Structure and formation properties of the haloalkaliphilic community of Lake Khilganta

The structural features of a cyanobacterial mat from Lake Khilganta (Southeastern Transbaikal Region) developing at different values of salinity and pH were determined based on our long-term investigation of the natural community, as well as results obtained during experimentation with its laboratory analogue. At water mineralization of 40–50 g/l, Microcoleus chthonoplastes and Phormidium molle play a key role in the formation of the cyanobacterial mat. As water mineralization increases, the diversity of cyanobacteria in the natural mat increases as well, reaches its maximum at 80 g/l NaCl, and decreases at 100 g/l. In the laboratory community, Nodularia sp. prevailed. It was able to form matlike structures within a broad pH range and at a salinity of up to 50 g/l NaCl. As the water mineralization level increased up to 100 g/l or higher, a replacement of the dominant complexes occurred both in the laboratory and natural communities: cyanobacterial species were substituted with green algae.     

Spatial Heterogeneity and Soil Nitrogen Dynamics in a Burned Black Spruce Forest Stand: Distinct Controls at Different Scales

We evaluated spatial patterns of soil N and C mineralization, microbial community composition (phospholipid fatty acids), and local site characteristics (plant/forest floor cover, soil pH, soil %C and %N) in a 0.25-ha burned black spruce forest stand in interior Alaska. Results indicated that factors governing soil N and C mineralization varied at two different scales. In situ net N mineralization was autocorrelated with microbial community composition at relatively broad scales (∼ ∼8 m) and with local site characteristics (`site' axis 1 of non-metric scaling ordination) at relatively fine scales (2–4 m). At the scale of the individual core, soil moisture was the best predictor of in situ net N mineralization and laboratory C mineralization, explaining between 47 and 67% of the variation (p < 0.001). Ordination of microbial lipid data showed that bacteria were more common in severely burned microsites, whereas fungi were more common in low fire severity microsites. We conclude that C and N mineralization rates in this burned black spruce stand were related to different variables depending on the scale of analysis, suggesting the importance of considering multiple scales of variability among key drivers of C and N transformations.     

Similar Bacterial Community Composition in Acidic Mining Lakes with Different pH and Lake Chemistry

As extreme environmental conditions strongly affect bacterial community composition (BCC), we examined whether differences in pH—even at low pH—and in iron and sulfate concentrations lead to changes in BCC of acidic mining lakes. Thereby, we tested the following hypotheses: (1) diversity of the bacterial community in acidic lakes decreases with reducing pH, (2) BCC differs between epilimnion and hypolimnion, and (3) BCC in extremely acidic environments does not vary much over time. Therefore, we investigated the BCC of three acidic lakes with different pH values (2.3, 2.7, and 3.2) by denaturing gradient gel electrophoresis (DGGE) and subsequent sequencing of DGGE bands as well as catalyzed reporter deposition-FISH (CARD-FISH). BCC did not significantly vary among the studied lakes nor differ much between water layers. In contrast, BCC significantly changed over time, which is contradictory to our hypotheses. Bacterial communities were dominated by Alpha-, Beta-, and Gammaproteobacteria, whereas Actino- and Acidobacteria rarely occurred. Cell numbers of both free and attached bacteria were positively related to DOC concentration. Overall, low pH and extreme chemical conditions of the studied lakes led to similar assemblages of bacteria with pronounced temporal differences. This notion indicates that temporal changes in environmental conditions including food web structure also affect unique communities of bacteria thriving at low pH.     

In situ annual nitrogen mineralization predicted by simple soil properties and short-period field incubation

A typical method to determine nitrogen mineralization is year-round field incubation of undisturbed soil cores. As this technique is very laborious, the aim of the present study was to establish less time consuming methods to assess the annual N mineralization. Options considered were reducing the period of subsequent field incubations to less than a full year, and prediction using simple (direct) soil measurements. In situ annual N mineralization was measured in 74 semi-natural, unfertilized sites under year-round vegetation cover by sequential incubation of undisturbed soil cores during 2 full years. The sites classify into 14 very different plant community types and encompass a wide range of edaphic conditions. A high correlation with the annual N mineralization was maintained when sequential incubations were restricted to the period early March–mid August (r=0.98). Shorter periods may also be used, as long as they lie within the period early March–mid August and cover 3 months at least. The average annual N mineralization could be predicted accurately using the soil mineral nitrogen pool (N_min), moisture content and pH as the predictor variables. In a multiple regression model based on log-transformed values, the R ² was 0.835. Samples (preferably bulked) are best taken in early March, just before the start of the growing season. Higher N_min contents (moisture and pH assumed constant) indicated higher annual N mineralization rates. Higher moisture contents (at constant N_min and pH) generally indicated lower annual rates. Soil pH showed a quadratic relation (at fixed N_min and moisture) with maximum annual mineralization occurring at a pH-CaCl₂ value of 5.5–5.6. N_min appeared to be the most important predictor variable. Even within plant community types (with a reduced range of conditions), its relationship with the annual N mineralization persisted. Frequently studied factors, such as total soil N, organic matter content, C:N ratio, soluble organic N and particle size composition, only showed low and insignificant correlations, although stronger relationships have sometimes been reported. It is assumed this discrepancy is caused by the smaller range of conditions usually studied. This revised version was published online in June 2006 with corrections to the Cover Date.     

Diversity and structure of macrozoobenthic communities in the highly mineralized Khara River (territory adjacent to Lake Elton)

The present paper deals with the results of the first study (April and August, 2006–2007) of the taxonomic composition of macrozoobenthos in the highly mineralized Khara River. The study revealed 35 species and taxa of the rank above species. Data were obtained on the spatial distribution of the species composition dynamics and on the quantitative development of the macrozoobenthic community. The dependence of the structure of bottom communities on the parameters of the river’s trophic status, biotopic diversity, and changes in hydrochemical parameters was determined. The environmental factors (total mineralization, ionic composition, pH, oxygen content, water temperature, overgrowth by macrophytes) influencing structural changes in macrozoobenthic community were determined. It is shown that diversity, number, and biomass of halotolerant macrozoobenthic communities increase with a rise in water mineralization from 6.9 to 14 mg/L. A new halophilic chironomid species of the family Chironominae, Tanytarsus kharaensis Zorina et Zinchenko, has been found.     

Carbon Mineralization and Labile Organic Carbon Pools in the Sandy Soils of a North Florida Watershed

The large pool of actively cycling carbon (C) held in soils is susceptible to release due to changes in landuse, management, or climate. Yet, the amount and distribution of potentially mineralizable C present in soils of various types and the method by which this soil C fraction can best be quantified, are not well established. The distribution of total organic C (TOC), extractable C pools (hot-water-extractable and acid-hydrolyzable), and in vitro mineralizable C in 138 surface soils across a north Florida watershed was found to be quite heterogeneous. Thus, these C quality parameters could not statistically distinguish the eight landuses or four major soil orders represented. Only wetland and upland forest soils, with the largest and smallest C pool size, respectively, were consistently different from the soils of other landuse types. Variations in potential C mineralization were best explained by TOC (62%) and hot-water-extractable C (59%), whereas acid-hydrolyzable C (32%) and clay content (35%) were generally not adequate indicators of C bioavailability. Within certain landuse and soil orders (Alfisol, Wetland and Rangeland, all with >3% clay content), however, C mineralization and clay content were directly linearly correlated, indicating a possible stimulatory effect of clay on microbial processing of C. Generally, the sandy nature of these surface soils imparted a lack of protection against C mineralization and likely resulted in the lack of landuse/soil order differences in the soil C pools. If a single parameter is to be chosen to quantify the potential for soil C mineralization in southeastern U.S. coastal plain soils, we recommend TOC as the most efficient soil variable to measure. Author Contributions  Conceived of or designed study: Sabine Grunwald, Nick Comerford, and James Sickman—Performed research: Mi-Youn Ahn—Analyzed data: Mi-Youn Ahn, Andrew Zimmerman, and Nick Comerford—Contributed new methods or models: Andrew Zimmerman, Nick Comerford, and James Sickman—Wrote the paper: Mi-Youn Ahn, Andrew Zimmerman, and Nick Comerford.     

Benthic communities in the Southern Bight of the North Sea and their use in ecological monitoring

Macrobenthic and meiobenthic communities of an area off the Belgian coast of the North Sea were studied from 1970 until 1975 at 74 stations. On the basis of both macro- and meiobenthos, three zones can be distinguished in the area. The coastal zone is characterized by the macrobenthicAbra alba community, corresponding to the meiobenthicMicroarthridion littorale — Halectinosoma herdmani community, and the open sea zone by the macrobenthicVenus gallina community and the meiobenthicLeptastacus laticaudatus — Paramesochra helgolandica community. In between is a transient zone where elements of both other zones mix. The distribution of these zones is governed by the hydrodynamical regime of the region, especially by the residual and tidal current system of the Southern Bight. Within the coastal zone, the composition of the community is influenced by pollution which especially affects the epibenthic detritus-feeders of the meiobenthos. The spatial stability of parameters describing community structure can be used for monitoring changes. Temporal characteristics of these parameters could not be investigated properly, but diversity seems to be much stabler than biomass.     

Bacteria-epiphytes of brown macro alga in oil utilization in north sea ecosystems

Using the luminescent microscopy method, an epiphytic microbial community of Fucus sp. sea macrophytes collected in the littoral zone of White Sea was investigated. The abundant colonization of macrophytes’ surface by various bacteria, yeast, and microscopic alga was revealed. Enrichment culture of microorganisms—active oxidesers of oil and its derivatives was obtained with using of fucus’ thallus fragments. In macrocosm experiments on a biological research station of Moscow State University (MSU) at the coast of White Sea at the conditions imitating that of nature, the high oxidizing ability of selected cultures of the epiphytic microbial community was demonstrated. It was shown that the rate of oil utilization depends on its concentration and amount of epiphytic microbial community biomass used for this process.     

The effect of the pH level on the communities of anoxygenic phototrophic bacteria of soda lakes of the southeastern Transbaikal Region

The effect of pH on the structure of the communities of anoxygenic phototrophic bacteria (APB) was studied under laboratory conditions. Samples of natural APB communities were inoculated into media that differed in pH values, which were 7, 9.5, or 10.5. The structure of the APB communities in the obtained enrichment cultures at all pH values depended also on the mineralization levels of the media, which were the same as in the lakes from which samples were taken. The same dependence of the community structure on salinity was observed as in the case of the natural communities that had been described previously. APB were most diverse in the enrichment cultures grown at pH 9.5. The shift of the pH to either neutral or extremely alkaline values restricted the species diversity within the APB community, resulting in marked predominance of the most adapted forms. It was shown that the status of Ectothiorhodospira species within the community could serve not only as an indicator of salinity but also as an indicator of pH in soda lakes with a water mineralization of higher than 5 g/l. The statuses of various APB groups in the community as dependent on pH and salinity are discussed, as well as possible changes in these statuses due to changes in the water level and other environmental parameters in the studied lakes.     

Classification of epigeic spiders (Araneae) at the western part of the Carpathians (Slovakia)

The epigeic spider communities of the Western Carpathians are characterised by a high number of species. The great influence of Pannonian elements on the coenoses of the Carpathian hills is evident. The habitats of the Western Carpathians differ from each other, and several types of microclimatic conditions are there. These facts affect the spider fauna. The epigeic spider communities of the western part of the Carpathians, represented by the Devínska Kobyla hill, were characterized by the constant presence of four species at all study sites — Dysdera erythrina, Agroeca cuprea, Pardosa lugubris and Trochosa terricola. Principal components analysis confirmed the high proportion of Trochosa terricola, Eresus moravicus and Scotina celans in the epigeic spider community of the steppe. In contrast, the presence of Coelotes inermis, Histopona torpida and Haplodrassus silvestris was important in the oak forest. Bray-Curtis analyses confirmed that the spider community of the oak forest differed. The migration and penetration of the species with high vagility was an important fact that affected the spider community in the ecotones. Based on the analysis of the araneocoenoses in the Western Carpathians, spiders were grouped into four categories — leaders, typical spiders, specific spiders and tourist species.     

A search for maximum species abundances in ecological communities under conditional diversity optimization

We study a multispecies community of autotrophic microorganisms which grow in a batch culture regime with several perfectly complementary resources. A basic hypothesis is that a stationary phase of the polyculture corresponds to a maximum diversity under the constraints having the meaning of matter conservation laws. The corresponding conditional extremum problem is studied in detail. It is shown that a unique solution to this problem—a “species structure formula”—adequately describes the experimental data. We prove a number of strict statements concerning the domain of definition and maxima of the obtained solutions. These statements find an adequate interpretation as limitation principles in ecology and in the problems of community structure control.     

Conservation implications of competition between generalist and specialist rodents in Mediterranean afforested landscape

Density dependent habitat selection at the community level is regarded as a major determinant of biodiversity at the local scale, and data on these processes and how they are affected by human activities is highly applicable to conservation. By studying the competitive relationships between a specialist and a generalist we can acquire valuable insights about how different environmental elements determine species abundance and distribution and consequently biodiversity. Here we describe a study of density dependent processes that determine the community structure of two rodents: a specialist—the broad toothed mouse (Apodemus mystacinus), and a generalist—the common spiny mouse (Acomys cahirinus) in a Mediterranean maqui habitat, and how this structure is impacted by anthropogenic planting of pine stands. We carried out two field experiments: The first, based on open field trapping, looking at how rodent communities change with habitat structure. The second experiment was an enclosure study aimed at validating the habitat preferences and competitive relationship between the specialist and the generalist. We identified asymmetric competition relationships in which the specialist was dominant over the generalist. Competition intensity was lower in maqui with >10% oak cover, although both species abundances were high. Competition was found only during the limiting season (summer). Based on these findings we produced management recommendations to keep indigenous small mammals’ biodiversity high. Density dependent habitat selection processes play a central role in determining biodiversity, and understanding the mechanisms motivating these processes is needed if alterations in biodiversity in response to human disturbance are to be understood.     

Distance decay of community dynamics in rocky intertidal sessile assemblages evaluated by transition matrix models

It is well known that the similarity in species composition between two communities decays with the geographic distance that separates them. It is thus likely that the similarity in the dynamics of two communities also decays with distance, because the distance–decay relationship is fundamental in nature. However, the distance–decay relationships of community dynamics have not yet been revealed. We used transition matrix models to evaluate distance–decay relationships of seasonal community dynamics (from spring to summer) in rocky intertidal sessile assemblages along the Pacific coast of Japan between 31°N and 43°N. We evaluated the distance–decay relationships of whole-community dynamics and of three dynamics-related components—recruitment, disturbance, and species interaction (competition and facilitation)—for communities separated by distances ranging from several meters to thousands of kilometers. The similarity of the recruitment dynamics among communities declined rapidly with distance within the fine spatial scale, but only moderately within larger scales. The similarity of the disturbance dynamics was independent of distance, and the similarity of species interaction declined slightly with increasing distance. The similarity of whole-community dynamics declined rapidly with distance at a fine spatial scale and moderately at larger scales. The fact that the distance–decay relationship of whole-community dynamics was similar to that of recruitment may suggest that recruitment processes are the most important determinant of spatial variability of community dynamics at our study sites during the study period.     

Allosteric serine hydroxymethyltransferase from monkey liver: Correlation of conformational changes caused by denaturants with the alterations in catalytic activity

The far-ultraviolet region circular dichroic spectrumof serine hydroxymethyltransferase from monkey liver showed that the protein is in an α-helical conformation. The near ultraviolet circular dichoric spectrum revealed two negative bands originating from the tertiary conformational environment of the aromatic amino acid residues. Addition of urea or guanidinium chloride perturbed the characteristic fluorescence and far ultraviolet circular dichroic spectrum of the enzyme. The decrease in (θ)₂₂₂ and enzyme activity followed identical patterns with increasing concentrations of urea, whereas with guanidinium chloride, the loss of enzyme activity preceded the loss of secondary structure. 2-Chloroethanol, trifluoroethanol and sodium dodecyl sulphate enhanced the mean residue ellipticity values. In addition, sodium dodecyl sulphate also caused a perturbation of the fluorescence emission spectrum of the enzyme. Extremes of pH decreased the — (θ)₂₂₂ value. Plots of — (θ)₂₂₂and enzyme activity as a function of pH showed maximal values at pH 7.4–7.5. These results suggested the prevalence of “conformational flexibility” in the structure of serine hydroxymethyltransferase.     

Phorophyte specificity and environmental parameters versus stochasticity as determinants for species composition of corticolous crustose lichen communities in the Atlantic rain forest of northeastern Brazil

A transect of 47 mature trees was studied within an Atlantic rain-forest plot in northeastern Brazil to determinate effects of phorophyte specificity and environmental parameters vs. stochasticity on the structure of corticolous, crustose microlichen communities. A total of 150 lichen species was found, most being rare to extremely rare. Multivariate analysis of sample plots indicated subtle phorophyte preferences among certain lichen species, corresponding to differences in bark pH, degree of bark shedding, density and size of bark lenticels, and presence of milk sap. Individual and multiple regressions revealed correlations between lichen species richness; respectively, area cover and bark pH (negative); density and size of bark lenticels (negative); degree of bark shedding (negative); presence of milk sap (positive); and diffuse site factor (positive). No strongly delimited lichen communities were detected, but cluster analysis revealed three main groups and six subgroups with slightly different lichen species composition, each one with characteristic indicator species but with highly variable overall species composition. Beta diversity was high among samples and lacked spatial structure. However, beta diversity was significantly lower among samples belonging to the same tree species, independent of their spatial arrangement. It was concluded that community formation in tropical rain-forest understory lichens subtly correlates with two main environmental factor complexes—phorophyte bark characteristics and microclimate—but is to a large extent determined by the stochastic effects of species dispersal, especially of rare species.     

The potential of the immunogold-silver staining method for paraffin sections

Summary After perfusion fixation of the rat kidney with glutaraldehyde, and postfixation of the renal cortex with osmium-low ferrocyanide (40 mM OsO₄+6 mM K₄Fe(CN)₆ in 0.135 M phosphate buffer, pH 8.0), secondary lysosomes of proximal tubule cells carry acoat of electron dense material on the inner surface of the lysosomal membrane. This coat separates matrix and membrane of lysosomes, and corresponds in location and width to the electron translucent halo of conventionally processed lysosomes in TEM. The material which forms the coat, is stained by phosphotungstic acid at pH 0.3, and by periodic acid — thiocarbohydrazide — silver proteinate more intensively than the cell surface coat of the same cell; it contains a high concentration of hydroxyl,vicinal-glycol and α-aminoalcohol groups. Supported by the Deutsche Forschungsgemeinschaft (SFB 105)     

Meiofaunal (re)colonization of the Arctic intertidal (Hornsund,Spitsbergen) after ice melting: role of wrack deposition

Intertidal meiobenthos of Hornsund—the southernmost fjord of Spitsbergen—was investigated between July and September 2005. Mean total meiofaunal densities ranged between 4.3 and 328 ind. 10 cm⁻². Nematode assemblages were impoverished in terms of the number of genera when compared with those from the western Spitsbergen coast (11 vs. 25–28 genera in total, respectively). It is suggested that severe environmental conditions in the southern part of Spitsbergen overcome the adaptation skills of many nematode species and hamper the establishment of a diverse community. Comparatively high nematode numbers on a beach subject to heavy macroalgal wrack input contrast sharply with numerically poor communities in sparse-wrack beaches (up to 315 vs. 31 ind. 10 cm⁻², respectively). It is suggested that the wrack input to the Arctic beach may substantially influence the richness and composition of the intertidal meiobenthic community. Nematode assemblages were dominated by extreme colonizers: Geomonhystera disjuncta and rhabditids. Their relatively high densities in beach sediments recorded at the beginning of July indicate their ability to recover rapidly after the winter period and to effective (re)colonization of the intertidal habitat just after the ice melt. Average concentration of rhabditids and monhysterids associated with macroalgal wrack deposited on the upper shore was as high as 52 × 10³ individuals per gram of the substrate. It is hypothesized that nematodes can play a substantial role in the wrack decomposition in the Arctic intertidal.     

Effects of an extended drought period on physiological properties of grassland species in the field

A very high percentage (around 70%) of the agronomic area in Switzerland is covered by grasslands at various altitudes where environmental conditions, management, community structure and productivity vary widely. As heat waves and drought are predicted to increase in future climate, survival of plant species in grasslands is a major issue of concern in Central Europe. The effect of summer drought on representative grasslands in Switzerland was studied through drought experiments (using rain-out shelters avoiding natural precipitation) to understand the response of predominant species to changed climatic conditions. The physiological performance (gas exchange, leaf water potential) of selected species was investigated at three locations in Switzerland. The pre-dawn leaf water potential of all species was lower (more negative) under the dryer conditions at the three sites. Net photosynthesis and stomatal conductance of forb and legume species did not show major changes under drought, while grass species showed large decreases at the lowland site. These differences between forb-legume and grass species were not observed at the pre-alpine and alpine site. The apparent drought tolerance of the forb-legume species seems to be due—at least partially—to increased water use efficiency under drought conditions.     

Influence of pH on the formation and location of β-glucosidase inAspergillus terreus grown on cellulose

Wild strainof Aspergillus terreus is very good producer of /gb-glucosidase. It produces 15 nkat/mL (0.9 IU/mL) of extracellular β-glucosidase at pH 5.0. The medium pH level strongly affects the production and binding of β-glucosidase on the cells and on residual cellulose. At pH 4.0 the rate of enzyme synthesis and the level of total activity is highest but 60—75 % of this activity is bound. At higher pH levels the enzyme is mainly released to the medium.