Structural organization of pLP1, a cryptic plasmid from Lactobacillus plantarum CCM 1904

To construct shuttle vectors based on an endogenous replicon, we isolated a small cryptic plasmid (pLP1) from Lactobacillus plantarum CCM 1904. The nucleotide sequence (2093 bp, 38.25 GC mol%) revealed one major open reading frame encoding for a 317 amino acid protein (Rep). Comparisons with proteins encoded by other Gram-positive bacteria plasmids strongly suggest that the protein encoded by pLP1 has a replicative role. The presence of a consensus sequence including a tyrosine residue known to be the replication protein binding site to the DNA (in phage phi X174) strengthens this hypothesis. The DNA sequence contains also a sequence similar to the pC194 origin nick sequence, which initiates the plasmid replication at the plus origin, characteristic of plasmids which replicate following a rolling circle mechanism via single-stranded DNA intermediates. A set of 13 direct repeats of 17 bp could be involved in the expression of the incompatibility or in the copy number control as in the other plasmids. A promoter sequence located at the rep 5' region has been identified and is functional in Bacillus subtilis.     

Structural organization of pBC1, a cryptic plasmid from Bacillus coagulans.

The complete nucleotide sequence of the Bacillus coagulans plasmid pBC1 was determined. The sequence revealed an open reading frame encoding a polypeptide of 259 amino acids. This open reading frame shows sequence similarity to genes coding for replication-associated proteins in a group of gram-positive bacterial plasmids known to replicate via single-stranded intermediates. A region required for replication in cis, when the intact replicon is supplied in trans, was identified as well.     

短乳杆菌与植物乳杆菌的发酵特性

【背景】目前对于酸菜发酵的研究主要关注点是植物乳杆菌(Lactobacillus plantarum),有关短乳杆菌(Lactobacillus brevis)在酸菜方面的研究报道很少。【目的】为了挖掘短乳杆菌的发酵性能并开发酸菜发酵剂,将2株短乳杆菌分别与1株植物乳杆菌进行组合并发酵酸菜,分析短乳杆菌对酸菜发酵品质的影响。【方法】分别测定短乳杆菌与植物乳杆菌的单菌株生长产酸性能、耐酸性及亚硝酸盐降解力,并将两菌种组合后发酵酸菜,分析1-7d内酸度、乳酸菌活菌数、亚硝酸盐含量及酸菜质构特性的变化趋势。【结果】相较于短乳杆菌Lb-9-2,短乳杆菌Lb-5-3的生长和产酸速率较慢、酸耐受力较弱,但其亚硝酸盐降解力较强。两株短乳杆菌分别与植物乳杆菌Lp-9-1组合后产酸力显著增强,并在3 d时达到最低pH值(约3.10);植物乳杆菌Lp-9-1的添加使酸菜中总体乳酸菌生长延迟,在5 d时达到最高活菌数;组合菌种的样品中亚硝酸盐含量在1-7 d内变化较为平缓,前5天内两个组合之间差异不显著;接种乳酸菌会降低酸菜硬度和弹性,发酵3d时Lb-5-3/Lp-9-1组合的硬度最大,感官评价得分最高。【...     

Characterization, cloning, curing, and distribution in lactic acid bacteria of pLP1, a plasmid from Lactobacillus plantarum CCM 1904 and its use in shuttle vector construction

A small 2.1-kb plasmid called pLP1 was extracted from Lactobacillus plantarum CCM 1904 (ATCC 8014) and cloned into the Escherichia coli pUC19 plasmid. As determined by DNA-DNA Southern hybridization with a pLP1-radioactively labeled probe, other lactic acid bacteria such as L. curvatus, L. sake, Carnobacterium, and Leuconostoc mesenteroides harbor pLP1-related plasmids. Shuttle vectors based on the pLP1 replicon were constructed by inserting the erythromycin-resistance gene from pVA891 into the various pUC19-pLP1 constructions. pLP1-based shuttle vector transformation efficiencies (TE) by electroporation were compared to TE of a broad-host-range plasmid pGK12 in different lactobacilli strains. Expression of the pUC19-pLP1 plasmids in Escherichia coli maxicells showed that pLP1 encodes for a 37,000 MW protein which can act in trans allowing the replication of plasmids in which this protein is truncated. The pLP1-based shuttle vectors producing this protein replicate in lactobacilli and also in Bacillus subtilis. A pLP1-free strain was obtained by incompatibility with a pLP1-based shuttle vector introduced in L. plantarum CCM 1904 by electroporation. The absence of pLP1 has no incidence on the strain phenotype suggesting that pLP1 is not essential for the strain in our laboratory conditions.     

Asparagine transport in Lactobacillus plantarum and Streptococcus faecalis

The properties of het asparagine transport systems in Lactobacillus plantarum and Streptococcus faecalis are described. In both organisms the uptake of isotopically labeled l-asparagine was markedly stimulated by glucose. Kinetic studies yielded curvilinear Lineweaver-Burk plots in both organisms. These data were most consistently accounted for in both organisms by assuming the operation of two catalytic uptake components in addition to a diffusion component. The occasional limitation of kinetic studies in distinguishing between single or multiple catalytic components is illustrated. A large selection of structurally related amino acids and other substances were tested as competitors in initial rate studies. In L. plantarum the most effective competitors. structurally related dicarboxylic acid amide derivatives were only moderately effective competitors. In contrast, the most effective competitors of l-arparagine uptake in S. faecalis were relatively small neutral amino acids such as l-alanine, l-serine. l-αaminobutyric acid, l-cysteine and l-methionine, suggesting that asparagine enters this organism by reaction with a catalyst having relatively unspecific structural discrimination among neutral amino acids. Both organisms rapidly converted a large proportion of the transported asparagine to aspartic acid. In S. faecalis, the deamidation of l-asparagine was shown to be relatively insensitive to inhibition by those amino acids which were most effective in reducing the asparagine entry rate.     

Characterization of a cryptic plasmid from Lactobacillus fermentum KC5b and its use for constructing a stable Lactobacillus cloning vector

Lactobacillus fermentum KC5b, a strain originally isolated from the human vagina, contains a cryptic plasmid pKC5b. The sequence and genetic organization of the 4392-bp plasmid were determined. It contains two convergently oriented replicons, which are homologous to each other and to the stable replicon of the Enterococcus faecium plasmid pMBB1. The two replicons of pKC5b were used either individually or together to construct Lactobacillus–Escherichia coli shuttle plasmids. Only the plasmid pSP1 that carried both replicons transformed lactobacilli, suggesting a complementary function between the two replicons. Since the replicons had a high homology to those of other plasmids that replicate via a theta-like mechanism and no detectable single-stranded intermediates were found for the plasmid, it is possible that pKC5b may replicate via a theta-like mechanism. The new shuttle plasmid pSP1 has been transformed and stably maintained in several Lactobacillus strains. As an initial application, pSP1 was used to clone the S-layer protein gene (slpA) of Lactobacillus acidophilus ATCC 4356 into a heterologous vaginal Lactobacillus strain and achieved surface-bound expression of the protein.     

植物乳杆菌素L-1对单核细胞增生李斯特氏菌作用机理的研究

以凝胶层析纯化的植物乳杆菌素作用单核细胞增生李斯特氏菌,结果表明该细菌素可以导致能量化的敏感细胞胞内K 、无机磷离子、乳酸脱氢酶、紫外吸收物质和ATP发生不同程度的泄漏,相应地破坏了膜Δψ和部分ΔpH,引起PMF的耗散,结果导致细胞的死亡。综合所测指标,可以推测植物乳杆菌素L-1对单增李斯特氏菌的作用目标主要是细胞膜,通过形成非选择性孔洞使得选择性离子和小分子生命物质外泄,从而打破原有平衡,最终引起细胞的衰亡。     

Characterization of pLP18, a novel cryptic plasmid of Lactobacillus plantarum PC518 isolated from Chinese pickle

A cryptic plasmid of Lactobacillus plantarum PC518 isolated from Chinese pickle, designated pLP18, was sequenced and characterized. It is a 1806-bp circular molecule with a G+C content of 37.5%. Sequence analysis of pLP18 revealed three putative open reading frames (ORFs), in which ORF1 contained conserved motifs of pMV158-family Rep proteins and showed 60% similarity with the Rep protein of pPSC22, a member of rolling-circle replication (RCR) pMV158 family. The double strand origin (dso) of pMV158 family and the single strand origin A (ssoA) located upstream of the rep gene. The putative cop and rnaII genes were predicted to be regulatory genes controlling copy number of pLP18. The results of Southern hybridization suggested that pLP18 replicate via the RCR mechanism. Furthermore, the relative copy number of pLP18 was estimated to be about 24 copies per chromosome equivalent by quantitative PCR.     

一株植物乳杆菌Lp3对高脂模型大鼠的益生作用

【目的】本研究通过构建大鼠高脂结构模型来探究一株植物乳杆菌Lp3的益生作用。【方法】植物乳杆菌Lp3筛选自青藏高原地区传统发酵的牦牛酸奶,初步认定Lp3是一株具有良好耐受力的降胆固醇菌株,且体外益生特性突出,本研究通过建立高脂SD大鼠模型,在饲喂试验动物高脂饲料的同时灌胃植物乳杆菌Lp3,来确定该菌株对试验动物血脂的影响效果,并同时研究其对大鼠肠道菌群、粪便水分、粪便中胆固醇和胆汁酸含量的影响,以及对肝脏组织中的胆固醇(TC)和甘油三酯(TG)的影响。【结果】结果表明,植物乳杆菌Lp3对大鼠没有任何明显的毒副作用,对高脂模型大鼠具有良好的降血脂效果。饲喂高脂饲料并灌喂乳酸菌Lp3组大鼠(HL)的血清总胆固醇、甘油三酯和低密度脂蛋白胆固醇含量较饲喂高脂饲料组(HC)显著减少(P0.05),但是高密度脂蛋白胆固醇的含量变化并不明显。HC组大鼠与HL组及饲喂普通日粮组(对照组)大鼠相比较,HC组大鼠粪便中大肠杆菌数量明显增加,双歧杆菌、乳杆菌数量明显减少。但是灌胃乳酸菌的HL组大鼠的粪便中乳杆菌数略高于对照组,大肠杆菌和双歧杆菌数量和对照组大鼠的基本一致。表明植物乳杆菌Lp3具有维持肠道菌群平衡的作用。此外灌胃乳酸菌后HL组大鼠粪便含水量比HC组要高6.44%。HC组大鼠肝脏组织中胆固醇和甘油三酯要显著高于HL组(P0.05),说明Lp3可以减少脂类物质在肝脏组织中的沉积。从肝脏组织切片来看,也可以得出上述结论。【结论】结果表明本研究所筛选的植物乳杆菌Lp3对高脂大鼠具有值得深入研究的益生作用。     

植物乳杆菌天然质粒系统进化和起源

【目的】为了探索植物乳杆菌天然质粒系统进化关系和起源。【方法】本文利用复制起始蛋白(replication initiation protein,Rep)系统进化树、基因组共线性、基因组GC含量和宿主范围分析方法,对植物乳杆菌75个天然质粒的系统进化关系和起源进行了详细和多角度的分析。【结果】首先,Rep系统进化树和基因组共线性分析结果均表明,植物乳杆菌所有天然质粒可以划分为6个进化关系亲密的家族、2个进化形态特殊的杂合质粒和1个独立进化质粒pLP2140。杂合质粒pMRI5.2、pLP12-1分别由家族1-2和5-6质粒融合形成,因此植物乳杆菌质粒可能起源于7个祖先。其次,基因组共线性分析可以将6个家族质粒进一步划分为17个进化关系更近的亚家族类群,并清晰、有效地揭示类群内质粒之间的系统进化关系。最后,基因组GC含量和宿主范围分析为植物乳杆菌质粒的系统进化关系和起源提供了进一步的证据。【结论】因此上述研究可以准确、有效地揭示植物乳杆菌天然质粒的系统进化关系和起源,这对植物乳杆菌天然质粒系统进化和起源的了解和研究具有重要的参考价值。通过Rep系统进化树和基因组共线性两种分析方法优缺点的比较和组合,我们提出了一种更加有效的研究思路和分析方法,同时这种方法很可能适用于所有细菌天然质粒,因此对于天然质粒进化和起源研究具有普遍的方法学意义。     

仿刺参(Apostichopus japonicus)肠道源植物乳杆菌(Lactobacillus plantarum) HY21的生长及益生特性分析

【目的】在仿刺参(Apostichopus japonicus)健康养殖中为了寻找具有良好耐受性、益生性、安全性的益生菌,本研究从仿刺参肠道内容物中分离获得一株植物乳杆菌(Lactobacillus plantarum) HY21,对其益生潜能进行评价。【方法】利用摇瓶发酵培养、应用环境因子模拟试验、抗生素药敏测试等方法,分析L. plantarum HY21的生长特性、产酸性能、发酵液的抗氧化性质和对水产致病菌的抑制作用;检测菌体的疏水性、自聚性和共聚性、黏附力和药物敏感性,以及对应用环境因子的耐受性。【结果】L. plantarum HY21摇瓶发酵培养温度30℃、初始pH 8.0,于2-10 h为对数生长期,发酵18 h后pH达到最低3.6;发酵液对溶藻弧菌的抑菌直径达到(13.96±0.30) mm,对1,1-二苯基-2-三硝基苯肼(1,1-diphenyl-2-trinitrophenylhydrazine, DPPH)自由基清除率达到95.45%±1.56%;L. plantarum HY21的疏水率为60.42%±2.78%、自聚率为22.69%±1.36%,与溶藻弧菌共聚率为27.98%±1.45%;对体表和肠道黏液蛋白的黏附量分别达到(1.66±0.01)×10⁶ CFU/mL和(1.23±0.15)×10⁶ CFU/mL;对13种常见的抗菌药物均表现敏感;菌体在模拟胃肠液(pH 3.0, pH 6.8)中孵育3 h存活率均可达99%以上,在10%鱼胆汁溶液中孵育3 h存活率达到68.11%±7.98%,在3%海盐溶液中孵育16 h存活率达到97.58%±7.14%。【结论】L. plantarum HY21具有良好的定殖作用、抑菌作用、抗氧化作用等益生特性,而且在应用环境中具有高存活率和高安全性,可以作为一株新的水产益生菌,为开发水产益生菌制剂提供科学理论依据。     

植物乳酸杆菌对小鼠草酸钙结石的干预效果

【背景】草酸钙结石是一种临床常见且易复发的疾病,由于结石质地坚硬,只能通过外科手术的方法治疗,给患者带了很大的痛苦。已有研究证实,肠道菌群可影响草酸钙结石的形成,降低草酸钙结石的发病率。【目的】探究植物乳杆菌对小鼠草酸钙结石的干预效果。【方法】体外实验：在MRS培养基中加入0.02 mol/L草酸钠,制备菌株筛选培养基（MRS-OX）。接种200μL的3.48×10¹²CFU/L植物乳杆菌悬液至MRS-OX制备含菌培养基（B+MRS-OX）。将等体积MRS-OX和B+MRS-OX于37°C恒温培养2 d,测剩余草酸浓度。体内实验：以10周龄雄性昆明小鼠为实验动物,随机分为对照组、植物乳杆菌组、结石组和植物乳杆菌干预组,每组5只小鼠。通过乙醛酸诱导小鼠建立草酸钙结石模型,并给予200μL的3.48×10¹²CFU/L植物乳杆菌进行干预治疗以观察其预防小鼠草酸钙结石的效果。实验结束后,绘制各组小鼠平均体重变化趋势图并计算小鼠肾脏脏器指数,检测每只小鼠血液学指标和氧化应激指标总超氧化物歧化酶（superoxide dismutase,SOD）和丙二...     

不同来源植物乳杆菌基因组结构和功能差异的比较研究

[目的] 本试验研究不同来源植物乳杆菌（Lactobacillus plantarum）基因特点以及在不同环境下其基因多样性,探究2株L.plantarum A8和P9在肠道生境及植物表面适应性的异同,为优良菌株的开发提供理论基础。[方法] 本研究对从动物肠道和植物表面分离获得的L.plantarum A8和L.plantarum P9的基因组进行分析,利用第二代测序技术（NextGeneration Sequencing,NGS）,基于Illumina NovaSeq测序平台,同时利用第三代单分子测序技术,基于PacBio Sequel测序平台,对L.plantarum A8和L.plantarum P9进行测序。采用Carbohydrate-active enzymes（CAZy）、Koyto encyclopedia of genes and genomes（KEGG）和Clusters of orthologous genes（COG）数据库对基因组进行功能注释;采用CGView软件绘制菌株的基因组环形图谱。应用比较基因组学与已经公开发表的其他L.plantarum基因组进行比较分析。[结果] 由研究可知L.plantarum A8和L.plantarum P9基因组大小存在差异,通过构建系统发育树发现2株菌与其他来源的L.plantarum分在同一分支,并且L.plantarum P9与母乳来源的L.plantarum WLPL04菌株距离最近,而L.plantarum A8与L.paraplantarum DSM10667距离最近。通过基因家族分析可知,2株菌共有基因为2643个,其中包括一些抗应激蛋白如热休克蛋白、冷休克蛋白。L.plantarum A8和P9独特基因分别为321和336个,L.plantarum A8中独特基因主要参与DNA复制、ABC转运系统（ABC transfer system）、PTS系统（phosphotransferase system）、磺酸盐转运系统、氨基酸生物合成等代谢通路;L.plantarum P9的独特基因以参与碳水化合物的运输和代谢基因居多,例如rpiA基因、lacZ基因、FruA基因等。[结论] 通过比较基因组学方法解析L.plantarum的基因组信息,发现动物肠道来源的L.plantarum具有较好的氨基酸转运能力,植物表面附着的L.plantarum菌株具有较好碳水化合物利用能力,从而为益生菌的开发与利用提供理论依据。     

植物乳杆菌培养上清对不同血清型沙门氏菌的抑制效果及作用机理

【目的】探究植物乳杆菌培养上清(Lactobacillus plantarum culture supernatant,LPC)对3种血清型沙门氏菌猪霍乱(Salmonella cholerae,SC)、肠炎(Salmonella enteritidis,SE)和鸡白痢(Salmonella pullorum, SP)的生长和致病性的抑制作用效果及机理。【方法】将2%LPC与3种沙门氏菌分别共培养后,采用比浊法及牛津杯抑菌圈试验检测沙门氏菌生长情况及LPC中的主要抑菌物质,使用实时荧光定量PCR (quantitative real-time polymerase chain reaction, qRT-PCR)探究沙门氏菌致病性相关基因表达水平,最后通过结晶紫染色法检测沙门氏菌的生物被膜。【结果】2%LPC能够显著抑制3种沙门氏菌的生长,其作用效果与庆大霉素(gentamicin, GM)相近且对SE的生长抑制效果优于GM,其主要抑菌物质为有机酸;2%LPC对3株沙门氏菌SPI-1编码的主要毒力基因(InvA、InvF、SopE、SopB、SipB、HilA和SipA)、SPI-2毒...     

Characterization of a cryptic plasmid pPZZ84 from Bacillus pumilus

The complete nucleotide sequence of a cryptic plasmid pPZZ84 from Bacillus pumilus strain ZZ84 was determined. Plasmid pPZZ84 is 6817 bp long with GC content of 36.7%. Seven putative open reading frames were identified. ORF7 shows 91% and 90% amino acid identity with rep proteins of pSH1452 and pPL1, respectively, members of rolling-circle replication (RCR) pC194-family. A typical pC194-family double strand origin (dso), a single-stranded origin (sso) and rap (regulator aspartate phosphatase) proteins were also identified in the plasmid. These results imply that pPZZ84 belongs to the Bacillus subtilis species group of small rolling circle (BsSRC) replicating plasmids. The plasmid copy number of pPZZ84 in B. pumilus ZZ84 was estimated to be 46 per cell, more than that of other BsSRC plasmids in their hosts.     

植物乳杆菌胞外多糖包覆的高稳定性硒纳米颗粒的制备及其抗氧化活性的研究*

目的:以植物乳杆菌胞外多糖(EPS)作为稳定剂和包覆剂,安全、简便地制备高稳定性胞外多糖-纳米硒复合物(E-SeNPs),并研究其稳定性和抗氧化活性。方法:将植物乳杆菌胞外多糖引入亚硒酸钠与抗坏血酸的反应体系中,室温合成E-SeNPs。采用透射电子显微镜(TEM)、动态光散射(DLS)、紫外可见光谱(UV-vis)和傅里叶变换红外光谱(FT-IR)等技术对E-SeNPs的尺寸、形貌、结构及稳定性进行研究。此外,通过检测E-SeNPs的还原能力、ABTS⁺的清除率评估其体外抗氧化活性。结果:制备了具有良好分散性、稳定性的E-SeNPs,其平均粒径为(45.17±11.9)nm,带负电荷(-31.3mV)。同时,由于包覆作用,该E-SeNPs在水溶液中可稳定存在20天。最后,相同浓度下,E-SeNPs的还原力、ABTS⁺清除率都明显高于EPS和硒纳米颗粒(SeNPs),表现出了良好的抗氧化活性。结论:获得了一种新型的SeNPs稳定剂和包覆剂,简便、安全地制备了高稳定性、水分散性良好且具有良好抗氧化活性的SeNPs。     

植物乳杆菌胞外多糖包覆的高稳定性硒纳米颗粒的制备及其抗氧化活性的研究*

目的:以植物乳杆菌胞外多糖(EPS)作为稳定剂和包覆剂,安全、简便地制备高稳定性胞外多糖-纳米硒复合物(E-SeNPs),并研究其稳定性和抗氧化活性。方法:将植物乳杆菌胞外多糖引入亚硒酸钠与抗坏血酸的反应体系中,室温合成E-SeNPs。采用透射电子显微镜(TEM)、动态光散射(DLS)、紫外可见光谱(UV-vis)和傅里叶变换红外光谱(FT-IR)等技术对E-SeNPs的尺寸、形貌、结构及稳定性进行研究。此外,通过检测E-SeNPs的还原能力、ABTS⁺的清除率评估其体外抗氧化活性。结果:制备了具有良好分散性、稳定性的E-SeNPs,其平均粒径为(45.17±11.9)nm,带负电荷(-31.3mV)。同时,由于包覆作用,该E-SeNPs在水溶液中可稳定存在20天。最后,相同浓度下,E-SeNPs的还原力、ABTS⁺清除率都明显高于EPS和硒纳米颗粒(SeNPs),表现出了良好的抗氧化活性。结论:获得了一种新型的SeNPs稳定剂和包覆剂,简便、安全地制备了高稳定性、水分散性良好且具有良好抗氧化活性的SeNPs。