While this regulatory ability appeared as the gills were beginning to form, furcilia V is still early in gill ontogeny compared with adults. Preexposure to very moderate hypoxia (60% and 70% O₂ saturation) of furcilia III and V resulted in substantial mortality, but where it did not (furcilia V, 80% O₂ saturation), there was no effect of keeping krill at this P_O2 on either M_O2 or ventilation, suggesting that the development of respiratory regulation in M. norvegica is not open to environmental influence in the same way as for other crustaceans. We suggest that ontogeny of pleopod control provides furcilia V+ with both a stronger means of propulsion, allowing the ontogeny of DVM but also with an ability to regulate M_O2 during exposure to acutely declining P_O2s. The onset of respiratory regulation (furcilia V) preceded the onset of DVM (furcilia VI+). As pleopod ontogeny is associated intimately with the ontogeny of DVM and respiratory regulation, in the Gullmarsfjord this co-occurrence is fortuitous as krill can be required during DVM to migrate into hypoxic water which they are not equipped to deal with, in physiological terms, before furcilia V.     

Synthesis, and crystal and molecular structures of the triflato and trifluoroacetato complexes of zinc, Zn(O3SCF3)2(DME)2 and [Zn(O2CCF3)2(DME)]n

Anhydrous Zn(O₃SCF₃)₂ and Zn(O₂CCX₃)₂, X=F, Cl, Br were obtained in substantially quantitative yields from ZnO (or ZnEt₂ in the case of the bromide derivative) and a mixture of the corresponding acid and anhydride in heptane as medium. The reactions are rapid and moderately exothermic. Recrystallization of the triflate and trifluoroacetate complexes from dimethoxyethane (DME) produced single crystals of Zn(O₃SCF₃)₂(DME)₂ (1) and [Zn(O₂CCF₃)₂(DME)]_n (2) suitable for X-ray diffraction studies. In both compounds zinc is hexacoordinated with a pseudo-octahedral geometry. Compound 1 is constituted by mononuclear molecules with terminal monodentate O₃SCF₃ ligands in trans position. A polynuclear chain structure was found for 2 with zinc atoms joined alternatively by triple and single carboxylato bridges, and with bidentate terminal DME.     

Bis(O2S2 macrocycle) complexes of palladium(II)

Two isomeric dibenzo-O₂S₂ macrocycles L¹ and L² have been synthesised and their coordination chemistry towards palladium(II) has been investigated. Two-step approaches via reactions of 1:1-type complexes, [cis-Cl₂LPd] (1a: L = L¹, 1b: L = L²), with different O₂S₂ macrocycle systems (L¹ and L²) have led to the isolation of the following bis(O₂S₂ macrocycle) palladium(II) complexes in the solid state: [Pd(L¹)₂](ClO₄)₂ (2a) and a mixture of [Pd(L¹)₂](ClO₄)₂ (2a) + [Pd(L²)₂](ClO₄)₂ (2b).     

Metal complexes of 2,4-diamino-5-(3′,4′,5′-trimethoxybenzyl)pyrimidine, (trimethoprim). Part II. Synthesis,magnetic characterization and X-ray structure of [Cu2(O2CCH3)4(trimethoprim)2]·2C6H6·CH3OH

The reaction of [Cu₂(O₂CCH₃)₄·2H₂O] with trimethoprim is reported. In methanol a green solution was obtained, which, on adding benzene, yielded tetrakis(μ-acetato)bis(trimethoprim)dicopper(II) di-benzene methanol solvate. The compound crystallizes with four molecules per cell in the monoclinic space group C2/c, with a = 24.109(5), b = 15.256(3), c = 16.532(3) Å, β = 116.89(2) for λ(Mo-Kα) = 0.71073 Å. The copper atoms are bridged by four acetate groups to form the binuclear molecule [Cu₂-(O₂CCH₃)₄(TMP)₂]·2C₆H₆·CH₃OH. The TMP ligand acts as a donor molecule through one pyrimidinic nitrogen atom.     

Synthesis and crystal structure of bis(tetramethylammonium) aquotetra-fluorodioxouranate(VI) dihydrate, [(CI3)4 N]2[UO2 F4(H2 O)]·2H2O

The title compound has been synthesized and subjected to crystal structure analysis. M_r = 548.50, m.p. 108.1 °C (decom.), orthorhombic, Im2m,a = 7.006(2), b = 8.938(2), c = 13.619(2) Å V = 852.8(3) ų, Z = 2, D_x = 2.136, D_m, (flotation in CCl₄/CH₂I₂) = 2.128 g cm^?3, λ(Mo-Kα) = 0.71069 Å, μ = 90.79 cm^?1, F(000) = 519.89, T = 295 K, final R_F = 0.036 and R_G = 0.044 for 566 observed reflections. The discrete [UO₂F₄(H₂0)]^2? anion has site symmetry m2m, its virtually linear uranyl moiety being surrounded by fluoro and aquo ligands occupying the vertices of a pentagon in the equatorial plane. Watet molecules serve to link the complex anions by hydrogen bonds into layers, between which the organic cations are accommodated.     

X-ray crystal Structure of [1,2-bis(diphenylphosphino)ethane]bis(3,5-dimethylpyrazole-N)platinum(II) tetrafluoroborate dichloromethane solvate, [(Ph2PCH2CH2PPh2)Pt(3,4-Me2pzH)2][BF4]2·CH2Cl2

The crystal structure of the compound [(Ph₂PCH₂CH₂PPh₂)Pt(3,5-Me₂pzH)₂][BF₄]₂·CH₂Cl₂ has shown that the ligands around the Pt atom are approximately in a square planar coordination, whereas the pyrazole rings point roughly in the same direction, away from the coordination plane. This unusual conformation is probably due to the hydrogen bonds with fluorine atoms of the BF₄^? anion. Bond distances and angles are compared with those in other pyrazole complexes.