Indirect effects in a desert plant community: is competition among annuals more intense under shrub canopies?

An unresolved discussion in contemporary ecology deals with the relative importance of competition along environmental gradients. In deserts, local-scale differences in environmental productivity may be caused by the presence of shrubs, which represent a favorable habitat for annual populations within a nutrient-poor matrix. In this study, we attempted to test the hypothesis that facilitation of desert annuals by shrubs increase the intensity of competition among the annual plants. Such negative indirect effects have so far been ignored in studies about plant-plant interactions. We tested our hypothesis by measuring seedling survival and fecundity of four abundant annual plant species with and without neighbors in open areas and under shrub canopies in a sandy desert area. Our findings did not indicate indirect negative effects of shrubs on their understory annuals. Sensitivity to the presence of neighbors varied between species and surprisingly, the species with the smallest seeds was the only one which was not negatively affected by the presence of neighbors. In contrast to our hypothesis, there was no difference between the habitat types shrubs and openings in absolute and relative competition intensity. Our overall results suggest that negative indirect effects of shrubs are unimportant in determining demographic response of understory annual plants.     

Does large-scale N fertilization have time-delayed effects on insects community structure by changing oak quantity and quality?

The increased atmospheric deposition of nitrogen (N) may indirectly affect herbivorous insects by deposition-induced changes in host quantity and quality. To avoid the “lamp effect” that can occur in small-scale N fertilizations, large-scale N fertilization (ca. 9 ha, 100 kg N ha^?1 year^?1) experiments were performed in a deciduous, broad-leaved, cool temperate forest. The initial responses of mature oak canopy trees (Quercus crispula) and their herbivorous insects to N fertilization were evaluated by measuring the growth and leaf qualities of the trees. The feeding guilds and community structures of the herbivorous insects at control and fertilized sites before (2012) and after (2013–2014) N fertilization were then determined. In 2014, N fertilization enhanced plant growth. In 2013 but not 2014, N fertilization increased N content and decreased the carbon/nitrogen (C/N) ratio in leaves. Despite these changes in plant traits in 2013, N fertilization had no effect on either feeding guilds (chewing herbivory, galler density, and miner density) or community structures (species richness, diversity index, and relative abundance) of herbivorous insects in the same year. However, in 2014, the diversity index decreased significantly, whereas species richness and abundance were unchanged. This suggests that species-specific responses to changes in leaf qualities following N fertilization, in the form of altered insect fecundity, impact the diversity index of herbivorous insects, albeit with a 1-year lag time. Thus, our large-scale N fertilization experiment show the time-delayed bottom-up effects of N fertilization on insect community structure.     

Acetylation of αA-crystallin in the human lens: effects on structure and chaperone function

α-Crystallin is a major protein in the human lens that is perceived to help to maintain the transparency of the lens through its chaperone function. In this study, we demonstrate that many lens proteins including αA-crystallin are acetylated in vivo. We found that K70 and K99 in αA-crystallin and, K92 and K166 in αB-crystallin are acetylated in the human lens. To determine the effect of acetylation on the chaperone function and structural changes, αA-crystallin was acetylated using acetic anhydride. The resulting protein showed strong immunoreactivity against a N(ε)-acetyllysine antibody, which was directly related to the degree of acetylation. When compared to the unmodified protein, the chaperone function of the in vitro acetylated αA-crystallin was higher against three of the four different client proteins tested. Because a lysine (residue 70; K70) in αA-crystallin is acetylated in vivo, we generated a protein with an acetylation mimic, replacing Lys70 with glutamine (K70Q). The K70Q mutant protein showed increased chaperone function against three client proteins compared to the Wt protein but decreased chaperone function against γ-crystallin. The acetylated protein displayed higher surface hydrophobicity and tryptophan fluorescence, had altered secondary and tertiary structures and displayed decreased thermodynamic stability. Together, our data suggest that acetylation of αA-crystallin occurs in the human lens and that it affects the chaperone function of the protein.     

Effects of Brassica nigra and plant–fungi interactions on the arthropod community of Deinandra fasciculata

While invasive plants are widely studied for their effects on native plants, we questioned how plant invasions affect higher trophic levels. We investigated the effects of the invasive plant, Brassica nigra on the multi-trophic arthropod community residing on the native California annual Deinandra fasciculata. In a common garden experiment, we planted D. fasciculata without B. nigra or with one of 45 B. nigra half-sib genetic families. We in turn crossed this B. nigra treatment with the suppression of soil fungi to both test for effects of arbuscular mycorrhizal fungi (AMF) on arthropods, and elucidate the mechanisms of B. nigra’s below ground effects. B. nigra had no effect on D. fasciculata traits (biomass, inflorescence number, root colonization by AMF), arthropod community composition or predator density, but increased herbivore density. While B. nigra families varied 18-fold in size, there was no genetic variation for effects on D. fasciculata or its arthropods. Soil fungi suppression had no effect on D. fasciculata traits, herbivore density or herbivore community composition, but increased predator density and altered predator community composition. While the exact mechanisms of B. nigra effects are unclear, they do not appear to have been mediated by altered plant performance or reductions in root colonization by AMF. Our experiment shows that invasive plants such as B. nigra may affect higher trophic levels even when they do not measurably affect native plant performance.     

How does size and isolation affect patches of steppe-like vegetation on slumping hills in Transylvania,Romania?

The region of Southern Transylvania in Romania contains large expanses of species-rich grassland and mixed farmland. Within these landscapes, clusters of small, steep-sided slumping hills support mosaics of herbaceous vegetation caused by the heterogeneity in temperature and water supply and maintained by mowing or grazing. These are of conservation interest not only for the high species density, but also the relict steppe-like vegetation types especially found on their south-facing slopes. Usually surrounded by more intensively used mesic grassland, these hills can be considered patches of species-rich grassland vegetation. We therefore surveyed the vascular plants in 10 m² plots on the south- and north-facing slopes of 50 hills in 12 clusters in order to investigate the influence of their size and isolation on the species richness and composition of the vegetation. We found that larger hills had higher plot-scale species richness, a greater proportion of competitive species and a lower proportion of species of steppe-like vegetation, but only on their south-facing slopes where the conditions are more extreme. Both large and small hills should be considered as important habitats and potential sources of propagules for plant communities in the surrounding areas.     

Quantifying the effects of nutrient addition on community diversity of serpentine vegetation using parametric entropy of type α

A desirable property of a diversity index is the so-called sum property. For a diversity index that possesses the sum property, such as species richness N, Shannon’s entropy H or Simpson’s index 1/D, the community diversity is decomposable into species-level patterns and the sum of single species diversities gives the pooled diversity of the species collection. In this paper, parametric diversity of type α is used to quantify how fertilizer applied to soil affects the relative contribution of species endemic or preferential to serpentine soils within a garigue plant community in Tuscany (Italy). Soil fertilizer significantly improved the biomass production of the original species pool without any significant colonization by alien species. However, the major biomass increments were experienced by species that are not exclusive to serpentine soils. In this view, the reduced abundance of species endemic or preferential to serpentine soils can be interpreted as a loss of ‘ecological quality’ of the analyzed community.     

A review on the ecological quality status assessment in aquatic systems using community based indicators and ecotoxicological tools: what might be the added value of their combination?

The European Water Framework Directive (WFD) represents a transformation of the guidelines for water quality assessment and monitoring across all EU Member States. At present, it is widely accepted that the WFD requires holistic and multidisciplinary ecological approaches by integrating multiple lines of evidence. Within the scope of the WFD, the scientific community identified clear opportunities to take advantage of an ecotoxicological line of evidence. In this context, ecotoxicological tools, namely biomarkers and bioassays, were proposed to contribute to the integration of the chemical and biological indicators, and thus to provide an overall insight into the quality of a water body. More than one decade after the publication of the WFD, we reviewed the studies that have attempted to integrate ecotoxicological tools in the assessment of surface water bodies. For this purpose, we reviewed studies providing an ecological water status assessment through more conventional community based approaches, in which biomarkers and/or bioassays were also applied to complement the evaluation. Overall, from our review emerges that studies at community level appear suitable for assessing the ecological quality of water bodies, whereas the bioassays/biomarkers are especially useful as early warning systems and to investigate the causes of ecological impairment, allowing a better understanding of the cause–effect-relationships. In this sense, community level responses and biomarkers/bioassays seem to be clearly complementary, reinforcing the need of combining the approaches of different disciplines to achieve the best evaluation of ecosystem communities’ health.     

Biotic resistance on coral reefs? Direct and indirect effects of native predators and competitors on invasive lionfish

Coral Reefs - Biotic resistance is the ability of an ecological community to prevent or limit the establishment or success of non-indigenous species. Native species can confer resistance by...     

The effects of reindeer grazing on the composition and species richness of vegetation in forest–tundra ecotone

We conducted an 8-year exclosure experiment (1999–2006) in a forest–tundra ecotonal area in northwestern Finnish Lapland to study the effects of reindeer grazing on vegetation in habitats of variable productivity and microhabitat structure. The experimental sites included tundra heath, frost heath and riparian habitats, and the two latter habitats were characterized by hummock-hollow ground forms. The total cover of vegetation, cover of willow (Salix spp.), dwarf birch (Betula nana), dwarf shrubs, forbs and grasses (Poaceae spp.) increased in exclosures in all habitats. The increase in the total cover of vegetation and in the covers of willow and dwarf birch tended to be greatest in the least productive tundra heath. Opposing to the increase in the dominant vascular plant groups, the cover and species number of bryophytes decreased in exclosures. We conclude that the effects of reindeer grazing on vegetation composition depend on environmental heterogeneity and the responses vary among plant groups. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Simulation of the effects of Acanthaster planci on the population structure of massive corals in the genus Porites: evidence of population resilience?

Scleractinian corals in the genus Porites are slow growing, can live for centuries, and can attain great size. In these respects they differ from the majority of coral species, which grow faster and live for years to decades. The predatory starfish Acanthaster planci L. feeds on a wide range of coral species including Porites spp., and during outbreaks in its populations, causes high coral mortality and injury over much of the affected reefs. Because they are slow growing and because recent outbreaks of the starfish occurred only 15 years apart, it may be argued that the Porites populations on affected reefs will be sent into a period of prolonged decline. The present study uses a size stage model of the transition matrix type to predict effects of starfish outbreaks of various frequencies on Porites populations. A transition matrix characterizing the mortality and injury caused in different Porites size classes at John Brewer Reef during an outbreak year was determined from field data. Transition matrices for non-outbreak years were constructed on the basis of realistic growth rates and postulated survivorship and recruitment schedules. The medium term (100 years) effects of outbreaks were simulated by alternation of a single iteration of the outbreak matrix with many iterations of each non-outbreak matrix. By varying the interval between simulated outbreaks it was possible to define combinations of growth rate, survivorship and recruitment which were viable for various outbreak intervals. Simulations based on estimates of the initial size frequency distribution, recruitment rates and colony growth rates for the John Brewer Reef population predicted that the population would remain viable in the face of outbreaks every 15 years only if juvenile and adult survivorship were high. However, within the range of colony growth rates known to occur throughout the Great Barrier Reef and at recruitment rates of the same order as those estimated in the field population, it appears that a much wider range of survivorship schedules could lead to parity or even sustained growth in the face of outbreaks recurring at intervals of from 1 to 3 decades. It is suggested that because the key measurable parameters (initial size structure, damage characteristics, recruitment rate and growth rate) are likely to be very patchy at the scale of whole reefs, no general statement concerning the prognosis for Porites would be meaningful. However the model provides a tool by which a standardized evaluation of this type of field data may be made on a reef by reef basis.     

CFTR structure and function: is there a role in the kidney?

Cystic fibrosis (CF) is a lethal autosomal recessive genetic disease caused by mutations in the CF transmembrane conductance regulator (CFTR). Mutations in the CFTR gene may result in a defective protein processing that leads to changes in function and regulation of this chloride channel. Despite of the expression of CFTR in the kidney, patients with CF do not present major renal dysfunction, but it is known that both the urinary excretion of proteins and renal capacity to concentrate and dilute urine are altered in these patients. CFTR mRNA is expressed in all nephron segments of rat and human, and this abundance is more prominent in renal cortex and outer medulla renal areas. CFTR protein was detected in apical surface of both proximal and distal tubules of rat kidney but not in the outer medullary collecting ducts. Studies have demonstrated that CFTR does not only transport Cl⁻ but also ATP. ATP transport by CFTR could be involved in the control of other ion transporters such as Na⁺ (ENaC) and K⁺ (renal outer medullary potassium) channels, especially in TAL and CCD. In the kidney, CFTR also might be involved in the endocytosis of low-molecular-weight proteins by proximal tubules. This review is focused on the CFTR function and structure, its role in the renal physiology, and its modulation by hormones involved in the control of extracellular fluid volume.     

Trophic structure of a neotropical frugivore community: is there competition between birds and bats?

Summary Dietary overlap and competition between frugivorous birds and bats in the Neotropics have been presumed to be low, but comparative data have been lacking. We determined the diets of volant frugivores in an early successional patch of Costa Rican wet forest over a one month period. Ordination of the diet matrix by Reciprocal Averaging revealed that birds and bats tend to feed on different sets of fruits and that diets differed more among bat species than among bird species. However, there was overlap between Scarlet-rumped Tanagers and three Carollia bat species on fruits of several Piper species which comprised most of the diet of these bats. Day/night exclosure experiments on P. friedrichsthalli treetlets provided evidence that birds deplete the amount of ripe fruit available to bats. These results indicate that distantly related taxa may overlap in diet and compete for fruit, despite the apparent adaptation of animal-dispersed plant species for dispersal by particular animal taxa.     

The relative importance of water quality, sediment composition and floating vegetation in explaining the macrobenthic community structure of floodplain lakes (Paraná River, Argentina)

The bottom macroinvertebrates of three floodplain lakes were sampled during a period of 15 months to evaluate the relative importance of water quality and sediment-vegetation variables in explaining patterns of variation in community structure. Water quality variables were associated with hydrological and climatic cycles, while sediment-vegetation variables were related to local environmental conditions. The relative weights of both sets of variables were measured by performing several Partial Canonical Correspondence Analyses (PCCA), followed by a variance partitioning technique. In all lakes, the greatest macrobenthic biomass was observed during the low water phase. During that period, Chironomus and burrowing mayflies (Campsurus) were dominants in a lake having 60% cover of Eichhornia crassipes whereas sphaeriid clams (Pisidium and Eupera), burrowing mayflies, and gastropods (Littoridina) were more abundant in a lake without floating plants. A lake completely covered with E. crassipes had the lowest mean biomass. Biomass decreased sharply during the high water period, and community structure became similar in all lakes, with dominance of Oligochaeta and Ostracoda. The most relevant environmental variables associated with spatial and temporal variations were dissolved oxygen, calcium, clay, floating vegetation, and bottom organic matter. Environmental variables explained about 74% of total variance in community structure, with similar relative contributions of physical and chemical variables of the water (16%), and substrate-vegetation variables (14%). Both sets of variables shared 44% of the explained variance. These results suggest that in the studied lakes, the flood is the major batch process affecting macrobenthos, mainly through changes in water quality. However, local environmental conditions may be as important as water quality in explaining among-lakes variations in macrobenthos at low water periods.     

Habitat structure, trophic structure and ecosystem function: interactive effects in a bromeliad–insect community

Although previous studies have shown that ecosystem functions are affected by either trophic structure or habitat structure, there has been little consideration of their combined effects. Such interactions may be particularly important in systems where habitat and trophic structure covary. I use the aquatic insects in bromeliads to examine the combined effects of trophic structure and habitat structure on a key ecosystem function: detrital processing. In Costa Rican bromeliads, trophic structure naturally covaries with both habitat complexity and habitat size, precluding any observational analysis of interactions between factors. I therefore designed mesocosms that allowed each factor to be manipulated separately. Increases in mesocosm complexity reduced predator (damselfly larva) efficiency, resulting in high detritivore abundances, indirectly increasing detrital processing rates. However, increased complexity also directly reduced the per capita foraging efficiency of the detritivores. Over short time periods, these trends effectively cancelled each other out in terms of detrital processing. Over longer time periods, more complex patterns emerged. Increases in mesocosm size also reduced both predator efficiency and detritivore efficiency, leading to no net effect on detrital processing. In many systems, ecosystem functions may be impacted by strong interactions between trophic structure and habitat structure, cautioning against examining either effect in isolation.     

Nectary structure of Labiatae in relation to their nectar secretion and characteristics in a Mediterranean shrub community — Does flowering time matter?

We studied the interrelation between nectary structure (13 parameters), nectar characteristics (yield, chemical composition), and flower size of 11 Labiatae species in a Mediterranean shrub community near Athens, Greece. We also explored whether the above attributes are affected by the Mediterranean summer drought constraints. Our findings show that among all nectary parameters studied, nectary size and stomatal opening are the most important in (positively) shaping nectar secretion, nectary size being the most meaningful. Nectary structure is correlated to quantity of the nectar secreted, not its quality. Wide flowers bear wide nectaries with large stomatal openings, whereas deep flowers are not related to any nectary size. Corolla size (both length and width) and nectary stomatal opening decrease with flowering time. This applies also to nectary size, nectar volume and sugar content of the perennials (9 species). All above cases of time dependence show that there is a constraint effect of Mediterranean climate on floral and nectary structure, reflected also as a decrease in nectar secretion. Nectary structure in Labiatae is largely shaped by both phylogenetic and climate constraints. On the other hand, although nectar is largely influenced by nectary structure, it is to a large extent ecologically biased, implying that, in addition to phylogeny, there are many other ecological parameters interfering in its secretion such as time within the season, life history, and light requirements.     

Effect of land use on the structure and diversity of riparian vegetation in the Duero river watershed in Michoacán,Mexico

Riparian vegetation performs important ecosystem functions, since it maintains regional biodiversity and provides a range of environmental services. However, anthropogenic activity, land use type, and edge effects are factors that modify the riparian species assemblage and properties. The present study analyzes the influence of adjacent land use on the structure and diversity of riparian vegetation in four hydrographic regions that form the watershed of the river Duero, in the state of Michoacán, Mexico. Using a survey of woody plants of dbh ≥ 2.5 cm in ten different 0.1 ha sites, we found that the average number of stems and individuals was lower under agricultural (AGR) and urban (URB) land use, compared to forested areas (FOR). The proportion of multistemmed plants differs among land uses: this value was greater in AGR than in the FOR and URB categories. This proportion also differed among the four hydrographic regions. The land use type FOR presented the highest alpha and beta diversity, with a high number of native species occurring only in areas defined by this land use. The results indicate that the category FOR plays an important role in the conservation of regional flora and is a possible source of germplasm for restoration programs in sites degraded by human disturbance. This study shows how anthropogenic activities affect riparian vegetation and highlights the importance of further study of this ecosystem to apply sustainable management strategies that are compatible with its conservation.     

Hormetic effects of curcumin: What is the evidence?

Curcumin (diferuloylmethane), a component of the yellow powder prepared from the roots of Curcuma longa or Zingiberaceae (known as turmeric) is not only widely used to color and flavor food but also used as a pharmaceutical agent. Curcumin demonstrates anti-inflammatory, anticarcinogenic, antiaging, and antioxidant activity, as well as efficacy in wound healing. Notably, curcumin is a hormetic agent (hormetin), as it is stimulatory at low doses and inhibitory at high doses. Hormesis by curcumin could be also a particular function at low doses (i.e., antioxidant behavior) and another function at high dose (i.e., induction of autophagy and cell death). Recent findings suggest that curcumin exhibits biphasic dose–responses on cells, with low doses having stronger effects than high doses; examples being activation of the mitogen-activated protein kinase signaling pathway or antioxidant activity. This indicates that many effects induced by curcumin are dependent on dose and some effects might be greater at lower doses, indicative of a hormetic response. Despite the consistent occurrence of hormetic responses of curcumin in a wide range of biomedical models, epidemiological and clinical trials are needed to assess the nature of curcumin’s dose–response in humans. Fortunately, more than one hundred clinical trials with curcumin and curcumin derivatives are ongoing. In this review, we provide the first comprehensive analysis supportive of the hormetic behavior of curcumin and curcumin derivatives.     

Dynamics and trophic interactions of small rodents: landscape or regional effects on spatial variation?

Geographically varying rodent dynamics may be due to specific landscape effects or to regional variation. Two common vole species (Clethrionomys glareolus and Microtus agrestis), their main predators and their impact on some important food items were monitored in Sweden on forest clearcuts in two different landscape types, situated in two different regions with different climatic conditions. Censuses, with 10-16 clearcuts in each landscape and both landscapes in the two regions, were designed to permit analyses of variance of the effects of landscape composition and region on dynamics and species interactions. Region had a far greater influence than landscape on vole numbers, on the proportions of generalist and specialist predators and on the winter browsing of bark of indigenous and experimental woody plants as well on seed consumption in experimental supplies. The findings indicated an influence of the depth and quality of the snow cover on the predation rates by generalist and specialist predators. However, there were also clear signs of food limitation in the snow-rich areas. Such areas had fewer generalist predators, which probably meant less directly density-dependent predation. Thus, lack of high-quality food may put a brake on population growth in climatically harsh regions, permitting increasing populations of specialist predators such as small mustelids to subsequently over-utilise their main prey and potentially cause prolonged low densities. Snow conditions may affect numbers and interactions both within habitats, landscapes and regions. Thus, to more fully understand rodent dynamics, small-scale movements and interactions of individuals in relation to the main large-scale factor(s) of various regions need to be examined.     

The effects of cholesterol and β-sitosterol on the structure of saturated diacylphosphatidylcholine bilayers

The structures of DMPC and DPPC bilayers in unilamellar liposomes, in the presence of 33.3 mol% cholesterol or the plant sterol β-sitosterol, have been studied by small-angle neutron scattering. The bilayer thickness d _L increases in a similar way for both sterols. The repeat distance in multilamellar liposomes, as determined by small-angle X-ray diffraction, is larger in the presence of β-sitosterol than in the presence of cholesterol. We observe that each sterol modifies the interlamellar water layer differently, cholesterol reducing its thickness more efficiently than β-sitosterol, and conclude that cholesterol suppresses bilayer undulations more effectively than β-sitosterol.