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1.
The K+, Na+, and Cl balance and K+ (Rb+) and 36Cl fluxes in U937 cells induced to apoptosis by 0.2 or 1 μM staurosporine were studied using flame emission and radioisotope techniques. It is found that two-thirds of the total decrease in the amount of intracellular osmolytes in apoptotic cells is accounted for by monovalent ions and one-third consists of other intracellular osmolytes. A decrease in the amount of monovalent ions results from a decrease in the amount of K+ and Cl and an increase in the Na+ content. The rate of 36Cl, Rb+ (K+), and 22Na+ equilibration between cells and the medium was found to significantly exceed the rate of apoptotic change in the cellular ion content, which indicates that unidirectional influxes and effluxes during apoptosis may be considered as being in near balance. The drift of the ion flux balance in apoptosis caused by 0.2 μM staurosporine was found to be associated with the increased ouabain-resistant Rb+ (K+) channel influx and insignificantly altered the ouabain-sensitive pump influx. Severe apoptosis induced by 1 μM staurosporine is associated with reduced pump fluxes and slightly changed channel Rb+ (K+) fluxes. In apoptotic cells, the 1.4–1.8-fold decreased Cl level is accompanied by a 1.2–1.6-fold decreased flux.  相似文献   

2.
We present two NMR experiments, (3,2)D HNHA and (3,2)D HNHB, for rapid and accurate measurement of 3J(H N-H alpha) and 3J(N-H beta) coupling constants in polypeptides based on the principle of G-matrix Fourier transform NMR spectroscopy and quantitative J-correlation. These experiments, which facilitate fast acquisition of three-dimensional data with high spectral/digital resolution and chemical shift dispersion, will provide renewed opportunities to utilize them for sequence specific resonance assignments, estimation/characterization of secondary structure with/without prior knowledge of resonance assignments, stereospecific assignment of prochiral groups and 3D structure determination, refinement and validation. Taken together, these experiments have a wide range of applications from structural genomics projects to studying structure and folding in polypeptides.  相似文献   

3.
We studied the possibility of K+ and Cl efflux from tobacco pollen grains during their activation in vitro or on the stigma of a pistil. For this purpose the X-ray microanalysis and spectrofluorometry were applied. We found that the relative content of potassium and chlorine in the microvolume of pollen grain decreases during its hydration and activation on stigma. Efflux of these ions was found both in vivo and in vitro. In model in vitro experiments anion channel inhibitor NPPB ((5-nitro-2-(3-phenylpropylamino) benzoic acid) in the concentration that was blocking pollen germination, reduced Cl efflux; potassium channel inhibitor TEA (tetraethylammonium chloride) partially reduced K+ efflux and lowered the percent of activated cells. Another blocker of potassium channels Ba2+ caused severe decrease in cell volume and blocked the activation. In general, the obtained data demonstrates that the initiation of pollen germination both in vivo and in vitro involves the activation of K+ and Cl release. An important role in these processes is played by NPPB-, TEA- and Ba2+-sensitive plasmalemma ion channels.  相似文献   

4.
The contributions of Ca2+, H+, and Cl in generation of variation potentials (VP) in 3- to 4-week-old pumpkin (Cucurbita pepo L., cv. Mozoleevskaya) plants were assessed. During VP generation, transient alkalinization of the medium around the stem was recorded with a potentiometric method. The pH changes were kinetically similar to the electric potential changes and were apparently due to temporal suppression of the plasma-membrane electrogenic H+ pump. These data and the observed inhibition of VP in the stem zone treated locally with a metabolic inhibitor (NaN3) indicate that the VP generation is related to the reversible suppression of the H+-pump. The anion channel blocker (ethacrynic acid) decelerated significantly the front slope of VP and reduced the VP amplitude. A short-term increase in external Cl concentration around the stem was observed during potential transients representing the VP front slope and the pulses integrated into VP. The removal of Ca2+ from extracellular medium inhibited the VP generation. It is proposed that Ca2+ plays a role in activation of anion channels and in the H+-pump inactivation. The VP generation is probably determined by a complex mechanism, with contributions from passive ion fluxes (Ca2+, Cl) moving along the electrochemical gradients and from changes in the electrogenic pump activity.  相似文献   

5.
Imino 1H–15N residual dipolar couplings (RDCs) provide additional structural information that complements standard 1H–1H NOEs leading to improvements in both the local and global structure of RNAs. Here, we report measurement of imino 1H–1H RDCs for the Iron Responsive Element (IRE) RNA and native E. coli tRNAVal using a BEST-Jcomp-HMQC2 experiment. 1H–1H RDCs are observed between the imino protons in G–U wobble base pairs and between imino protons on neighboring base pairs in both RNAs. These imino 1H–1H RDCs complement standard 1H–15N RDCs because the 1H–1H vectors generally point along the helical axis, roughly perpendicular to 1H–15N RDCs. The use of longitudinal relaxation enhancement increased the signal-to-noise of the spectra by ~3.5-fold over the standard experiment. The ability to measure imino 1H–1H RDCs offers a new restraint, which can be used in NMR domain orientation and structural studies of RNAs. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.  相似文献   

6.
An extension to HN(CO-α/β-N,Cα-J)-TROSY (Permi and Annila in J Biomol NMR 16:221–227, 2000) is proposed that permits the simultaneous determination of the four coupling constants 1 J N′(i)Cα(i), 2 J HN(i)Cα(i), 2 J Cα(i−1)N′(i), and 3 J Cα(i−1)HN(i) in 15N,13C-labeled proteins. Contrasting the original scheme, in which two separate subspectra exhibit the 2 J CαN′ coupling as inphase and antiphase splitting (IPAP), we here record four subspectra that exhibit all combinations of inphase and antiphase splittings possible with respect to both 2 J CαN′ and 1 J N′Cα (DIPAP). Complementary sign patterns in the different spectrum constituents overdetermine the coupling constants which can thus be extracted at higher accuracy than is possible with the original experiment. Fully exploiting data redundance, simultaneous 2D lineshape fitting of the E.COSY multiplet tilts in all four subspectra provides all coupling constants at ultimate precision. Cross-correlation and differential-relaxation effects were taken into account in the evaluation procedure. By applying a four-point Fourier transform, the set of spectra is reversibly interconverted between DIPAP and spin-state representations. Methods are exemplified using proteins of various size.  相似文献   

7.
New 3D HCN quantitative J (QJ) pulse schemes are presented for the precise and accurate measurement of one-bond 15N1/913C1, 15N1/913C6/8, and 15N1/913C2/4 residual dipolar couplings (RDCs) in weakly aligned nucleic acids. The methods employ 1H–13C multiple quantum (MQ) coherence or TROSY-type pulse sequences for optimal resolution and sensitivity. RDCs are obtained from the intensity ratio of H1–C1–N1/9 (MQ-HCN-QJ) or H6/8–C6/8–N1/9 (TROSY-HCN-QJ) correlations in two interleaved 3D NMR spectra, with dephasing intervals of zero (reference spectrum) and 1/(2JNC) (attenuated spectrum). The different types of 15N–13C couplings can be obtained by using either the 3D MQ-HCN-QJ or TROSY-HCN-QJ pulse scheme, with the appropriate setting of the duration of the constant-time 15N evolution period and the offset of two frequency-selective 13C pulses. The methods are demonstrated for a uniformly 13C, 15N-enriched 24-nucleotide stem-loop RNA sequence, helix-35, aligned in the magnetic field using phage Pf1. For measurements of RDCs systematic errors are found to be negligible, and experiments performed on a 1.5 mM helix-35 sample result in an estimated precision of ca. 0.07 Hz for 1DNC, indicating the utility of the measured RDCs in structure validation and refinement. Indeed, for a complete set of 15N1/913C1, 15N1/913C6/8, and 15N1/913C2/4 dipolar couplings obtained for the stem nucleotides, the measured RDCs are in excellent agreement with those predicted for an NMR structure of helix-35, refined using independently measured observables, including 13C–1H, 13C–13C and 1H–1H dipolar couplings.Supplementary material to this paper is available in electronic form at http://dx.doi.org/10.1007/s10858-005-0646-2.  相似文献   

8.
Small lakes in northern latitudes represent a significant source of CH4 to the atmosphere that is predicted to increase with warming in the Arctic. Yet, whole-lake CH4 budgets are lacking as are measurements of δ13C-CH4 and δ2H-CH4. In this study, we quantify spatial variability of diffusive and ebullitive fluxes of CH4 and corresponding δ13C-CH4 and δ2H-CH4 in a small, Arctic lake system with fringing wetland in southwestern Greenland during summer. Net CH4 flux was highly variable, ranging from an average flux of 7 mg CH4 m?2 d?1 in the deep-water zone to 154 mg CH4 m?2 d?1 along the lake margin. Diffusive flux accounted for ~8.5 % of mean net CH4 flux, with plant-mediated and ebullitive flux accounting for the balance of the total net flux. Methane content of emitted ebullition was low (mean ± SD 10 ± 17 %) compared to previous studies from boreal lakes and wetlands. Isotopic composition of net CH4 emissions varied widely throughout the system, with δ13C-CH4 ranging from ?66.2 to ?55.5 ‰, and δ2H-CH4 ranging from ?345 to ?258 ‰. Carbon isotope composition of CH4 in ebullitive flux showed wider variation compared to net flux, ranging from ?69.2 to ?49.2 ‰. Dissolved CH4 concentrations were highest in the sediment and decreased up the water column. Higher concentrations of CH4 in the hypoxic deep water coincided with decreasing dissolved O2 concentrations, while methanotrophic oxidation dominated in the epilimnion based upon decreasing concentrations and increasing values of δ13C-CH4 and δ2H-CH4. The most depleted 13C- and 2H-isotopic values were observed in profundal bottom waters and in subsurface profundal sediments. Based upon paired δ13C and δ2H observations of CH4, acetate fermentation was likely the dominant production pathway throughout the system. However, isotopic ratios of CH4 in deeper sediments were consistent with mixing/transition between CH4 production pathways, indicating a higher contribution of the CO2 reduction pathway. The large spatial variability in fluxes of CH4 and in isotopic composition of CH4 throughout a single lake system indicates that the underlying mechanisms controlling CH4 cycling (production, consumption and transport) are spatially heterogeneous. Net flux along the lake margin dominated whole-lake flux, suggesting the nearshore littoral area dominates CH4 emissions in these systems. Future studies of whole-lake CH4 budgets should consider this significant spatial heterogeneity.  相似文献   

9.
10.
We present a simple method, ARTSY, for extracting 1JNH couplings and 1H–15N RDCs from an interleaved set of two-dimensional 1H–15N TROSY-HSQC spectra, based on the principle of quantitative J correlation. The primary advantage of the ARTSY method over other methods is the ability to measure couplings without scaling peak positions or altering the narrow line widths characteristic of TROSY spectra. Accuracy of the method is demonstrated for the model system GB3. Application to the catalytic core domain of HIV integrase, a 36 kDa homodimer with unfavorable spectral characteristics, demonstrates its practical utility. Precision of the RDC measurement is limited by the signal-to-noise ratio, S/N, achievable in the 2D TROSY-HSQC spectrum, and is approximately given by 30/(S/N) Hz.  相似文献   

11.
In two mountain ecosystems at the Alptal research site in central Switzerland, pulses of 15NO3 and 15NH4 were separately applied to trace deposited inorganic N. One forested and one litter meadow catchment, each approximately 1600 m2, were delimited by trenches in the Gleysols. K15NO3 was applied weekly or fortnightly over one year with a backpack sprayer, thus labelling the atmospheric nitrate deposition. After the sampling and a one-year break, 15NH4Cl was applied as a second one-year pulse, followed by a second sampling campaign. Trees (needles, branches and bole wood), ground vegetation, litter layer and soil (LF, A and B horizon) were sampled at the end of each labelling period. Extractable inorganic N, microbial N, and immobilised soil N were analysed in the LF and A horizons. During the whole labelling period, the runoff water was sampled as well. Most of the added tracer remained in both ecosystems. More NO3 than NH4+ tracer was retained, especially in the forest. The highest recovery was in the soil, mainly in the organic horizon, and in the ground vegetation, especially in the mosses. Event-based runoff analyses showed an immediate response of 15NO3 in runoff, with sharp 15N peaks corresponding to discharge peaks. NO3 leaching showed a clear seasonal pattern, being highest in spring during snowmelt. The high capacity of N retention in these ecosystems leads to the assumption that deposited N accumulates in the soil organic matter, causing a progressive decline of its C:N ratio.  相似文献   

12.
Arginine side-chains are often key for enzyme catalysis, protein–ligand and protein–protein interactions. The importance of arginine stems from the ability of the terminal guanidinium group to form many key interactions, such as hydrogen bonds and salt bridges, as well as its perpetual positive charge. We present here an arginine 13Cζ-detected NMR experiment in which a double-quantum coherence involving the two 15Nη nuclei is evolved during the indirect chemical shift evolution period. As the precession frequency of the double-quantum coherence is insensitive to exchange of the two 15Nη; this new approach is shown to eliminate the previously deleterious line broadenings of 15Nη resonances caused by the partially restricted rotation about the Cζ–Nε bond. Consequently, sharp and well-resolved 15Nη resonances can be observed. The utility of the presented method is demonstrated on the L99A mutant of the 19 kDa protein T4 lysozyme, where the measurement of small chemical shift perturbations, such as one-bond deuterium isotope shifts, of the arginine amine 15Nη nuclei becomes possible using the double-quantum experiment.  相似文献   

13.
The gypsum mineralogy of hair-like, so-called whisker crystals was determined by micro X-ray diffractometry equipped with a focusing X-ray optic and a two-dimensional detector (μ-XRD2). Gypsum whiskers typically form by efflorescence on surfaces that are in contact with water. The delicate whiskers studied here formed within a Messinian evaporite mostly consisting of anhydrite. They project from alabastrine gypsum into former cavities. The gypsum resulted from hydration of anhydrite. Whiskers were finally engulfed by biogenic, native sulphur, which filled the cavities in the course of microbial alteration of the host lithology. The sulphur protected the delicate whisker crystals from destruction, including a period of exposure to weathering on a dumping site of a former mine where the rocks have been sampled. To the best of our knowledge, this is the first report of gypsum whiskers in evaporites. More significantly, this study reveals that μ-XRD2 has great potential for sedimentary petrology, allowing the in situ identification of minute mineral phases that cannot be identified with conventional techniques.  相似文献   

14.
The Na+/Mg2+ exchanger represents the main Mg2+ extrusion mechanism operating in mammalian cells including hepatocytes. We have previously reported that this exchanger, located in the basolateral domain of the hepatocyte, promotes the extrusion of intravesicular trapped Mg2+ for extravesicular Na+ with ratio 1. This electrogenic exchange is supported by the accumulation of tetraphenyl-phosphonium within the vesicles at the time when Mg2+ efflux occurs. In this present study, the role of extra- and intra-vesicular Cl? on the Na+/Mg2+ exchange ratio was investigated. The results reported here suggest that Cl? ions are not required for the Na+ to Mg2+ exchange to occur, but the stoichiometry ratio of the exchanger switches from electrogenic (1Na in + :1 Mg out 2+ ) in the presence of intravesicular Cl? to electroneutral (2Na in + :1 Mg out 2+ ) in their absence. In basolateral liver plasma membrane vesicles loaded with MgCl2 labeled with 36Cl?, a small but significant Cl? efflux (~30 nmol Cl?/mg protein/1 min) is observed following addition of NaCl or Na-isethionate to the extravesicular medium. Both Cl? and Mg2+ effluxes are inhibited by imipramine but not by amiloride, DIDS, niflumic acid, bumetanide, or furosemide. In vesicles loaded with Mg-gluconate and stimulated by Na-isethionate, an electroneutral Mg2+ extrusion is observed. Taken together, these results suggest that the Na+/Mg2+ exchanger can operate irrespective of the absence or the presence of Cl? in the extracellular or intracellular environment. Changes in trans-cellular Cl? content, however, can affect the modus operandi of the Na+/Mg2+ exchanger, and consequently impact "cellular" Na+ and Mg2+ homeostasis as well as the hepatocyte membrane potential.  相似文献   

15.
In a previous study performed on zona fasciculata (ZF) cells isolated from calf adrenal glands, we identified an ACTH-induced Cl current involved in cell membrane depolarization. In the present work, we describe a volume-sensitive Cl current and compare it with the ACTH-activated Cl current. Experiments were performed using the whole-cell patch-clamp recording method, video microscopy and cortisol-secretion measurements. In current-clamp experiments, hypotonic solutions induced a membrane depolarization to −22 mV. This depolarization, correlated with an increase in the membrane conductance, was sensitive to different Cl channel inhibitors. In voltage-clamp experiments, hypotonic solution induced a membrane current that slowly decayed and reversed at −21 mV. This ionic current displayed no time dependence and showed a slight outward rectification. It was blocked to variable extent by different conventional Cl-channel inhibitors. Under hypotonic conditions, membrane depolarizations were preceded by an increase in cell volume that was not detected under ACTH stimulation. It was concluded that hypotonic solution induced cell swelling, which activated a Cl current involved in membrane depolarization. Although cell volume change was not observed in the presence of ACTH, biophysical properties and pharmacological profile of the volume-sensitive Cl current present obvious similarities with the ACTH-activated Cl current. As compared to ACTH, hypotonic solutions failed to trigger cortisol production that was weakly stimulated in the presence of high-K+ solution. This shows that in ZF cells, membrane depolarization is not a sufficient condition to fully activate secretory activities.This revised version was published online in August 2005 with a corrected cover date.  相似文献   

16.
Glioblastoma multiforme (GBM) is paradigmatic for the investigation of cancer stem cells (CSC) in solid tumors. The CSC hypothesis implies that tumors are maintained by a rare subpopulation of CSC that gives rise to rapidly proliferating progenitor cells. Although the presence of progenitor cells is crucial for the CSC hypothesis, progenitor cells derived from GBM CSC are yet uncharacterized. We analyzed human CD133+ CSC lines that were directly derived from CD133+ primary astrocytic GBM. In these CSC lines, CD133+/telomerasehigh CSC give rise to non-tumorigenic, CD133/telomeraselow progenitor cells. The proliferation of the progenitor cell population results in significant telomere shortening as compared to the CD133+ compartment comprising CSC. The average difference in telomere length as determined by a modified multi-color flow fluorescent in situ hybridization was 320 bp corresponding to 4–8 cell divisions. Taken together, we demonstrate that CD133+ primary astrocytic GBM comprise proliferating, CD133/telomeraselow progenitor cell population characterized by low telomerase activity and shortened telomeres as compared to CSC.  相似文献   

17.
18.
A modified Lorentzian distribution function is used to model peaks in two-dimensional (2D) 1H–13C heteronuclear single quantum coherence (HSQC) nuclear magnetic resonance (NMR) spectra. The model fit is used to determine accurate chemical shifts from genuine signals in complex metabolite mixtures such as blood. The algorithm can be used to extract features from a set of spectra from different samples for exploratory metabolomics. First a reference spectrum is created in which the peak intensities are given by the median value over all samples at each point in the 2D spectra so that 1H–13C correlations in any spectra are accounted for. The mathematical model provides a footprint for each peak in the reference spectrum, which can be used to bin the 1H–13C correlations in each HSQC spectrum. The binned intensities are then used as variables in multivariate analyses and those found to be discriminatory are rapidly identified by cross referencing the chemical shifts of the bins with a database of 13C and 1H chemical shift correlations from known metabolites.  相似文献   

19.
A labeling scheme is introduced that facilitates the measurement of accurate 13Cβ chemical shifts of invisible, excited states of proteins by relaxation dispersion NMR spectroscopy. The approach makes use of protein over-expression in a strain of E. coli in which the TCA cycle enzyme succinate dehydrogenase is knocked out, leading to the production of samples with high levels of 13C enrichment (30–40%) at Cβ side-chain carbon positions for 15 of the amino acids with little 13C label at positions one bond removed (≈5%). A pair of samples are produced using [1-13C]-glucose/NaH12CO3 or [2-13C]-glucose as carbon sources with isolated and enriched (>30%) 13Cβ positions for 11 and 4 residues, respectively. The efficacy of the labeling procedure is established by NMR spectroscopy. The utility of such samples for measurement of 13Cβ chemical shifts of invisible, excited states in exchange with visible, ground conformations is confirmed by relaxation dispersion studies of a protein–ligand binding exchange reaction in which the extracted chemical shift differences from dispersion profiles compare favorably with those obtained directly from measurements on ligand free and fully bound protein samples.  相似文献   

20.
We present a highly sensitive pulse sequence, carbonyl carbon label selective 1H–15N HSQC (CCLS-HSQC) for the detection of signals from 1H–15N units involved in 13C′–15N linkages. The CCLS-HSQC pulse sequence utilizes a modified 15N CT evolution period equal to 1/( ) (∼33 ms) to select for 13C′–15N pairs. By collecting CCLS-HSQC and HNCO data for two proteins (8 kDa ubiquitin and 20 kDa HscB) at various temperatures (5–40°C) in order to vary correlation times, we demonstrate the superiority of the CCLS-HSQC pulse sequence for proteins with long correlation times (i.e. higher molecular weight). We then show that the CCLS-HSQC experiment yields assignments in the case of a 41 kDa protein incorporating pairs of 15N- and 13C′-labeled amino acids, where a TROSY 2D-HN(CO) had failed. Although the approach requires that the 1H–15N HSQC cross peaks be observable, it does not require deuteration of the protein. The method is suitable for larger proteins and is less affected by conformational exchange than HNCO experiments, which require a longer period of transverse 15N magnetization. The method also is tolerant to the partial loss of signal from isotopic dilution (scrambling). This approach will be applicable to families of proteins that have been resistant to NMR structural and dynamic analysis, such as large enzymes, and partially folded or unfolded proteins.  相似文献   

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