Pregnancy as a harm?

Michigan's Appellate Court ruled in 2004 that a pregnancy that resulted from a rape should be considered a bodily injury for sentencing purposes. Interestingly, all three possible outcomes of a pregnancy-abortion, miscarriage, or childbirth-are considered to bring with them significant and substantial physical, psychological, and emotional changes. While the immediate impact of the ruling in People v. Cathey affected only the guilty individual, there are larger implications for this ruling beyond just sentencing guidelines. The ruling can be considered a step forward in prosecuting rapists, but possibly at the expense of reimagining the female body. This article considers the Cathey ruling itself, the potential benefits and consequences of this understanding on feminist discourse, and, crucially, the impact of this decision on abortion discussions. The central question that emerges is, can we both consider pregnancy a harm and believe that this harm is not always wrong-making?     

MRM as a discovery tool?

Multiple‐reaction monitoring (MRM) of peptides has been recognized as a promising technology because it is sensitive and robust. Borrowed from stable‐isotope dilution (SID) methodologies in the field of small molecules, MRM is now routinely used in proteomics laboratories. While its usefulness validating candidate targets is widely accepted, it has not been established as a discovery tool. Traditional thinking has been that MRM workflows cannot be multiplexed high enough to efficiently profile. This is due to slower instrument scan rates and the complexities of developing increasingly large scheduling methods. In this issue, Colangelo et al. (Proteomics 2015, 15, 1202–1214) describe a pipeline (xMRM) for discovery‐style MRM using label‐free methods (i.e. relative quantitation). Label‐free comes with cost benefits as does MRM, where data are easier to analyze than full‐scan. Their paper offers numerous improvements in method design and data analysis. The robustness of their pipeline was tested on rodent postsynaptic density fractions. There, they were able to accurately quantify 112 proteins at a CV% of 11.4, with only 2.5% of the 1697 transitions requiring user intervention. Colangelo et al. aim to extend the reach of MRM deeper into the realm of discovery proteomics, an area that is currently dominated by data‐dependent and data‐independent workflows.     

XMRV as a Human Pathogen?

Xenotropic murine leukemia virus-related virus (XMRV) has been proposed to be associated with prostate cancer and chronic fatigue syndrome (CFS). This proposition has been controversial because many investigators have failed to replicate the reported associations. Here, we explore whether XMRV is an authentic human pathogen in the light of recent findings that indicate otherwise.     

Soil water potential as a factor in the ecology ofFusarium roseum f. sp.cerealis ‘Culmorum’

Summary The soil water potential (inferred from vapor pressure measurements by thermocouple psychrometry) influenced both chlamydospore germination and continuing growth of germlings ofFusarium roseum f. sp.cerealis ‘Culmorum’ the same way in two different soils. Chlamydospore germination in both Ritzville silt loam (RSL) and Palouse silt loam (PSL) amended with about 2,500 ppm C (as glucose) and 250 ppm N (as ammonium sulfate) was 40–50 per cent in 24 hours at water potentials down to −50 to −60 bars. Some germination occurred by 72 hours at −80 to −85 bars in both soils but not at lower potentials. At a potential of −10 bars or higher, germ tubes lysed or converted into new chlamydospores within 48–72 hours after germination, whereas at lower potentials germlings branched and appeared to grow for at least 6 days. Bacterial numbers/g of RSL, 24 and 72 hours after adding nutrients, were 200 to 300 times greater in soil at water potentials of −5 bars or more than in comparably treated soil at about −14 to −17 bars or less. Markedly reduced bacterial activity appeared to coincide with a water potential of about −9 to −10 bars. When streptomycin and neomycin (300 ppm each) were mixed into the soil in addition to nutrients, the survival of germlings of Culmorum was greatly enhanced, even in soil at potentials of less than −1 bar. Indications were that soil water potentials of −10 bars or more favored bacterial activity, and that this in turn repressed growth of germlings of Culmorum. Culmorum infections of below-ground parts of wheat are serious primarily in drier soils, possibly because the fungus escapes bacterial antagonism but can still extract water for growth. Cooperative investigations, Crops Research and the Water and Soil Conservation Research Divisions, Agricultural Research Service, U.S. Department of Agriculture and the Agricultural Experiment Stations of Idaho, Montana, Oregon, Utah, and Washington. Scientific Paper No.3152, College of Agriculture, Washington State University, Pullman.     

Expression of Mouse MT-Ⅰ as a Fusion Protein in Anabaena sp. PCC 7120

To produce mouse metallothionein_Ⅰ (mMT_Ⅰ) in cyanobacterium Anabaena sp. PCC 7120, a novel Escherichia coli_cyanobacterium shuttle fusion expression vector, pKG_MT, was constructed. Via this vector, mMT_Ⅰ cDNA which was fused with a carboxyl terminal extension of the 26 kD glutathione_S_transferase (GST) containing a thrombin specific site was expressed in Anabaena under the control of tac promoter. SDS_polyacrylamid gel electrophoresis (SDS_PAGE) showed that the fusion protein GST_MT was expressed in the transgenic Anabaena sp. PCC 7120 after induction with isopropylthio_β_D_galactoside (IPTG). Glutatione_S_transferase metallothionein (GST_MT) was purified from the crude extracts by affinity chromatography on immobilized glutathione and mMT_Ⅰ was obtained by digesting the fusion protein with thrombin on column and gel filtration on Sephadex G_50. SDS_PAGE demonstrated that the purified mMT_Ⅰ was the desired protein. The result of ELISA for the purified mMT_Ⅰ showed that the recovery of mMT_Ⅰ from the transgenic cyanobacterium was about 0.6 mg/g fresh weight. According to the data of atomic absorption assay, metal_binding activity of the purified mMT_Ⅰ was almost the same as that of wild type MT.     

Alzheimer's β-secretase cleaves a glycosyltransferase as a physiological substrate

Alzheimer's beta-secretase (BACE1) is a membrane-bound protease that cleaves the amyloid precursor protein (APP) in the trans-Golgi network, an initial step in the pathogenesis of Alzheimer's disease. Although BACE1 is distributed among various tissues including brain, its physiological substrate other than APP have not been identified. We have recently found that when BACE1 was overexpressed in COS cells together with α2,6-sialyltransferase (ST6Gal I), the secretion of ST6Gal I markedly increased, suggesting that BACE1 cleaves ST6Gal I as a physiological substrate. Thus BACE1 is the first identified protease that is responsible for the cleavage and secretion of glycosyltransferases. Published in 2004. This revised version was published online in August 2006 with corrections to the Cover Date.     

Towards a classification ofE. coli ribosomal proteins: A hypothetical ‘small ribosome’ as a primitive protein-synthesizing apparatus

Homologies were searched among the published primary sequences of 51E. coli ribosomal proteins, partly by eye and partly by computer-assisted methods. By employing Moore and Goodman's alignment statistics for evaluating homology levels, 33 out of these 51 ribosomal proteins has been classified into 9 homology groups, some of which being yet tentative and remaining to be further analyzed. Taking it into consideration that most ribosomal protein genes are clustered atstr-stc region,rif region and several other regions, these results strongly suggest that most or all of the contemporary ribosomal proteins must have evolved by repeated gene duplications ofvery few (oronly one) primitive ancestral ribosomal protein gene(s). Thus it is most reasonable to propose that a small ribosome consisting of very few (or only one) ribosomal protein(s) must have existed as a primitive protein-synthesizing apparatus.     

Studies on nitrogen metabolism during somatic embryogenesis in carrot. I. Utilization of α-alanine as a nitrogen source

α-Alanine added to a culture medium was incorporated into cells and/or embryos during rapid cell proliferation and globular embryo formation, in which an active protein synthesis was occurring. After the incorporation into cells, α-alanine seemed to be quickly transformed to glutamic acid by alanine aminotransferase and utilized as a nitrogen source. Alanine aminotransferase activity was observed in cells and/or embryos, although the activity decreased during culture period. Utilization of α-alanine by cultured cells as a nitrogen source was discussed in relation to its stimulative effect on somatic embryogenesis.     

As easy as flipping a switch?

Proteins that behave as switches help to establish the complex molecular logic that is central to biological systems. Aspiring to be nature's equal, researchers have successfully created protein switches of their own design; in particular, numerous and varied zinc-triggered switches have been made. Recent studies in which such switches have been readily identified from combinatorial protein libraries support the notion that proteins are primed to show allosteric behavior and that newly created ligand-binding sites will often be functionally coupled to the original activity of the protein. If true, this notion suggests that switch engineering might be more tractable than previously thought, boding well for the basic science, sensing and biomedical applications for which protein switches hold much promise.     

‘Minority’ as a sociological concept

This article considers how a Muslim cultural discourse of ‘propriety’ has influenced Muslim Arab Sudanese ethnic identity in two locations and time periods in an expanding diaspora. Focusing in particular on women and their embodied practices of whitening and propriety in Egypt in the nineties and the United Kingdom a decade later, I argue that the recent turn towards Muslim expressions of Sudaneseness is a form of resistance to racial labelling. While Sudanese have rejected being labelled ‘black’ in Egypt and in the UK, their renegotiation of a Muslim religious identity in the diaspora nevertheless confirms a racialized Sudanese ethnicity. This study contributes to the rethinking of ethnicity in a transnational space where ethnic nationalism and globalized Islamic discourse intersect with local histories and hierarchies of race and gender.     

Honey as a substitute for formalin?

Formalin has long been the standard fixative for clinical routines worldwide. After the Formaldehyde Standard became law in the US in 1987, as a result of increasing concerns about the potential carcinogenicity of formaldehyde, attempts have been made to find safer alternatives. Alcoholic formalin is a useful fixative, because in addition to fixation, dehydration also is begun. For centuries, honey has been known to be an antibacterial agent with the potential to preserve compounds without harmful effects on its users. We compared the effects of honey fixation with other routine fixatives using conventional histochemical and immunohistochemical staining methods. Our results demonstrated that tissues fixed in either honey or alcoholic formalin and 10% neutral buffered formalin (NBF) have similar histomorphology. Honey fixation showed minor histomorphological differences among the various tissues; however, it did not influence affect correct diagnostic conclusions. Our results suggested that honey can be used as a safe alternative to formalin in histopathology.     

Diffusion as a Ruler: Modeling Kinesin Diffusion as a Length Sensor for Intraflagellar Transport

An important question in cell biology is whether cells are able to measure size, either whole cell size or organelle size. Perhaps cells have an internal chemical representation of size that can be used to precisely regulate growth, or perhaps size is just an accident that emerges due to constraint of nutrients. The eukaryotic flagellum is an ideal model for studying size sensing and control because its linear geometry makes it essentially one-dimensional, greatly simplifying mathematical modeling. The assembly of flagella is regulated by intraflagellar transport (IFT), in which kinesin motors carry cargo adaptors for flagellar proteins along the flagellum and then deposit them at the tip, lengthening the flagellum. The rate at which IFT motors are recruited to begin transport into the flagellum is anticorrelated with the flagellar length, implying some kind of communication between the base and the tip and possibly indicating that cells contain some mechanism for measuring flagellar length. Although it is possible to imagine many complex scenarios in which additional signaling molecules sense length and carry feedback signals to the cell body to control IFT, might the already-known components of the IFT system be sufficient to allow length dependence of IFT? Here we investigate a model in which the anterograde kinesin motors unbind after cargo delivery, diffuse back to the base, and are subsequently reused to power entry of new IFT trains into the flagellum. By mathematically modeling and simulating such a system, we are able to show that the diffusion time of the motors can in principle be sufficient to serve as a proxy for length measurement. We found that the diffusion model can not only achieve a stable steady-state length without the addition of any other signaling molecules or pathways, but also is able to produce the anticorrelation between length and IFT recruitment rate that has been observed in quantitative imaging studies.     

Tongue as a first-line immune organ?

The tongue is an organ strategically situated at the beginning of the gastrointestinal(Gl)system,yet it has been remarkably understudied.Not only there is no separate subspecialty dedicated to the tongue,it is even excluded from 27 human organs/tissues thoroughly archived in the NCBI gene expression database.Almost none of my physician colleagues in Western medicine have paid attention to it,except a few who study tongue cancer.The tongue is typically described as a muscular organ important for taste,mastication,speech and sensation.Other than its development,anatomy/gross structural analyses and taste function(for recent reviews,see Roper and Chaudhari,2017),the human tongue is poorly studied in Western medicine,in particular,in terms of its roles in systemic diseases.In traditional Chinese medicine(TCM),however,the tongue holds a special place.Assessing the“tongue coating”,"tongue body”and morphological features is one of the most critical skills that TCM doctors have relied on for disease diagnoses for thousands of years before the advent of Western Medicine.