Iridoviruses associated with epizootic haematopoietic necrosis (EHN) in aquaculture

Systemic infections of teleost fishes caused by iridoviruses have recently been recognized in Australia, Asia, Europe and the USA. These iridoviruses are different from those of the established genera Lymphocystivirus and Goldfish Virus 1-like Viruses of the family Iridoviridae. The agents exhibit similar physicochemical properties, are antigenically related and prove to be of high virulence to different teleost fishes in aquaculture. The first iridovirus, epizootic haematopoietic necrosis virus, responsible for an epizootic outbreak of haematopoietic necrosis in redfin perch, was reported in Australia. Some years later, similar iridovirus epizootics occurred in sheatfish and catfish in Europe. The Australian and the European isolates proved to be antigenically related and showed properties in common with frog virus 3, the type species of the genus Ranavirus of the Iridoviridae. Further iridovirus isolates from fish, amphibians and reptiles exhibited a close relationship with each other and with frog virus 3. It is important to note that the Australian amphibian iridovirus, Bohle iridovirus, was experimentally transmitted to teleost fish inducing high mortalities. The occurrence of similar viruses in different host species in the aquatic environment and their inter-species transmission emphasize the importance of health control in aquaculture.     

Molecular analyses of turf algae reveal a new species and an undetected introduction in the Pterosiphonieae (Rhodomelaceae,Rhodophyta)

Introduced seaweeds and undescribed species often remain undetected because marine regional floras are as yet poorly understood. DNA sequencing facilitates their detection, but databases are incomplete, so their improvement will continue to lead the discovery of these species. Here we aim to clarify the taxonomy of two turf-forming red algal Australian species that morphologically resemble the European Aphanocladia stichidiosa. We also aim to elucidate whether either of these species could have been introduced in Europe or Australia. We studied their morphology, analyzed 17 rbcL sequences of European and Australian specimens, examined their generic assignment using a phylogeny based on 24 plastid genomes, and investigated their biogeography using a taxon-rich phylogeny including 52 rbcL sequences of species in the Pterosiphonieae. The rbcL sequences of one of the Australian species were identical to A. stichidiosa from Europe, considerably expanding its known distribution. Unexpectedly, our phylogenetic analyses resolved this species in the Lophurella clade rather than in Aphanocladia and the new combination L. stichidiosa is proposed. The other Australian species is described as L. pseudocorticata sp. nov. Although L. stichidiosa was originally described in the Mediterranean ca. 70 years ago, our phylogenetic analyses placed it in a lineage restricted to the southern hemisphere, showing that it is native to Australia and introduced to Europe. This study confirms that further work using molecular tools is needed to characterize seaweed diversity, especially among the poorly explored algal turfs, and showcases the usefulness of phylogenetic approaches to uncover introduced species and to determine their native ranges.     

Genomic sequences of Australian bluetongue virus prototype serotypes reveal global relationships and possible routes of entry into Australia

Bluetongue virus (BTV) is transmitted by biting midges (Culicoides spp.). It causes disease mainly in sheep and occasionally in cattle and other species. BTV has spread into northern Europe, causing disease in sheep and cattle. The introduction of new serotypes, changes in vector species, and climate change have contributed to these changes. Ten BTV serotypes have been isolated in Australia without apparent associated disease. Simplified methods for preferential isolation of double-stranded RNA (dsRNA) and template preparation enabled high-throughput sequencing of the 10 genome segments of all Australian BTV prototype serotypes. Phylogenetic analysis reinforced the Western and Eastern topotypes previously characterized but revealed unique features of several Australian BTVs. Many of the Australian BTV genome segments (Seg-) were closely related, clustering together within the Eastern topotypes. A novel Australian topotype for Seg-5 (NS1) was identified, with taxa spread across several serotypes and over time. Seg-1, -2, -3, -4, -6, -7, -9, and -10 of BTV_2_AUS_2008 were most closely related to the cognate segments of viruses from Taiwan and Asia and not other Australian viruses, supporting the conclusion that BTV_2 entered Australia recently. The Australian BTV_15_AUS_1982 prototype was revealed to be unusual among the Australian BTV isolates, with Seg-3 and -8 distantly related to other BTV sequences from all serotypes.     

LYCHNOTHAMNUS BARBATUS(轮藻植物)的生态与保护研究

轮藻植物属Lychnothamnus(Rupr．)Leonh．自晚始新世即有化石代表,在上新世繁盛且分布广泛,此后分异度降低、分布范围缩减,延续至今仅存1种：L．barbatus(Meyen)Leonh．。上世纪末叶前该种还曾广泛分布于欧洲、印度、中国、巴布亚新几内亚和澳大利亚,而后该种在澳大利亚曾经留有记录的产地消失,直到1996年才被再次发现。本文描述了澳大利亚L．barbatus的居群特征,包括植株、卵囊球和藏卵器形态特征以及萌发生态学的实验研究结果。讨论该种的野外生态学、共生种、全球范围的分布与丰度特征,探讨该种衰落的原因并提出植物保护方案。     

A new species of Acanthobothrium van Beneden, 1850 (Tetraphyllidea: Onchobothriidae) from Pastinachus atrus (Macleay) (Batoidea: Dasyatidae) in Australian waters, with a reassessment of the host associations of Acanthobothrium spp. parasitising Pastinachus spp

A new Category 1 species of Acanthobothrium van Beneden, 1850 is described from the cowtail stingray Pastinachus atrus (Macleay) collected from the Gulf of Carpentaria near Weipa, Queensland, Australia. This species is unique among Acanthobothrium Category 1 species in that it retains gravid proglottids on its strobila. It differs further from the 34 other Category 1 species in total length, proglottid number and testis number. The host identities of other Acanthobothrium species reported from Pastinachus are revised based on recent taxonomic work on rays of this genus. Given the revised host taxonomy, according to which P. atrus is the only member of its genus occurring off Australia, this should be considered to be the fifth species of Acanthobothrium reported from this Australian endemic species.     

Flies on vacation: evidence for the migration of Australian Syrphidae (Diptera)

1. Hover flies (Syrphidae: Diptera) are a cosmopolitan group of insects that provide important ecosystem services including pollination and pest control. The seasonal migration of hover flies is probably best known in Europe, but it remains unstudied in many other parts of the world. 2. Australia is believed to be home to around 160 hover fly species, some of which are common in urban and agricultural environments. The current evidence for hover fly migration in Australia is scarce and anecdotal, yet migration may be critical to the success of pollination and the biological control of aphids. 3. In this study, species occurrence records from an online biodiversity database (Atlas of Living Australia) were used to look for evidence of migratory behaviours in all Australian hover flies with more than 200 occurrence records. 4. Four of the 10 species displayed seasonal changes in their distribution consistent with migration, including Australia's two most abundant species: Melangyna viridiceps and Simosyrphus grandicornis. This work is an important first step in understanding the prevalence of migration in Australian hover flies. However, confirmation of our findings requires additional evidence to rule out other plausible explanations for the observed patterns. 5. Based on changes in summer and winter latitudinal distribution, it is estimated that some Australian hover flies may make annual migrations of 400–1800 km. 6. This work suggests that the management of beneficial insects requires consideration of factors at both local and continental scales, as landscape use changes may have an impact on ecosystem services delivered hundreds of kilometres away.     

Amplified fragment length polymorphism (AFLP) reveals introgression in weedy Onopordum thistles: hybridization and invasion

Onopordum L. (Compositae) is an extremely diverse genus of thistles, which includes several species that have become serious pasture weeds in several regions of the world. We present a comparison of the genetic diversity in invasive forms of Onopordum from Australia with several known native European species. A total of 108 polymorphic genetic markers was generated using amplified fragment length polymorphism (AFLP) fingerprinting. Non-metric multidimensional scaling (NMDS) revealed that Australia contained O. acanthium, O. illyricum and a full range of genetic intermediates between these species. Intermediates largely comprised segregating fragments diagnostic for European O. acanthium and O. illyricum with a low frequency of fragments that were diagnostic for other species never recorded in Australia. The current genetic patterns in Australia may be best explained by a combination of processes, both in the native and in the alien range. These include multiple introductions of seed, including hybrid material, and the continuous dispersal in Australia, leading to an increase in the contact among hybridizing taxa. Such processes appear to have produced more widespread hybridization and introgression in Australian Onopordum than is found in Europe.     

Divergent patterns of allelic diversity from similar origins: the case of oilseed rape (Brassica napus L.) in China and Australia.

Oilseed rape (Brassica napus) in Australia and China have similar origins, with introductions from Europe, Canada, and Japan in the mid 20th century, and there has been some interchange of germplasm between China and Australia since that time. Allelic diversity of 72 B. napus genotypes representing contemporary germplasm in Australia and China, including samples from India, Europe, and Canada, was characterized by 55 polymorphic simple sequence repeat (SSR) markers spanning the entire B. napus genome. Hierarchical clustering and two-dimensional multidimensional scaling identified a Chinese group (China-1) that was separated from "mixed group" of Australian, Chinese (China-2), European, and Canadian lines. A small group from India was distinctly separated from all other B. napus genotypes. Chinese genotypes, especially in the China-1 group, have inherited unique alleles from interspecific crossing, primarily with B. rapa, and the China-2 group has many alleles in common with Australian genotypes. The concept of "private alleles" is introduced to describe both the greater genetic diversity and the genetic distinctiveness of Chinese germplasm, compared with Australian germplasm, after 50 years of breeding from similar origins.     

Introduction of a Brachylaima species (Digenea: Brachylaimidae) to Australia

A Brachylaima species recorded previously from the house mouse (Mus domesticus) in South Australia is shown to use the introduced European snails Cernuella virgata and Cochlicella barbara as first intermediate hosts, and the same two species and Theba pisana as second intermediate hosts. The life cycle is typical of Brachylaima species. The parasite is capable of infecting at least two species of native Australian rodent, Rattus fuscipes and Leporillus conditor. Because of the intermediate hosts used, it is hypothesized that this trematode species has been introduced from Europe. The parasite may be conspecific with one of a number of described European species but difficulties with the literature concerning these species have required that the present form be designated only as Brachylaima sp.     

Structure and biology of house mouse populations that plague irregularly: an evolutionary perspective

In Australia, populations of mice occasionally irrupt into plagues, mainly in the southern and eastern grain-growing regions. Mus domesticus was the only member of the subgenus Mus identified from a genetic survey of animals collected from four states. Little is known of the origin of these mice but they probably came from Europe where plagues do not occur. We examined whether mice have evolved the ability to plague since their colonization by comparing some population parameters of Australian, European and North American mice. Their helminth fauna were contrasted to gauge the importance of founder effects on the evolution of mice in Australia.
Australian mice share 52% (12 of 23) of the helminths found in mice in Europe and North America. Those not shared mainly had indirect life cycles. The absence of species could be explained by a strong founder effect or the lack of suitable intermediate hosts near Australian ports. There was no evidence that population structure or diet had evolved differently. Population abundance was different in field populations especially during the build-up and irruption of plagues. These differences were related to better breeding by mice in Australia in field environments; average number of embryos per litter was substantially higher and breeding seasons longer. Genetic change is not the only explanation for this increased productivity–a combination of lack of interspecific competition from other granivores and more favourable climatic conditions may be responsible.
All things considered, there was no compelling evidence that Australian mice have evolved the ability to plague. Their ability to respond to good conditions by increasing litter size beyond that recorded elsewhere supports the notion that control of mouse productivity is an appropriate management option for plague prevention.     

DNA barcoding discriminates the noxious invasive plant species, floating pennywort (Hydrocotyle ranunculoides L.f.), from non-invasive relatives

Floating pennywort (Hydrocotyle ranunculoides L.f.), a member of the plant family Araliaceae originating from North America, is an example of an invasive aquatic species posing serious problems to the management of waterways outside of its original distribution area in Australia and Western Europe. As a consequence, its import was banned in the Netherlands. It can be difficult to distinguish H. ranunculoides from other species of the genus on a morphological basis. In this regard, DNA barcoding may become a good alternative once this could be performed on a routine basis. In this study, we show that it is possible to distinguish H. ranunculoides from a series of closely related congeners by using a single plastid DNA sequence, trnH-psbA.     

Tracing the introduction history of the brown seaweed Dictyota cyanoloma (Phaeophyceae,Dictyotales) in Europe

Dictyota cyanoloma has recently been described from the Mediterranean Sea and Macaronesia but doubt had arisen as to whether this species was truly native in Europe. The species is mainly found on non-natural substrata (harbour walls, marinas, boat hulls, etc.), strongly suggesting that it is an introduction. Molecular sequence information from historical herbarium samples proves the presence of D. cyanoloma in the Adriatic Sea as early as 1935. Since approximately the year 2000, however, the number of records as well as the geographic range of the species has expanded significantly. The present-day distribution of D. cyanoloma occupies most of the Mediterranean Sea, Macaronesia, NW Africa and southern Portugal, but recent records from Galicia and SW England (Falmouth, Cornwall) indicate that the species is rapidly expanding northward. Collections from Australia demonstrated that the species is also present from Perth in Western Australia, over much of the southern Australian coastline up to Minnie Water in New South Wales. Phylogenetic analyses resolve D. cyanoloma in a sister clade to a previously unreported Australian Dictyota species. Analysis of genetic diversity of the mitochondrial markers (nad6–nad11 and atp9–orf11) reveals that even though Australian populations contain a much higher haplotype richness, European populations are also fairly diverse. Furthermore, only two out of 25 haplotypes are shared between both regions. These somewhat counterintuitive results could be indicative of a more complicated introduction history.     

Marsupial relationships and a timeline for marsupial radiation in South Gondwana

Recent marsupials include about 280 species divided into 18 families and seven orders. Approximately 200 species live in Australia/New Guinea. The remaining species inhabit South America with some of these secondarily ranging into North America. In this study, we examine marsupial relationships and estimate their divergences times using complete mitochondrial (mt) genomes. The sampling, which includes nine new mtDNAs and a total number of 19 marsupial genomes, encompasses all extant orders and 14 families. The analysis identified a basal split between Didelphimorphia and remaining orders about 69 million years before present (MYBP), while other ordinal divergences were placed in Tertiary times. The monotypic South American order Microbiotheria (Dromiciops gliroides, Monito del Monte) was solidly nested among its Australian counterparts. The results suggest that marsupials colonized Australia twice from Antarctica/South America and that the divergence between Microbiotheria and its Australian relatives coincided with the geological separation of Antarctica and Australia. Within Australia itself, several of the deepest divergences were estimated to have taken place close to the Eocene/Oligocene transition.     

Phylogeographic analysis of the brown alga Cutleria multifida (Tilopteridales,Phaeophyceae) suggests a complicated introduction history

In depth genetic comparisons of populations of Cutleria multifida (Tilopteridales, Phaeophyceae) collected from Europe, the northwestern Pacific Ocean, Australia and New Zealand using the DNA sequences of four gene regions (the mitochondrial cox2 and cox3 genes, the intergeneric spacer region adjacent to cox3, and the open reading frame) suggested that the northwestern European and Japanese populations were considerably greater in terms of their genetic divergence than Mediterranean, Australian or New Zealand populations. The haplotypes of the populations in northwestern European (distribution range including the type locality, seven haplotypes) and Japanese populations (seven haplotypes) were unique except for one shared haplotype. There were weak but positive correlations between the geographical distance and the genetic divergence among northwestern European and Japanese populations. Moreover, both female and male gametophytes occurred in eight of the nine Japanese localities, suggesting Japanese populations showed normal sexual heteromorphic life history of the species. In light of these results, it appears that Japanese populations were native to the area despite earlier hypothesis. In contrast, Australian and New Zealand populations were composed of only one haplotype that is very close to those found in northwestern Europe and Japan, suggesting a recent introduction history from Europe (or from northeastern Asia via Europe) by ship transport to Australia and New Zealand. The Mediterranean populations included two haplotypes identical to those found in northwestern Europe and Japan, and it is suggestive of transoceanic introductions of some populations between Mediterranean and Japanese coasts.     

A NEW HIPPOSIDERID GENUS (MICROCHIROPTERA) FROM AN EARLY MIOCENE BAT COMMUNITY IN AUSTRALIA

Abstract:  A new genus and species of hipposiderid bat is described from an early Miocene cave deposit (Bitesantennary Site) in the Riversleigh World Heritage fossil property, northern Australia. Eight hipposiderid genera are now recorded from Riversleigh's Miocene sediments: Hipposideros , Brachipposideros, Rhinonycteris , Riversleigha, Xenorhinos , Miophyllorhina , Archerops and Brevipalatus gen. nov. The new taxon appears to be most closely related to Australian endemic Rhinonycteris and Brachipposideros species, but its autapomorphically very short palate distinguishes it from other members of this relatively plesiomorphic group. It is one of eight hipposiderid species recovered from the Bitesantennary Site deposit, and one of 11 recorded from Riversleigh's early Miocene sediments. Compared with modern bat faunas, the early Miocene Riversleigh bat community differs strikingly in its high hipposiderid diversity but may differ less in its overall trophic structure.     

Phytogeography, range size and richness of Australian endemic Sauropus (Euphorbiaceae)

Aim To investigate the distribution of Australian species of Sauropus. The information obtained is used to (1) identify areas of highest richness and centres of endemism, (2) investigate latitudinal gradients of richness and range size, (3) determine the types of rarity shown, and (4) provide hypotheses on historical biogeography of the genus within Australia. Location Australia. Methods Specimens from 17 herbaria and field searches were examined and label and field information collated on distribution, habit and habitat. Distribution information was used to map all species within 784 grid cells of 1° × 1° and within the 97 Australian ‘ecological regions’. Morphometric cluster analysis of species was conducted using Kulczynski association and flexible UPGMA on 23 character states. Simple regression was used to correlate species richness, density and range size to changes in latitude. CLIMEX is used to match the climate of the region of highest richness in Australia with other areas of the world. Results Species richness was highest within the tropical north of Australia, and most species were associated with tropical savanna woodlands. Two areas were identified as centres of endemism and these corresponded closely to areas of high species richness. Four morphological groups were identified. One species (Sauropus trachyspermus) was found to be widespread, however all other species had small geographical ranges. Species richness and range size were significantly correlated with changes in latitude. Ten species were found to be of the rarest type, warranting conservation initiatives. Main conclusions Two regions of high richness and endemism of Sauropus occur, Thailand and Australia. Within Australia, the Kakadu‐Alligator River and the Cairns‐Townsville areas were identified as centres of endemism and high species richness for Sauropus. Australian Sauropus in general occur in similar communities and climates as other members of the genus elsewhere. Ten of the 27 species of Australian endemic Sauropus are extremely rare and warrant conservation initiatives. Correlations of latitude to species richness are potentially due to Sauropus radiating from the climatically stable top end of Australia. Increasing range size in more southern latitudes may also be due to stability of climates in the top end or because there is more available land area at these latitudes. Sauropus micranthus, the only non‐endemic species, is probably a more recent invader from the Tertiary period when tropical rain forests where more extensive and congruent with those of New Guinea.     

Populations of North American bean thrips, Caliothrips fasciatus (Pergande) (Thysanoptera: Thripidae: Panchaetothripinae) not detected in Australia

Abstract  Caliothrips fasciatus is native to the USA and western Mexico and overwintering adults are regular contaminants in the 'navel' of navel oranges exported from California, USA to Australia, New Zealand and elsewhere. Due to the long history of regular interceptions of C. fasciatus in Australia, a survey for this thrips was undertaken around airports, seaports, public recreational parks and major agricultural areas in the states of Queensland, New South Wales, Victoria, South Australia and Western Australia to determine whether C. fasciatus has successfully invaded Australia. Host plants that are known to support populations of C. fasciatus , such as various annual and perennial agricultural crops, urban ornamentals and weeds along with native Australian flora, were sampled for this thrips. A total of 4675 thrips specimens encompassing at least 76 species from a minimum of 47 genera, and three families were collected from at least 159 plant species in 67 families. Caliothrips striatopterus was collected in Queensland, but the target species, C. fasciatus , was not found anywhere. An undescribed genus of Thripidae, Panchaetothripinae, was collected from ornamental Grevillea (var. Robyn Gordon) at Perth (Western Australia) Domestic Airport, and is considered to be a native Australian species. This survey has provided valuable information on the background diversity of thrips species associated with various native and exotic plant species around major ports of entry and exit for four of five states in Australia. We suggest that the major reason C. fasciatus has not established in Australia is due to high adult mortality in navels that are kept at low storage temperatures (2.78°C) during an 18- to 24-day transit period from California to Australia.     

Marine Biodiversity in the Australian Region

The entire Australian marine jurisdictional area, including offshore and sub-Antarctic islands, is considered in this paper. Most records, however, come from the Exclusive Economic Zone (EEZ) around the continent of Australia itself. The counts of species have been obtained from four primary databases (the Australian Faunal Directory, Codes for Australian Aquatic Biota, Online Zoological Collections of Australian Museums, and the Australian node of the Ocean Biogeographic Information System), but even these are an underestimate of described species. In addition, some partially completed databases for particular taxonomic groups, and specialized databases (for introduced and threatened species) have been used. Experts also provided estimates of the number of known species not yet in the major databases. For only some groups could we obtain an (expert opinion) estimate of undiscovered species. The databases provide patchy information about endemism, levels of threat, and introductions. We conclude that there are about 33,000 marine species (mainly animals) in the major databases, of which 130 are introduced, 58 listed as threatened and an unknown percentage endemic. An estimated 17,000 more named species are either known from the Australian EEZ but not in the present databases, or potentially occur there. It is crudely estimated that there may be as many as 250,000 species (known and yet to be discovered) in the Australian EEZ. For 17 higher taxa, there is sufficient detail for subdivision by Large Marine Domains, for comparison with other National and Regional Implementation Committees of the Census of Marine Life. Taxonomic expertise in Australia is unevenly distributed across taxa, and declining. Comments are given briefly on biodiversity management measures in Australia, including but not limited to marine protected areas.