基于cDNA芯片的梨品种S基因型鉴定及新S-RNase基因进化分析

梨品种S基因型鉴定对梨栽培中授粉品种选择和遗传育种都具有重要意义。本研究利用梨S-RNase基因荧光标记的特异引物PCR扩增获得梨品种荧光标记的cDNA特异产物;进一步完善梨S-RNase基因cDNA芯片,以被检测梨品种cDNA特异序列与梨S-RNase基因cDNA芯片杂交检测不同梨品种S基因型,并发现新的S-RNase基因。结果表明:利用梨S-RNase基因cDNA芯片鉴定了泸定王皮梨、兴山24号、弥渡百合等35个未知S基因型梨品种,确定了各品种的S基因型。结合PCRRFLP及DNA克隆和测序等技术,发现了7个新的S-RNase基因资源,获得了新S-RNase基因序列。序列分析表明各新S-RNase基因均具有S-RNase基因特异区域序列的典型特征;进化分析显示7个新S-RNase基因主要属于蔷薇科苹果亚科S-RNase类群,且存在种间和属间比种内和属内进化关系更近的现象。7个新的S基因分别命名为:PpS_(53)(Pyrus pyrifolia S53)、PpS_(54)、PpS_(55)、PpS_(56)、PpS_(57)、PpS_(58)和PpS_(59),GenBank登录号分别为:KX581753、KX581754、KX581755、KX581756、KX581757、KX581751和KX581752。     

显花植物自体和异体花粉识别的分子机理研究

显花植物的受精涉及许多识别过程,其中和线个是雌性生殖组织心皮对花粉的识别。自交不亲和性（Self-incompatibility,SI)是一种广泛分布于显花植物的种内生殖障碍。在多数自交不亲和的植物中,SI的遗传控制比较简单,受控于一个由复等位基因构成的单一位点,称为S位点。在以茄科、玄参科和蔷薇科为代表的配子体自交不亲和植物中,S位编码一类核酸酶,即S核酸酶（Fig.1),控制SI在花柱中的表达,但是与花粉自交不亲和性的表达无关。后者可能由与S核酸酶不同的基因控制,这种基因常被称为花粉S基因。它是目前了解显花植物花粉识别生化和分子机理的关键。近来,通过对影响花粉SI表达突变体的前了解 花植物花粉识别生化和分子机理的关键。近来,通过对影响花粉SI表达突变体的分子遗传分析提出了一个花粉S基因产物如何与S核酸酶相互作用完成自体和异体花粉识别过程的模型（Fig.2)。另外,描述了两个在金鱼草中克隆花粉S基因的方法,即S位点选择性的转座子标记和图位克隆。     

植物花粉S基因及其应用研究进展

自交不亲和性(self-incompatibility)研究是探讨植物遗传机制和植物育种的重要基础.在显花植物中,配子体自交不亲和由花柱S基因S-RNase和花粉S基因两个基因控制,这两个基因都具有较高的多态性和序列多样性的特征.花粉自交不亲和性是由花粉特异表达的F-box基因控制,命名为SFB(S haplotype-specific F-box protein)基因,并认为它就是花粉S基因的首选.就SFB基因的克隆、结构特点和作用机理以及应用予以综述.     

配子体自交不亲和植物花粉S基因研究进展

配子体自交不亲和植物的自交不亲和性是由雌蕊自交不亲和因子和花粉自交不亲和因子相互作用的结果。目前已经分离和鉴定了雌蕊自交不亲和基因及其表达产物。最近从金鱼草、Prumusdulcis、梅等植物中分离的F-box基因,它具有花粉S基因特点,即在花药、成熟的花粉和花粉管中特异表达;在基因位置上,与S-RNase基因紧密连锁;不同物种或同一物种不同品种F-box基因间核苷酸和氨基酸序列上存在高度多态性。通过分子生物学方法和杂交授粉试验证明所分离的F-box基因是花粉自交不亲和基因,但目前尚未分离出该类基因相应的表达蛋白。主要综述了配子体自交不亲和植物花粉自交不亲和基因的发现、基因的结构、雌蕊自交不亲和因子和花粉自交不亲和因子相互作用的模型。     

植物自交不亲和基因研究进展

自交不亲和性的研究是植物生殖生物学和分子生物学研究的热点之一,对自交不亲和基因和蛋白质的深入研究是解析自交不亲和性机理的关键.对控制孢子体自交不亲和性和配子体自交不亲和性的S基因及其蛋白质产物的分子生物学研究进展进行了综述.孢子体自交不亲和性植物S位点上至少存在3个基因,即SLG、SRK和SCR基因.其中SLG、SRK基因控制雌蕊自交不亲和性,而SCR控制花粉自交不亲和性.配子体自交不亲和植物雌蕊S基因产物为S-RNase,具有核酸酶活性;配子体自交不亲和植物花粉S基因产物尚未找到.     

显花植物自体和异体花粉识别的分子机理研究(英文)

显花植物的受精涉及许多识别过程;其中第一个是雌性生殖组织心皮对花粉的识别。自交不亲和性（Ｓｅｌｆ－ｉｎｃｏｍｐａｔｉｂｉｌｉｔｙ,ＳＩ）是一种广泛分布于显花植物的种内生殖障碍。在多数自交不亲和的植物中,ＳＩ的遗传控制比较简单,受控于一个由复等位基因构成的单一位点,称为Ｓ位点。在以茄科、玄参科和蔷薇科为代表的配子体自交不亲和植物中,Ｓ位点编码一类核酸酶,即Ｓ核酸酶（Ｆｉｇ．１）,控制ＳＩ在花柱中的表达,但是与花粉自交不亲和性的表达无关。后者可能由与Ｓ核酸酶不同的基因控制,这种基因常被称为花粉Ｓ基因。它是目前了解显花植物花粉识别生化和分子机理的关键。近来;通过对影响花粉ＳＩ表达突变体的分子遗传分析提出了一个花粉Ｓ基因产物如何与Ｓ核酸酶相互作用完成自体和异体花粉识别过程的模型（Ｆｉｇ．２）。另外,描述了两个在金鱼草中克隆花粉Ｓ基因的方法,即Ｓ位点选择性的转座子标记和图位克隆。     

甜樱桃(Prunus avium L.)品种S基因型鉴定

根据蔷薇科S-RNase基因(S基因)高度保守区C2和RC4区设计一对特异引物PruC2和PruC4R,对甜樱桃品种的基因组DNA进行S基因特异PCR扩增。克隆S基因的扩增片段,核酸序列在GenBank上搜索,确定了4种S基因的核酸序列和大小。结果表明,在琼脂糖凝胶上位置相同的扩增带其核酸序列相同,是同一种S基因。4种S基因扩增片段的大小分别是：S1为677bp,S3为762bp,S4为945bp,S6为456bp。参试的自交不亲和品种的S基因型分别是：红灯、红艳、早红宝石和先锋相同,为S1S3;抉择、红丰和那翁相同,为S3S4;大紫为S1S6;长把红为S1S4;养老为S2S6;自交亲和品种外引7号和斯太拉为S3S4。     

CRISPR-Cas核酸酶及其人工改造变体和单碱基编辑器在植物中的应用

规律间隔成簇短回文重复序列(CRISPR)-CRISPR相关蛋白(Cas)和单碱基编辑器是植物基因编辑的基本工具。来自酿脓链球菌的Cas9(SpCas9)可以识别NGG前间区序列邻近基序(PAM),是一种广泛应用于活细胞基因组编辑的核酸酶。Cas12a核酸酶最近也在多种植物中实现了靶向识别富含T的PAM序列。     

花粉——雌蕊相互作用的分子基础

显花植物授粉过程包含了花粉与雌蕊一系列复杂的细胞间相互作用。花粉在柱头上必须发生粘附与水合作用后才能萌发,花粉胞被蛋白可能在粘附机制中起主要作用,而水孔蛋白调节了花粉的水合过程;花粉管在花柱引导组织中定向生长,受引导组织胞间质、向化性物质及细胞粘附机制等因素的影响,也与花粉受体及子房有关。在植物的自交不亲和性反应中,配子体型自交不亲和性反应主要是由自交不亲和基因蛋白产物降解花粉RNA或以Ca^2 介导的信号级联反应实现的;孢子体型自交不亲和性反应则依赖于干性柱头以及雌蕊的S受体激酶及S位点糖蛋白与花粉S基因配体之间的相互作用。     

表达序列标签及基因芯片技术在植物抗性基因研究中的应用

表达序列标签和基因芯片技术是基因组学研究的重要手段。表达序列标签是cDNA的3’或5’端的一段序列,通过表达序列标签可以寻找在某种胁迫条件下特异表达的基因并推测其可能的功能。基因芯片技术是指将大量基因探针分子固定于载体上并与标记的样品分子进行杂交,通过检测每个探针分子的杂交信号强度获取样品分子数量和序列信息,通过基因芯片技术,可以研究基因在不同的条件下的表达量,进而研究植物抗性机理。     

Self-fertile apple resulting from S-RNase gene silencing

Self-incompatibility (SI) restricts fertilisation and fruit setting in many tree fruit crops. In apple, we have produced transgenic trees harbouring extra copies of the endogenous S-gene controlling SI. Two independent transgenic genotypes were characterised in detail. Controlled self- and cross-pollination of the flowers of trees from both genotypes over a 3-year-period showed that the transgenic lines produced normal levels of fruit and seeds after selfing. In contrast, the controls produced much less fruit following self- compared to cross-pollination. Fruit set data correlated with the results of microscopic evaluation of pollen tube growth through the pistil, which revealed inhibition after selfing in the controls but not in the transgenic lines. The self-fertile phenotype was associated with the complete absence of pistil S-RNase proteins, which are the products of the targeted S-gene. These results confirm that self-fertility was due to inhibition of expression of the S-RNase gene in the pistil, resulting in un-arrested self-pollen tube growth, and fertilisation.Communicated by P. Debergh     

Identification of self-incompatibility (S-) locus linked pollen cDNA markers in Petunia inflata.

Solanaceous type self-incompatibility (SI) is controlled by a single polymorphic locus, termed the S-locus. The only gene at the S-locus that has been characterized thus far is the S-RNase gene, which controls pistil function, but not pollen function, in SI interactions between pistil and pollen. One approach to identifying additional genes (including the pollen S-gene, which controls pollen function in SI) at the S-locus and to study the structural organization of the S-locus is chromosome walking from the S-RNase gene. However, the presence of highly repetitive sequences in its flanking regions has made this approach difficult so far. Here, we used RNA differential display to identify pollen cDNAs of Petunia inflata, a self-incompatible solanaceous species, which exhibited restriction fragment length polymorphism (RFLP) for at least one of the three S-haplotypes (S1, S2, and S3) examined. We found that the genes corresponding to 10 groups of pollen cDNAs are genetically tightly linked to the S-RNase gene. These cDNA markers will expedite the mapping and cloning of the chromosomal region of the Solanaceae S-locus by providing multiple starting points.     

Structural and transcriptional analysis of the self-incompatibility locus of almond: identification of a pollen-expressed F-box gene with haplotype-specific polymorphism

Gametophytic self-incompatibility in Rosaceae, Solanaceae, and Scrophulariaceae is controlled by the S locus, which consists of an S-RNase gene and an unidentified "pollen S" gene. An approximately 70-kb segment of the S locus of the rosaceous species almond, the S haplotype-specific region containing the S-RNase gene, was sequenced completely. This region was found to contain two pollen-expressed F-box genes that are likely candidates for pollen S genes. One of them, named SFB (S haplotype-specific F-box protein), was expressed specifically in pollen and showed a high level of S haplotype-specific sequence polymorphism, comparable to that of the S-RNases. The other is unlikely to determine the S specificity of pollen because it showed little allelic sequence polymorphism and was expressed also in pistil. Three other S haplotypes were cloned, and the pollen-expressed genes were physically mapped. In all four cases, SFBs were linked physically to the S-RNase genes and were located at the S haplotype-specific region, where recombination is believed to be suppressed, suggesting that the two genes are inherited as a unit. These features are consistent with the hypothesis that SFB is the pollen S gene. This hypothesis predicts the involvement of the ubiquitin/26S proteasome proteolytic pathway in the RNase-based gametophytic self-incompatibility system.     

On the origin of self-incompatibility haplotypes: transition through self-compatible intermediates

Self-incompatibility (SI) in flowering plants entails the inhibition of fertilization by pollen that express specificities in common with the pistil. In species of the Solanaceae, Rosaceae, and Scrophulariaceae, the inhibiting factor is an extracellular ribonuclease (S-RNase) secreted by stylar tissue. A distinct but as yet unknown gene (provisionally called pollen-S) appears to determine the specific S-RNase from which a pollen tube accepts inhibition. The S-RNase gene and pollen-S segregate with the classically defined S-locus. The origin of a new specificity appears to require, at minimum, mutations in both genes. We explore the conditions under which new specificities may arise from an intermediate state of loss of self-recognition. Our evolutionary analysis of mutations that affect either pistil or pollen specificity indicates that natural selection favors mutations in pollen-S that reduce the set of pistils from which the pollen accepts inhibition and disfavors mutations in the S-RNase gene that cause the nonreciprocal acceptance of pollen specificities. We describe the range of parameters (rate of receipt of self-pollen and relative viability of inbred offspring) that permits the generation of a succession of new specificities. This evolutionary pathway begins with the partial breakdown of SI upon the appearance of a mutation in pollen-S that frees pollen from inhibition by any S-RNase presently in the population and ends with the restoration of SI by a mutation in the S-RNase gene that enables pistils to reject the new pollen type.     

S-RNase-mediated self-incompatibility

The Solanaceae, Rosaceae, and Scrophulariaceae families all possess an RNase-mediated self-incompatibility mechanism through which their pistils can recognize and reject self-pollen to prevent inbreeding. The highly polymorphic S-locus controls the self-incompatibility interaction, and the S-locus of the Solanaceae has been shown to be a multi-gene complex in excess of 1.3 Mb. To date, the function of only one of the S-locus genes, the S-RNase gene, has been determined. This article reviews the current status of the search for the pollen S-gene and the current models for how S-haplotype specific inhibition of pollen tubes can be accomplished by S-RNases.     

The S locus of flowering plants: when self-rejection is self-interest.

In certain families of flowering plants, a self-incompatibility (SI) locus prevents self-fertilization, by a specific interaction between the S-gene product produced in the pistil and the S-gene products borne on or expressed by the male gametophyte, the pollen grain. The female S-locus gene products for two families showing different types of SI have been putatively identified as major pistil glycoproteins (the S-locus-specific glycoproteins of the Brassicaceae and the S-RNases of the Solanaceae). However, they are distinct in sequence and mode of action. The nature of the S-locus gene product borne by the pollen is still uncertain in both systems.     

Construction of a binary bacterial artificial chromosome library of Petunia inflata and the isolation of large genomic fragments linked to the self-incompatibility (S-) locus.

The Solanaceae family of flowering plants possesses a type of self-incompatibility mechanism that enables the pistil to reject self pollen but accept non-self pollen for fertilization. The pistil function in this system has been shown to be controlled by a polymorphic gene at the S-locus, termed the S-RNase gene. The pollen function is believed to be controlled by another as yet unidentified polymorphic gene at the S-locus, termed the pollen S-gene. As a first step in using a functional genomic approach to identify the pollen S-gene, a genomic BAC (bacterial artificial chromosome) library of the S2S2 genotype of Petunia inflata, a self-incompatible solanaceous species, was constructed using a Ti-plasmid based BAC vector, BIBAC2. The average insert size was 136.4 kb and the entire library represented a 7.5-fold genome coverage. Screening of the library using cDNAs for the S2-RNase gene and 13 pollen-expressed genes that are linked to the S-locus yielded 51 positive clones, with at least one positive clone for each gene. Collectively, at least 2 Mb of the chromosomal region was spanned by these clones. Together, three clones that contained the S2-RNase gene spanned approximately 263 kb. How this BAC library and the clones identified could be used to identify the pollen S-gene and to study other aspects of self-incompatibility is discussed.     

G蛋白调节剂和花柱S-核糖核酸酶对花粉管生长及其钙离子浓度的影响

以‘丰水’和‘幸水’梨花柱及花粉为试材,用激光共聚焦显微技术,研究了离体条件下G蛋白活性调节剂和花柱S-RNA酶对花粉管生长及其游离Ca~(2 )浓度的影响。结果表明:G蛋白激活剂CTX可促进花粉管生长,且可解除花柱S-RNA酶对自身花粉管生长的抑制作用;G蛋白抑制荆PTX和花柱S-RNA酶共同处理使异体的花粉管生长受到抑制。CTX处理使花粉管尖端区的[Ca~(2 )]_i明显升高,花柱S-RNA酶处理引起自身花粉管尖端区的[Ca~(2 )]_i梯度消失;CTX和花柱S-RNA酶共同处理则使自身花粉管内的[Ca~(2 )J_i表现出两者单独处理时的综合特征;而花柱S-RNA酶和PTX共同处理后,异体的花粉管内[Ca~(2 )]_i表现出先升高后下降的趋势。