Depth distribution of microbial diversity in Mono Lake,a meromictic soda lake in California

We analyzed the variation with depth in the composition of members of the domain Bacteria in samples from alkaline, hypersaline, and currently meromictic Mono Lake in California. DNA samples were collected from the mixolimnion (2 m), the base of the oxycline (17.5 m), the upper chemocline (23 m), and the monimolimnion (35 m). Composition was assessed by sequencing randomly selected cloned fragments of 16S rRNA genes retrieved from the DNA samples. Most of the 212 sequences retrieved from the samples fell into five major lineages of the domain BACTERIA: alpha- and gamma-Proteobacteria (6 and 10%, respectively), Cytophaga-Flexibacter-Bacteroides (19%), high-G+C-content gram-positive organisms (Actinobacteria; 25%), and low-G+C-content gram-positive organisms (Bacillus and Clostridium; 19%). Twelve percent were identified as chloroplasts. The remaining 9% represented beta- and delta-Proteobacteria, Verrucomicrobiales, and candidate divisions. Mixolimnion and oxycline samples had low microbial diversity, with only 9 and 12 distinct phylotypes, respectively, whereas chemocline and monimolimnion samples were more diverse, containing 27 and 25 phylotypes, respectively. The compositions of microbial assemblages from the mixolimnion and oxycline were not significantly different from each other (P = 0.314 and 0.877), but they were significantly different from those of chemocline and monimolimnion assemblages (P < 0.001), and the compositions of chemocline and monimolimnion assemblages were not significantly different from each other (P = 0.006 and 0.124). The populations of sequences retrieved from the mixolimnion and oxycline samples were dominated by sequences related to high-G+C-content gram-positive bacteria (49 and 63%, respectively) distributed in only three distinct phylotypes, while the population of sequences retrieved from the monimolimnion sample was dominated (52%) by sequences related to low-G+C-content gram-positive bacteria distributed in 12 distinct phylotypes. Twelve and 28% of the sequences retrieved from the chemocline sample were also found in the mixolimnion and monimolimnion samples, respectively. None of the sequences retrieved from the monimolimnion sample were found in the mixolimnion or oxycline samples. Elevated diversity in anoxic bottom water samples relative to oxic surface water samples suggests a greater opportunity for niche differentiation in bottom versus surface waters of this lake.     

Vertical distribution of major sulfate-reducing bacteria in a shallow eutrophic meromictic lake

The vertical distribution of sulfate-reducing bacteria was investigated in a shallow, eutrophic, meromictic lake, Lake Harutori, located in a residential area of Kushiro, Japan. A steep chemocline, characterized by gradients of oxygen, sulfide and salinity, was found at a depth of 3.5–4.0 m. The sulfide concentration at the bottom of the lake was high (up to a concentration of 10.7 mM). Clone libraries were constructed using the aprA gene, which encodes adenosine-5′-phosphosulfate reductase subunit A, in order to monitor sulfate-reducing bacteria. In the aprA clone libraries, the most abundant sequences were those from the Desulfosarcina–Desulfococcus (DSS) group. A primer set for a DSS group-specific 16S rRNA gene was used to construct another clone library, analysis of which revealed that the uncultured group of sulfate-reducing bacteria, SEEP SRB-1, accounted for nearly half of the obtained sequences. Quantification of the major bacterial groups by catalyzed reporter deposition-fluorescence in situ hybridization demonstrated that the DSS group accounted for 3.2–4.8% of the total bacterial community below the chemocline. The results suggested that the DSS group was one of the major groups of sulfate-reducing bacteria and that these presumably metabolically versatile bacteria might play an important role in sulfur cycling in Lake Harutori.     

An integrative study of a meromictic lake ecosystem in Antarctica

In nature, the complexity and structure of microbial communities varies widely, ranging from a few species to thousands of species, and from highly structured to highly unstructured communities. Here, we describe the identity and functional capacity of microbial populations within distinct layers of a pristine, marine-derived, meromictic (stratified) lake (Ace Lake) in Antarctica. Nine million open reading frames were analyzed, representing microbial samples taken from six depths of the lake size fractionated on sequential 3.0, 0.8 and 0.1 μm filters, and including metaproteome data from matching 0.1 μm filters. We determine how the interactions of members of this highly structured and moderately complex community define the biogeochemical fluxes throughout the entire lake. Our view is that the health of this delicate ecosystem is dictated by the effects of the polar light cycle on the dominant role of green sulfur bacteria in primary production and nutrient cycling, and the influence of viruses/phage and phage resistance on the cooperation between members of the microbial community right throughout the lake. To test our assertions, and develop a framework applicable to other microbially driven ecosystems, we developed a mathematical model that describes how cooperation within a microbial system is impacted by periodic fluctuations in environmental parameters on key populations of microorganisms. Our study reveals a mutualistic structure within the microbial community throughout the lake that has arisen as the result of mechanistic interactions between the physico-chemical parameters and the selection of individual members of the community. By exhaustively describing and modelling interactions in Ace Lake, we have developed an approach that may be applicable to learning how environmental perturbations affect the microbial dynamics in more complex aquatic systems.     

Vertical distribution of planktonic rotifers in a karstic meromictic lake

Vertical distribution of planktonic rotifers is described in relation to temperature and oxygen in Lake La Cruz, a single-doline, closed karstic lake (121 m diameter and 25 m maximum depth) which shows iron meromixis. Samples were taken by peristaltic pumping at 10 cm depth intervals in the oxycline zone from June 1987 to September 1988. A model of rotifer vertical structure in stratified lakes is proposed. Rotifers concentrate their populations at the depths with intense gradients. As stratification develops some rotifer populations show a downward migration following the thermocline and some others show an upward migration following the oxycline. The production-respiration balance in the lake, and so the position of the oxycline with respect to the thermocline and the layer of maximum production, depends on meteorological conditions. A shift in the dominance of congeneric or related species can occur in consecutive years. In Lake La Cruz, mixing conditions and subterranean inflow in spring were much more intense in 1988 than 1987, and the distance between production and decomposition depths was smaller in 1988. Anuraeopsis miraclei, an oxycline-bound species with high abundance in 1987, was displaced by A. fissa in 1988. A. fissa, which was a metalimnetic species during early summer, reached peak densities (3 × 10⁴ ind l^–1) at the oxycline, equaling the abundance of A. miraclei the preceeding year.     

Iodine distribution in an antarctic meromictic saline lake

Water samples collected from a range of depths in Ace Lake in the Vestfold Hills, Antarctica were analysed for iodine species by a polarographic method. Contrary to thermodynamic prediction, iodide was the predominant species in oxic surface waters. Total dissolved iodine was closely correlated with bacterial density down the water column. This observation and other data are used to postulate a scheme for the biological mediation of iodine distribution in the lake.     

Cold-active halophilic bacteria from the ice-sealed Lake Vida,Antarctica

Lake Vida is a large, permanently ice-covered lake in the Victoria Valley of the McMurdo Dry Valleys, Antarctica and is unique among Dry Valley lakes because it is ice-sealed, with an ice-cover of nearly 19 m. Enrichment cultures of melt-water from Lake Vida 15.9 m ice yielded five pure cultures of aerobic, heterotrophic bacteria. Of these, one strain grew at −8°C and the four others at −4°C. All isolates were either halotolerant or halophilic, with two strains capable of growth at 15% NaCl. Phylogenetic analysis revealed the Lake Vida isolates to be Gammaproteobacteria, related to species of Psychrobacter and Marinobacter. This is the first report of pure cultures of bacteria from Lake Vida, and the isolates displayed a phenotype consistent with life in a cold hypersaline environment.     

Photosynthetic bacteria in meromictic lakes and stratified fjords of the Vestfold Hills,Antarctica

Thirteen meromictic lakes and two permanently stratified fjords in the Vestfold Hills, Antarctica, were surveyed in 1983 for photosynthetic bacteria. Burton Lake and Ellis Fjord were sampled throughout the year to determine seasonal variations. Physical and chemical parameters were recorded and related to the species present. The dominant species in waters with salinities of 100.7 g kg^–1 were Chlorobium vibrioforme and Chlorobium limicola with populations at the O₂–H₂S interface in the range 0.3 to 6.7 × 10⁶ ml^–1. Neither of these species was found at higher salinities. Thiocapsa roseopersicina and a Chromatium sp. were found in low numbers (< 10⁵ ml^–1) in most of the same waters as the Chlorobium spp. These bacterial phototrophs developed in a narrow band below the O₂–H₂S interface where both light and H₂S were available. Very low numbers (< 10² ml^–1) of Rhodopseudomonas palustris were found in both oxic and anoxic waters having salinity 148 g kg^–1. The dominance of the Chlorobium spp. is ascribed to their more efficient maintenance metabolism during the darkness, their faster growth at low light intensities (< 1 µE m^–2 s^–1) and the lack of selective filtering of incident light. The Chlorobium spp. grew well at –2 °C, but not –5°C in hypersaline waters. The concentration of H₂S had no apparent effect on the development of the bacterial flora. Viable cells were found to depths of 100 m in Ellis Fjord indicating that viability in total darkness could have been maintained for periods of the order of 1700 days.     

Trophic relationships between bacteria and protozoa in the hypolimnion of a meromictic mesostrophic lake

The development of ciliated protozoan biomass in the hypolimnion of Piburger See, a small subalpine lake, was demonstrated to depend mainly on two factors. Firstly, the availability of oxygen or nitrate as electron acceptors determines the depth profiles of ciliates. Large quantities of ciliates and even maximum numbers were found at depths where no oxygen could be detected. If nitrate also disappeared during the summer stagnation period, the biomass of protozoa was strongly reduced. Nitrite peaks generally corresponded with ciliate peaks. An extension of Finlay's findings (dissimilatory nitrate reductase within the inner mitochondrial membrane) to other ciliate groups is hypothesized.Secondly, the biomass development of hypolimnetic ciliates was strongly correlated with the bacterial biomass registered approx. 2 weeks before (r² = 0.891, n = 14). The biomass of bacteria, on the other hand, was dependent upon the sedimentation rate of organic carbon (r² = 0.850, n = 15), if a time lag of approx. 2 weeks was taken into account. Therefore a total time lag of approx. 4 weeks was assumed to take place between sedimentation of organic substance and the corresponding increase in ciliate biomass (r² = 0.853, n = 14). Bacteria were shown to be an important intermediate link in the food chain of the hypolimnion. They appear to represent the principal energy source for pelagic ciliates. Sedimentation of organic carbon, nitrogen and phosphorus is the driving force for the establishment of the hypolimnetic microbial community.     

Methane production in meromictic Ace Lake,Antarctica

Methane occurred in the monimolimnion, at depths greater than 11 m, of an antarctic meromictic lake, Ace Lake (depth 24.7 m). Although the water of the lake was of approximate marine salinity, bottom waters were depleted in sulfate (less than 1 mmol 1^–1). The temperature of the bottom waters of the lake were constantly between 1 °C and 2 °C. Rates of methanogenesis from ¹⁴C-labelled precursors (bicarbonate, formate and acetate) were determined in time course experiments with the detection of ¹⁴CH₄ produced by a gas chromatography-gas proportional counting system. Rates of ¹⁴CH₄ production were difficult to determine as the reactions were always near our limit of detection.Reliable determinations of rates of methanogenesis at some depths using some precursors were obtained, the fastest rate being 2.5 µmol kg^–1 day^–1 at depth 20 m. Assuming constant rates of methanogenesis with time, this would equate to a turnover of methane in the lake every two years.The slow rate of methanogenesis suggests that the methanogens in Ace Lake may be working at well below their optimum temperature although definitive statements regarding the presence of psychrophilic methanogens in this antarctic lake must await isolation attempts or longer field studies using alternative methodologies.     

Grazing of the copepod Diaptomus connexus on purple sulphur bacteria in a meromictic salt lake

A meromictic lake ecosystem (Mahoney Lake, BC, Canada) was investigated to elucidate the significance of chemocline bacteria in the total carbon cycle under natural conditions. In this lake, primary production by oxygenic phototrophs was insufficient to support the observed net secondary production of the calanoid copepod Diaptomus connexus and the rotifer Brachionus plicatilis , indicating the presence of additional food sources for consumers. Mahoney Lake harbours the densest population of phototrophic sulphur bacteria ever reported in a natural body of water. This layer is located at the interface between oxic and anoxic water layers and is dominated by the purple sulphur bacterium Amoebobacter purpureus . The transfer rates of A. purpureus carbon to D. connexus determined in stratified mesocosms were very low (0.71 ngC copepod⁻¹ day⁻¹) and accounted for only 0.6% of the observed net biomass increase in the zooplankter. Stable stratification within the mesocosms prevented an upwelling of A. purpureus into the oxic part. However, measurements of carbon fluxes, infrared fluorescence microscopy and stable carbon analysis provided cumulative evidence that, under in situ conditions, the cell carbon of purple sulphur bacteria indeed enters the aerobic food chain via the grazing activity of D. connexus . Based on a two-source isotopic mixing model, A. purpureus represents at least 75–85% of the diet of D . connexus . Autumnal upwelling into oxic water layers and aggregation of A . purpureus cells appear to be the main factors determining the high carbon flux from purple sulphur bacteria to zooplankton under natural conditions, and most probably also play a key role in other aquatic ecosystems. Through this pathway, over 53% of the reduced organic matter of purple sulphur bacteria trapped in anoxic bottom waters is returned to the oxic realm.     

Proteolytic anaerobic bacteria from lake sediments of Antarctica

Amongst twenty five proteolytic bacteria isolated from lake sediment samples of Antarctica, six isolates were selected based on SDS PAGE protein profile and zone of hydrolysis on casein agar at 10 degrees C. Most of the cultures were rod shaped and motile with two showing terminal bulging spores. Isolates grew between 5 degrees C to 37 degrees C and protease was induced in the late log, stationary or death phase. Isolate SPA-3 grew maximally at 10 degrees C and SPA-6 at 37 degrees C while others preferred 20 degrees C-30 degrees C for growth. The growth and protease production on casein, skimmed milk, bovine serum albumin and gelatin varied with the isolates. Acetate was the dominant volatile fatty acid (24-66% of total VFA) produced during hydrolysis of protein substrate.     

Consequences of redox conditions on the distribution of cations in a meromictic oligotrophic lake

The cations Ca, Mg, Zn, Na, K, Mn and Fe were measured during the year 1977 in the mixolimnion and in the monimolimnion of lake Pavin. The great difference between the residence time for Ca, Mg, Na, K (15 years) and for Mn and Fe (> 90 years) is due to the redox reactions in the chemocline. The overturn conditions and their influence on cation accumulation are studied.     

Physiological diversity and adaptations of aerobic heterotrophic bacteria from different depths of hypersaline, heliothermal and meromictic Ekho Lake (East Antarctica)

The hypersaline and meromictic Ekho Lake provides, with increasing depth, a large variety of different habitats to microorganisms. Out of 250 isolates, 51 bacterial strains were studied for physiological adaptations to their environment (i.e. to the depth layer from which they were obtained). Their salinity and temperature tolerance ranges for growth reflected the very conditions that were measured in the samples of their origin collected in the summer of 1989/1990. These observations indicated that the isolates are capable of growth at the depth of their origin and that they conceivably were endemics. Additionally, a separation of physiologically different populations of heterotrophic bacteria was indicated with respect to the utilization of C-compounds: the uppermost 4 m of the oxylimnion (with frequent water turnover and more extreme temperature conditions) supported primarily sugar-utilizing and halotolerant !-Proteobacteria and Gram-positives. The deeper, hypersaline and heliothermally heated layers (>4-24 m) had more moderately halophilic and amino acid-utilizing %-Proteobacteria possibly of marine origin.     

Bacterial population dynamics in a meromictic lake.

Polyclonal antibodies against nine different bacteria isolated from Lake Saelenvannet in western Norway were produced, and the population dynamics of these strains in the lake were monitored through two spring seasons by immunofluorescence staining. The total counts of bacteria varied over time and space from 1.5 x 10(6) to 1.5 x 10(7) cells ml-1. The counts of specific bacteria were in the range of 10(3) to 10(4) cells ml-1 or less; in sum, they generally made up less than 1% of the bacterial community. Some populations showed significant changes in abundance, with blooms lasting 1 to 3 weeks. The rate of change (increase and decrease) in abundance during blooms was estimated to be 0.2 to 0.6 day-1. The average virus-to-bacteria ratio was 50, and there was a significant correlation between the abundances of virus and bacteria. Both protozoan grazing and lytic virus infection were assessed as possible mechanisms driving the variations in bacterial population density.     

Nutrient-phytoplankton relationships in a tropical meromictic soda lake

Seasonal variation through one year in total nitrogen (TN), total phosphorus (TP), phytoplankton biomass, phytoplankton species composition and other environmental factors were examined in Lake Sonachi, a tropical meromictic soda lake. Mean concentrations of TN and TP were 11 000 µg N l^-1 and 100 µg P l^-1, respectively. Maximum concentrations of TN and TP occurred in the monimolimnion. Phytoplankton biomass ranged from 350 to 1260 mg m^-3. Synechococcus bacillaris, a small coccoid cyanophyte, dominated the phytoplankton. The mean chlorophyll a concentration of 37 mg · m^-3 was a modest value when compared with those of other tropical soda lakes. High TN:TP ratios indicated phosphorus limitation in the lake.     

Phylogenetic diversity of archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France)

The compositions of archaeal and bacterial populations at different depths (60 m [mixolimnion-chemocline interface], 70 m [chemocline-subchemocline interface], 90 m, and 92 m [the water-sediment interface]) in the anoxic zone of the water column in Lake Pavin, a freshwater permanently stratified mountain lake in France, were determined. Phylogenetic trees were constructed from sequences to assess archaeal and bacterial diversity at the four sites.     

Temporal and vertical distribution of planktonic rotifers in a meromictic crater lake,Lake Nyahirya (Western Uganda)

Quantitative zooplankton sampling was carried out biweekly during 16 months in Lake Nyahirya, a Western Uganda crater lake. Six out of 24 rotifer species recorded from the lake were quantitatively important (Horaella brehmi, Brachionus angularis, B. caudatus, Keratella tropica, Filinia longiseta and F. opoliensis, and three others were common (Brachionus falcatus, Asplanchna sieboldi and Conochiloides natans). Rotifer peaks were correlated with rainy periods and relatively clear water, which coincide with the European spring and autumn. All species were able to deal with hypoxic conditions. A clear niche separation can be observed between different genera and between species of the same genus. The population dynamics of the rotifers seem to be ruled by repeated irregular environmental fluctuations. Rainfall appears to be a primary steering factor.