Extracting useful data from imperfect monitoring schemes: endangered butterflies at San Bruno Mountain,San Mateo County,California (1982–2000) and implications for habitat management

Managers surveyed for sensitive butterfly species in the San Bruno Mountain Habitat Conservation Plan area between 1982 and 2000 using an opportunistic “wandering transect” method. To extract as much valuable information as possible from the data collected by this method we analyzed patterns of surveys and butterfly presence and absence within 250 m square cells gridded across the area within a Geographic Information System. While estimates of butterfly abundance were not possible, the data could be tested for trends in butterfly occupancy. For those cells surveyed during at least 10 years, no trends in the total number of occupied cells was evident for either Callippe silverspot or mission blue butterfly. There were cells, however, that showed positive or negative trends (P < 0.20) in occupancy for each species (Callippe silverspot: 14 positive, 15 negative, 6 cells occupied all years; mission blue butterfly: 40 positive, 40 negative, 2 cells occupied all years). We conclude that for the period 1982–2000 the population of each species was stable in overall total distribution, but indicate geographic areas of concern for each, specifically the edges of the northeast ridge for Callippe silverspot butterfly and the northwest of the study area for mission blue butterfly. Vegetation composition analysis using orthophotography with field corroboration indicates that those areas with declines in occupancy for these species experienced native coastal scrub succession and a corresponding loss in grassland butterfly habitat, while positive trending and stable cells had stable grassland proportions. Habitat managers at San Bruno Mountain should therefore incorporate programs for protecting grassland butterfly habitat not only from invasive weeds but also from succession to native coastal scrub. This approach illustrates the feasibility of using occupancy as an indicator to track butterfly status in a protected area even when suboptimal data collection methods are used, but the difficulties of using these data also reinforces the need for managers to devise monitoring schemes appropriate for their objectives before implementing them.     

Assessing the effects of habitat characteristics and co-occurrence with closely related species on occupancy of resident ‘wood-warblers’ in a Neotropical working landscape

The simultaneous effects of habitat traits and interspecific interactions determine the occurrence and habitat use of wildlife populations. However, little research has been devoted to examining spatial co-occurrence among closely related species while considering the effect of habitat variation and imperfect detectability of species in the field. In this study, we focused on migratory and resident 'wood-warblers' that coexist during the winter in a Neotropical working landscape in southern Mexico to understand if habitat occupancy of resident wood-warblers is influenced by habitat characteristics and by the presence of other species of resident and migratory wood-warblers. For this purpose, we implemented two-species occupancy models, which account for the imperfect detectability of these birds in the field. Our results revealed that habitat occupancy of resident wood-warblers was positively influenced by the presence of other closely related species (both migratory and resident). These positive relationships may be explained by the fact that different species of wood-warblers frequently participate in mixed-species flocks. However, these patterns of species co-occurrence were more evident among resident species than between migratory and resident species, which may be explained by micro-habitat segregation and differences in behaviours between resident and migratory wood-warblers. We also found that some habitat characteristics may mediate the observed patterns of species co-occurrence. Specifically, sites with larger trees were associated with the co-occurrence of some species of resident wood-warblers. In addition, we discuss the possibility that species co-occurrence might be the result of shared preferences for environmental factors that we did not consider. Our study highlights the importance of the interplay between species co-occurrence and habitat traits in determining the presence and habitat use of resident birds in Neotropical working landscapes.     

Annotated checklist of marine fishes from the Sanctuary of Bahía Chamela,Mexico with occurrence and biogeographic data

An annotated checklist of marine fishes of the Sanctuary of Islands and Islets of Bahía Chamela in the central Mexican Pacific is presented. Records of fish species were obtained by different methods including visual census, sampling with anesthetics, fisherman-nets, and trawling with a biological dredge. Additional records were obtained from natural history collections and publications. The list comprises 196 species in 64 families and 141 genera. The Carangidae is the most speciose family with 11 species, followed by the Labridae with 10 and the Pomacentridae with nine. Fourteen species are endemic in Mexican Pacific waters, but none is restricted to Bahía Chamela. The most dominant species recorded during underwater surveys were Epinephelus labriformis, Stegastes flavilatus, and Halichoeres dispilus. Most species are of tropical affinities distributed throughout the tropical eastern Pacific (123), eastern Pacific (23), and Mexican Pacific (14). Other species are known from the eastern and Indo-Pacific regions (18), eastern Pacific and western Atlantic oceans (2), and some are circumtropical (9). A new record of the Gulf Brotula Ogilbia ventralis is provided for the Bahía Chamela and its geographical distribution is extended to Mexican central Pacific.     

The treatment and follow-up of ‘recurrence’ with discharged COVID-19 patients: data from Guizhou,China

We reported 20 cases of discharged COVID-19 patients whose RT-PCR test results showed ‘re-positive’. After finding ‘re-positive’, these patients were admitted to hospital for the second time and were followed up until the end of May 2020. We recorded detailed treatment and follow-up process, and collected relevant data. The possible causes and potential clinical significance of this phenomenon are discussed.     

Plas’O'Soins: A software platform for modeling,planning and monitoring homecare activities

Demographic changes in recent years have contributed to a shift in care models, with the development of homecare as a new alternative to traditional hospitalization. We present a software platform dedicated to the modeling, planning and monitoring of homecare workflows, developed in the framework of the French research program TecSan. The platform is used on the desktop by care coordinators, and on the go by care workers using mobile devices.     

National‐scale analyses of habitat associations of Marsh Tits Poecile palustris and Blue Tits Cyanistes caeruleus: two species with opposing population trends in Britain

Capsule Marsh Tits were strongly associated with both the amount and species diversity of woodland understorey; Blue Tits were associated with large trees and deadwood.

Aims To gather quantitative information on the habitat requirements of Marsh Tits, in comparison with those of Blue Tits, across a large number of sites in England and Wales, and secondly to evaluate the range of habitat conditions likely to encourage the presence, and increase the abundance of, each species.

Methods Counts of birds were made at each of 181 woods across England and Wales, and habitat data were collected from the same locations in each woodland. Marsh Tit and Blue Tit presence and abundance were related to habitat characteristics, interspecific competition and deer impact.

Results Shrub cover and species diversity were important for the presence and abundance of Marsh Tits, across their geographical range in Britain. Blue Tits were associated with large trees and deadwood.

Conclusion Our results support the hypothesis that changes in woodland management, leading to canopy closure and a decline in the understorey available, could have had an impact on Marsh Tits, and may have led to the observed population decline. These same changes were also consistent with population increase in Blue Tits.     

First Australian records of Scalaronoba Powell, 1927 (Gastropoda: Aclididae?), with the description of two new species from Victoria

The marine microgastropod genus Scalaronoba Powell, 1927 (Gastropoda: Aclididae?) is recorded from Australia for the first time, with the new species Scalaronoba kryptopleurakia n. sp. and Scalaronoba arenula n. sp. described from central Victoria. Three other indeterminate Victorian specimens are illustrated and discussed. These are the first records for the genus outside New Zealand. The uncertainty of the familial placement of Scalaronoba is discussed. These species are noted as being amongst the smallest gastropods to be recorded from Victorian waters. http://www.zoobank.org/urn:lsid:zoobank.org:pub:98860E57-6EC0-4F15-93D7-34A823E41E07     

Zoogeography and the predator-prey ‘arms race:’ A comparison of eriphia and nerita species from three faunal regions

We measured maximum shell diameters and thicknesses of Nerita funiculata Menke and N. scabricosta Lamarck (Gastropoda: Neritidae), and claw sizes and carapace widths of the predatory crab Eriphia squamata Stimpson (Brachyura: Xanthidae), from the Gulf of California (Eastern Pacific). We also tested the ability of E. squamata to crush Nerita shells of various sizes. We compared this data on predator-prey counteradaptations with previously published data for congeneric species from the Western Atlantic and Indo-West Pacific regions. In relative abilities of the crabs to crush gastropod shells, and of the gastropod shells to resist such crushing, the Eastern Pacific species were stronger than their counterparts in the Western Atlantic, but weaker than their Indo-West Pacific congeners, indicative of an intermediate level of faunal dominance or predator-prey arms race escalation.     

Does seed germination contribute to ecological breadth and geographic range? A test with sympatric Diplusodon (Lythraceae) species from rupestrian fields

We tested the regeneration niche hypothesis by comparing the germination ecology of two sympatric Diplusodon species differing in their geographic range and microhabitat. Diplusodon orbicularis is an endemic shrub achieving high densities on sandy soils, whereas Diplusodon hirsutus has a wider geographic range and establishes on rocky outcrops. Seeds were set to germinate under constant temperatures of 15, 20, 25, 30 and 35°C under 12 h light/12 h dark conditions. Light induced germination in both species, but germination under darkness was also observed. Optimum conditions for germination were 25°C/light for both species. The lack of differences in soil temperatures between rocky outcrops and sandy soils provides evidence of no temperature‐dependent microhabitat selection. Unexpectedly, germinability of the more widespread species was lower than that of the endemic congener. Higher germinability of D. orbicularis may account for higher densities when compared with D. hirsutus. Our results provide limited support for the role of germination in contributing to ecological breadth and geographic range.     

Subclinical atherosclerosis and impaired bone health in patients with primary Sjogren’s syndrome: prevalence,clinical and laboratory associations

IntroductionTo determine the prevalence and clinical/laboratory associations of subclinical atherosclerosis and impaired bone health in primary Sjogren’s syndrome (SS).Methods64 consecutive patients with primary SS, 77 with rheumatoid arthritis (RA) and 60 healthy controls (HC) οf similar age and sex distribution were enrolled. Demographics, clinical/laboratory features, classical risk factors for atherosclerosis and osteoporosis (OP) were recorded. Intima-medial thickness scores (IMT) and carotid/femoral (C/F) plaque formation, as well as bone mineral density (BMD) and fractures were evaluated. Determinants of IMT/BMD levels and the presence of plaque were assessed by univariate and multivariate models. Serum levels of the Wnt signaling mediators Dickkopf-related protein 1(DKK1) and sclerostin were determined in primary SS patients and HC.ResultsIncreased arterial wall thickening (IMT > 0.90 mm) and impaired bone health (defined as OP or osteopenia), were detected in approximately two-thirds of primary SS and RA patients, with a mean IMT value being significantly increased compared to HC. The presence of primary SS emerged as an independent risk factor for arterial wall thickening when traditional risk factors for cardiovascular disease (CVD) including age, sex, hypertension, smoking (pack/years), LDL and HDL levels were taken into account in a multivariate model [adjusted OR 95% (CI): 2.8 (1.04-7.54)]. In primary SS, age was revealed as independent predictor of increased IMT scores; age and lymphopenia as well as increased urine pH as independent determinants of C/F plaque formation and OP/osteopenia, respectively. An independent association of OP/osteopenia with plaque formation was observed when independent predictors for both variables were considered, with low DKK1 levels being associated with both plaque formation and lower BMD levels.ConclusionsComorbidities such as subclinical atherosclerosis and impaired bone health occur frequently in primary SS, in association with disease related features and traditional risk factors. Wnt signaling mediators are potentially involved in the pathogenesis of both entities.

Electronic supplementary material

The online version of this article (doi:10.1186/s13075-015-0613-6) contains supplementary material, which is available to authorized users.     

How well do multispecies coalescent methods perform with mitochondrial genomic data? A case study of butterflies and moths (Insecta: Lepidoptera)

Despite the broad adoption of multispecies coalescent (MSC) methods for nuclear phylogenomics, they have yet to be applied to mitochondrial (mt) genomic data. As the potential sources of phylogenomic bias that MSC methods can address, such as incomplete lineage sorting, horizontal gene transfer and gene tree heterogeneity, have been found in mt genomic data, these approaches may improve the accuracy of phylogenetic inference with these data. In the present study, we examined the behaviour of MSC methods in reconstructing the phylogeny of Lepidoptera (butterflies and moths), a group for which mt genomic data are known to have strong resolving power. Traditional concatenation methods of analysing mt genomes for Lepidoptera infer topologies highly congruent with those generated from independent nuclear datasets. Individual mt gene trees performed poorly in recovering consensus relationships at deep levels (i.e. superfamily monophyly and inter-relationships) and only moderately well for shallow relationships (i.e. within Papilionoidea). In contrast, MSC analyses with ASTRAL performed strongly with almost complete concordance to both concatenated mt genome analyses and independent nuclear analyses at both deep and shallow phylogenetic scales. Outgroup choice had a limited impact on tree accuracy, with even phylogenetically distant outgroups still resulting in topologies highly congruent with results from nuclear datasets, although MSC analyses appeared to be marginally more affected by outgroup choice than concatenation analyses. In general, discordance between concatenation and MSC analyses was found at nodes whose resolution varied between previous nuclear phylogenomic studies. The sensitivity of individual relationships to analysis with MSC vs concatenation can thus be used to test the robustness of phylogenetic hypotheses. For insect phylogenetics, MSC is a reliable inference method for mt genomic data and is thus a useful complement to the already widely used concatenation approaches.     

Genetic relationships among species of Contracaecum Railliet & Henry, 1912 and Phocascaris Höst, 1932 (Nematoda: Anisakidae) from pinnipeds inferred from mitochondrial cox2 sequences, and congruence with allozyme data

The genetic relationships among 11 taxa, belonging to the genus Contracaecum (C. osculatum A, C. osculatum B, C. osculatum (s.s.), C. osculatum D, C. osculatum E, C. osculatum baicalensis, C. mirounga, C. radiatum, C. ogmorhini (s.s.), C. margolisi) and Phocascoris (Phocoscris cystophorae), parasites as adults of seals, were inferred from sequence analysis 1519 bp) of the mitochondrial cytochrome c oxidase subunit II (mtDNA cox2) gene. Phylogenetic analyses obtained from Parsimony (MP) and Neighbour-Joining (NJ) K2P distance values generated similar topologies, each well supported at major nodes. All analyses delineated two main clades: the first encompassing the parasites of the phocid seals, i.e. the C. osculatum species complex, C. osculatum boicolensis, C. mirounga and C. radiatum, with the latter two species forming a separate subclade; the second including the parasites of otarids, i.e. C. ogmorhini (s.s.) and C. margolisi. An overall high congruence between mtDNA inferred tree topologies and those produced from nuclear data sets (20 allozyme loci) was observed. Comparison of the phylogenetic hypothesis here produced for Controcaecum spp. plus Phocascaris with those currently available for their definitive hosts (pinnipeds) suggests parallelism between hosts and parasite phylogenetic tree topologies.     

Description of a new species of Distenia (Coleoptera,Disteniidae, Disteniini) from Southeastern China,with?records and diagnoses of similar species

A new species, Distenia orientalis sp. n. is described from Southeastern China. It was misidentified as Distenia gracilis (Blessig, 1872) but can be separated from the latter by the color of antennae and legs, structure differences on scape, maxillary palp, pronotum, tibiae, punctures on elytra, etc. Three related species are carefully diagnosed and treated.     

A trait-based approach to species’ roles in stream ecosystems: climate change,community structure,and material cycling

The sustained decline in habitat quality and community integrity highlights the importance of understanding how communities and environmental variation interactively contribute to ecosystem services. We performed a laboratory experiment manipulating effects of acclimation temperature (5, 15, 25, and 35°C) on resource acquisition, assimilation and subsequent ecosystem services provided by eight freshwater mussel species. Our results suggest that although freshwater mussels are broadly categorized as filter feeders, there are distinct nested functional guilds (thermally tolerant and sensitive) associated with their thermal performance. At 35°C, thermally tolerant species have increased resource assimilation and higher rates of contributed ecosystem services (nutrient excretion, benthic–pelagic coupling). Conversely, thermally sensitive species have decreased assimilation rates and display an array of functional responses including increased/decreased benthic–pelagic coupling and nutrient excretion. Although thermally sensitive species may be in poorer physiological condition at warmer temperatures, their physiological responses can have positive effects on ecosystem services. We extrapolated these results to real mussel beds varying in species composition to address how shifts in community composition coupled with climate change may shift their contributed ecological services. Comparative field data indicate that two co-existing, abundant species with opposing thermal performance (Actinonaias ligamentina, Amblema plicata) differentially dominate community biomass. Additionally, communities varying in the relative proportion of these species differentially influence the magnitude (benthic–pelagic coupling) and quality (N:P excretion) of ecosystem services. As species are increasingly threatened by climate change, greater emphasis should be placed on understanding the contribution of physiological stress to the integrity and functioning of ecosystems. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

A new species of Amphibulus Kriechbaumer (Hymenoptera,Ichneumonidae, Cryptinae) from?Beijing with a key to species known from the?Oriental?and Eastern Palaearctic regions

A new species, Amphibulus melanarius Zong, Sun & Sheng, sp.n., belonging to the tribe Phygadeuontini of the subfamily Cryptinae (Hymenoptera: Ichneumonidae), collected from Beijing, China, is reported. A key to the species of the genus Amphibulus Kriechbaumer, 1893 known in the Oriental and Eastern Palaearctic Regions is provided.     

Wearable Sensor Use for Assessing Standing Balance and Walking Stability in People with Parkinson’s Disease: A Systematic Review

Background

Postural instability and gait disability threaten the independence and well-being of people with Parkinson’s disease and increase the risk of falls and fall-related injuries. Prospective research has shown that commonly-used clinical assessments of balance and walking lack the sensitivity to accurately and consistently identify those people with Parkinson’s disease who are at a higher risk of falling. Wearable sensors provide a portable and affordable alternative for researchers and clinicians who are seeking to objectively assess movements and falls risk in the clinical setting. However, no consensus currently exists on the optimal placements for sensors and the best outcome measures to use for assessing standing balance and walking stability in Parkinson’s disease patients. Hence, this systematic review aimed to examine the available literature to establish the best sensor types, locations and outcomes to assess standing balance and walking stability in this population.

Methods

Papers listed in three electronic databases were searched by title and abstract to identify articles measuring standing balance or walking stability with any kind of wearable sensor among adults diagnosed with PD. To be eligible for inclusion, papers were required to be full-text articles published in English between January 1994 and December 2014 that assessed measures of standing balance or walking stability with wearable sensors in people with PD. Articles were excluded if they; i) did not use any form of wearable sensor to measure variables associated with standing balance or walking stability; ii) did not include a control group or control condition; iii) were an abstract and/or included in the proceedings of a conference; or iv) were a review article or case study. The targeted search of the three electronic databases identified 340 articles that were potentially eligible for inclusion, but following title, abstract and full-text review only 26 articles were deemed to meet the inclusion criteria. Included articles were assessed for methodological quality and relevant data from the papers were extracted and synthesized.

Results

Quality assessment of these included articles indicated that 31% were of low methodological quality, while 58% were of moderate methodological quality and 11% were of high methodological quality. All studies adopted a cross-sectional design and used a variety of sensor types and outcome measures to assess standing balance or walking stability in people with Parkinson’s disease. Despite the typically low to moderate methodological quality, 81% of the studies reported differences in sensor-based measures of standing balance or walking stability between different groups of Parkinson’s disease patients and/or healthy controls.

Conclusion

These data support the use of wearable sensors for detecting differences in standing balance and walking stability between people with PD and controls. Further high-quality research is needed to better understand the utility of wearable sensors for the early identification of Parkinson’s disease symptoms and for assessing falls risk in this population.

PROSPERO Registration

CRD42014010838     

A new species of Gudeodiscus Páll-Gergely, 2013 from China,with extraordinary conchological and anatomical features (Gastropoda,Pulmonata, Plectopylidae)

A new species of the Plectopylidae, Gudeodiscuslongiplica is described from northern Guangxi Province, southern China. The shell, anatomical and radular characters are figured and described. This new species is characterized by long plicae on its parietal shell wall, which have not been observed in any other Gudeodiscus species. In contrast, the long parietal plicae are characteristic for the genera Plectopylis and Chersaecia, which mainly inhabit Thailand and Myanmar. These two genera are, however, only distantly related to the new species, as other characters (anatomy, protoconch sculpture, parietal plicae) suggest. The male portion of the genital structure of the new species is characterized by two separate penial caeca with different lengths, but similar in outer and inner structure. The relevance of this anatomical character is discussed. Gudeodiscuslongiplicasp. n. occurs sympatrically with Gudeodiscussoosi Páll-Gergely, 2013. The anatomy and radula characters of the latter species are also described and figured.     

Petunia guarapuavensis (Solanaceae): A new species from planalto of Paraná and Santa Catarina,Brazil

Petunia guarapuavensis, a new species fromplanalto (high plateau) of Paraná and Santa Catarina in Brazil, is described, and its morphological distinction from related species, features of the habitats, and geographical distribution are discussed.     

A new species of the genus Himertosoma from the Ryukyus,Japan, with a key to species from the Palaearctic and Oriental Regions (Hymenoptera,?Ichneumonidae,Banchinae)

A new species of the genus Himertosoma Schmiedeknecht, Himertosoma kuslitzkii sp. n., was discovered in Amamioshima Island, the Ryukyus. This new species resembles two Oriental species, Himertosoma philippense Chandra & Gupta and Himertosoma townesi Chandra & Gupta, in the colour pattern of the head and metasoma, number of flagellomeres, and the relatively slender first metasomal tergite, but can easily be distinguished from them by the nearly evenly punctate propodeum, different length/width ratio of the first metasomal tergite, different length of the ovipositor sheath, tricoloured mesosoma, and the whitish band along the posterior margin of the second and following metasomal tergites. A key to the Palaearctic and Oriental species of Himertosoma is also provided.     

‘Ferry-Boxes’ and data stations for improved monitoring and resolution of eutrophication-related processes: application in Southampton Water UK,a temperate latitude hypernutrified estuary

To provide detailed observations of algal bloom development in Southampton Water which is a hypernutrified, macro-tidal estuary (mean tidal range 3.2 m, low suspended load <100 g m^–3), a ferry running between Southampton and Cowes on the Isle of Wight, was fitted with an instrument package (Ferry-Box). Measurements were made of temperature, conductivity, turbidity, and chlorophyll-fluorescence at a data rate of 1Hz. For comparison a data station which measured the same variables was operated at a fixed site in the estuary. In 1999 the Ferry-Box achieved reliable operation with a data return over 95%, for the fixed data station the return was 92%. From this data spatial and temporal variations in chlorophyll a concentrations have been mapped. The maps show the development of blooms in different areas of the estuary, through the spring and summer, in relation to tidal and weather conditions. In 1999 conditions were such that the spring bloom increased in intensity through a spring tide (maximum chlorophyll a 55 mg m^–3), which coincided with calm weather with high light levels (irradiance). This was followed by a sequence of seven blooms, the development of which can be related to changes in the tidal energy, irradiance and nutrient supply.