Diets and trophic guilds of small fishes from coastal marine habitats in western Taiwan

The diets and trophic guilds of small fishes were examined along marine sandy beaches and in estuaries at depths <1·5 m in western Taiwan, Republic of China. Copepods were the most frequently identified item in fish guts, indicating they are key prey for the fish assemblages studied. Piscivore, crustacivore, detritivore, omnivore, zooplanktivore and terrestrial invertivore trophic guilds were identified. The zooplanktivore guild contained the most fish species. Maximum prey size consumption was positively correlated with standard length (L_S) in seven species and at the assemblage level and negatively correlated with L_S in a single detritivorous species. The diet data and trophic guild scheme produced by this study contribute to an understanding of coastal marine food webs and can inform ecosystem‐based fisheries management.     

Seasonal and spatial variations of fish trophic guilds in a shallow,semi-enclosed tropical estuarine bay

A study on seasonal and spatial variations of feeding habits and trophic guilds of dominant fish species in Pattani Bay during March 2003 to February 2004 was aimed at classifying diet composition, identifying dominant food components of each species, categorizing trophic guilds of the community and evaluating effects of habitat characteristics and seasonality on guild organization. Most fishes showed high food intake, fed on a diverse range of food items but relied heavily on calanoid copepods and shrimps. All species, with the exception of Epinephelus coioides, were classified as specialist feeders. Four main dietary guilds were classified. Three of these were classified as the guilds dominated by at least two major food items. Significant variations in trophic guilds of 28 fish species based on habitat types and seasons were also identified. They could be divided into three seasonal groups and three site-groups and a single site. Trophic organization for each season and habitat ranged from two to four groups. This information identifies groups of fishes that seasonally and spatially utilize different food resources within a semi-enclosed estuarine bay ecosystem.     

Diets and trophic‐guild structure of a diverse fish assemblage in Chesapeake Bay,U.S.A.

Dietary habits and trophic‐guild structure were examined in a fish assemblage (47 species) of the Chesapeake Bay estuary, U.S.A., using 10 years of data from >25 000 fish stomachs. The assemblage was comprised of 10 statistically significant trophic guilds that were principally differentiated by the relative amounts of Mysida, Bivalvia, Polychaeta, Teleostei and other Crustacea in the diets. These guilds were broadly aggregated into five trophic categories: piscivores, zooplanktivores, benthivores, crustacivores and miscellaneous consumers. Food web structure was largely dictated by gradients in habitat (benthic to pelagic) and prey size. Size classes within piscivorous species were more likely to be classified into different guilds, reflecting stronger dietary changes through ontogeny relative to benthivores and other guilds. Relative to predator species and predator size, the month of sampling had negligible effects on dietary differences within the assemblage. A majority of sampled fishes derived most of their nutrition from non‐pelagic prey sources, suggesting a strong coupling of fish production to benthic and demersal food resources. Mysida (predominantly the opossum shrimp Neomysis americana) contributed substantially to the diets of over 25% of the sampled predator groups, indicating that this species is a critical, but underappreciated, node in the Chesapeake Bay food web.     

Feeding habits and seasonal trophic guilds structuring fish community in the bay mouth region of a tropical estuarine habitat

Understanding trophic relationships of fish in estuarine ecosystem is an important element for sustainable resource management. This study examined the feeding habits of 29 dominant fish species, characterized the trophic guilds, assessed the impact of season and clarified the role of diets in structuring the fish community in the mouth region of Pattani Bay, Thailand. Samples of 5792 fishes collected monthly by gillnets from March 2019 to February 2020 were used for stomach content analyses. It was found that the number of food types and fullness index differed between fish taxa (P < 0.001). Most fishes were specialist feeders feeding on specific food components and were categorized into five trophic guilds: piscivore, shrimp-fish feeder, polychaete feeder, zooplanktivore and planktivore. Six species were piscivorous, considered as apex predators, that fed almost entirely on fishes. High diet overlaps among some species (>0.6) were recorded. Not much variation in seasonal guilds was observed: four guilds in the dry season, three in the moderate rainy season and four in the rainy season. Some species remained in the same guild the whole year round, but some fishes changed seasonally. Two fish communities from different regions of the bay were segregated based on feeding habits. The inner bay community comprised mainly copepod and plankton feeders, but there were more piscivores in the deeper bay mouth area. Results from this study help us to understand the feeding habits and trophic guilds of dominant fish species at the mouth of this tropical estuarine bay.     

Diet composition and trophic guild structure of fish assemblage in headwaters of the Chishui River,a tributary of the upper Yangtze River,China

In this study, the diet composition and trophic structure of the fish assemblage in the headwaters of the Chishui River were investigated. A total of 1677 fish specimens belonging to 14 species were collected and dissected. Of these specimens, 1063 individuals with undigested food in their stomachs or guts were used for analysis. Our analysis identified thirty-one kinds of prey, which were classified into eight categories, namely, diatoms, chlorophytes, other vegetable prey, aquatic insects, mollusks, other invertebrates, fishes, and unidentified organic matters. Among these categories, diatoms were the most important prey for this fish assemblage. With an ontogenetic dietary shift, the 14 species were subdivided into 16 predator groups, which were categorized into five trophic guilds, namely, algivore (diatoms), algivore (chlorophytes), omnivore, aquatic insectivore, and piscivore. Their diet composition significantly differed from one guild to another (p?<?0.05), and an evident overlap was observed in the diet spectrum between predator group in the algivore (diatoms) guild. These results suggested that autochthonous organic carbon was an important nutrient source for the fish assemblage in the headwaters of the Chishui River rather than allochthonous nutrients. For the protection of the fish resources, conservation efforts on the river substratum and the riparian zone in the headwaters of the Chishui River should be prioritized because these places are the main nutrient sources.     

Trophic structure of a coastal fish community determined with diet and stable isotope analyses

A combination of dietary guild analysis and nitrogen (δ¹⁵N) and carbon (δ¹³C) stable‐isotope analysis was used to assess the trophic structure of the fish community in Rhode Island and Block Island Sounds, an area off southern New England identified for offshore wind energy development. In the autumn of 2009, 2010 and 2011, stomach and tissue samples were taken from 20 fish and invertebrate species for analysis of diet composition and δ¹⁵N and δ¹³C signatures. The food chain in Rhode Island and Block Island Sounds comprises approximately four trophic levels within which the fish community is divided into distinct dietary guilds, including planktivores, benthivores, crustacivores and piscivores. Within these guilds, inter‐species isotopic and dietary overlap is high, suggesting that resource partitioning or competitive interactions play a major role in structuring the fish community. Carbon isotopes indicate that most fishes are supported by pelagic phytoplankton, although there is evidence that benthic production also plays a role, particularly for obligate benthivores such as skates Leucoraja spp. This type of analysis is useful for developing an ecosystem‐based approach to management, as it identifies species that act as direct links to basal resources as well as species groups that share trophic roles.     

Guild structure of carnivorous intertidal fishes of the Chilean coast: implications of ontogenetic dietary shifts

Although ontogenetic changes in resource use within species are common in animals, these changes have not been widely considered in studies of guild structure within communities. The occurrence of one or more shifts in resource use in an individual of a given species during its life should mean that it would also belong to different guilds at different life stages. We specifically addressed this issue by describing the feeding habits of ten species of carnivorous fishes occurring in tidepools in rocky intertidal areas along the coast of central Chile. Most of these species undergo clear ontogenetic dietary shifts and a feeding guild structure of this group of fishes was established that takes these dietary shifts into account. Each species was divided into a number of size classes. Dietary overlap values between both intraspecific and interspecific size-class pairs in the entire group of ten species were used to construct a phenogram of dietary similarity through an UPGMA cluster analysis. Numbers of guilds and their memberships were established objectively by applying a bootstrapping procedure. Four “ontogenetic” feeding guilds (OFGs), each consisting of size-classes of species, were recognized. The majority of species belonged to more that one guild. Interestingly, when the bootstrapping procedure was applied to a phenogram based on the diets of “taxonomic” or complete species, only one significant guild was found. The implications of these ontogenetic dietary shifts for interspecific interactions are substantial because the identity of the species with which each fish species shares resources change through their lives. The usefulness of taxonomic species for investigating potential competitive interactions in this assemblage is greatly undermined. Received: 26 September 1997 / Accepted: 15 December 1997     

Feeding guild structure of a rocky intertidal fish assemblage in central Chile

The identification and analysis of the guild structure of vertebrate assemblages has played a fundamental role in the understanding of the underlying mechanisms responsible for their community organization and structuring. This approach generally has not been undertaken for temperate water intertidal fish assemblages. In central Chile, fishes are important components of the intertidal community, but no studies attempting to understand their organization and structuring have been done. In the present study, the diets of 13 of the most abundant species which inhabit tidepools in the rocky intertidal zone of central Chile were determined. A total of 660 fishes was collected at 5 sites: Los Molles, Con-Cón, Quintay, El Tabo, and Las Cruces. Dietary overlap between all species pairs was calculated and a phenogram of dietary similarity was constructed and analyzed using a bootstrapping technique to objectively determine guild membership. The results showed that the intertidal fish assemblage of central Chile can be divided into three feeding guilds: two guilds consisting of carnivorous species and one guild of omnivorous and herbivorous species. The possible causes and implications of the resulting guild structure and the potential effects of predation by these fishes on other components of the intertidal community are discussed.     

Relating Species and Community Dynamics in an Heavily Exploited Marine Fish Community

We examined the dynamics of fish species and how they relate to species assemblage coherence in the heavily exploited Georges Bank fish community. Coherence is defined as reduced temporal variability of total assemblage biomass. We assumed that a higher degree of compensation hence coherence occurs within competitively coupled species assemblages; therefore, fisheries may directly alter the dynamics of certain targeted species sizes but assemblage structure will be relatively more stable owing to compensatory interactions. Species-sizes were grouped, based on negative covariance coupling in biomass time series from survey data. Assemblages representing benthic feeders were clearly identified by this method; furthermore, the most heavily exploited species-sizes were decoupled from other species-sizes suggesting that fisheries have diminished their potential to compensate or to be compensated for by competitive interactions. Biomass of species-sizes within known trophic guilds strongly compensated other guild-member biomass fluctuations if the diet of guild members was more specialized. This is an indication that more competitive conditions (more specialization) foster greater compensatory responses between competitors biomass fluctuations.     

Effects of species vs. functional diversity: Understanding the roles of complementarity and competition on ecosystem function in a tropical stream fish assemblage

The positive effects of biodiversity on the functioning of ecosystems are well demonstrated in laboratory microcosms but the precise mechanisms underlying higher ecosystem process rates in natural assemblages are less well understood. We investigated, under semi-natural conditions (field enclosures), the potentially interactive effects of species identity and trophic function (i.e., feeding guild) on consumer growth, using a fish assemblage in a tropical stream. We tested the relative importance of species identity and trophic function on consumer growth by placing 2 fish of either (i) the same species, (ii) different species but of similar trophic function, or (iii) different species of different trophic functions in each of 72 stream enclosures for 48 days and measuring biomass change, individual diet composition and behavior. We predicted that if functional diversity had a larger impact than species diversity, then fish growth would be highest for pairs of species from different functional groups (i.e., those with the highest diet complementarity), intermediate for different species within a guild, and lowest for the same species (those with the lowest complementarity and highest niche overlap), such that functional variation between species in different guilds would exceed functional differences within guilds. Our results show that functional heterogeneity rather than species diversity per se had the greatest impact on food resources used complementarily, leading to higher biomass accrual. Mechanistically, higher growth rates were driven by concomitant increases in resource intake and reductions in antagonistic interactions. Together, these results underscore the importance of functional diversity on macroconsumer production in natural assemblages.     

Microhabitat use in a stream fish assemblage

We examined microhabitat use among fishes in a 37-m section of Coweeta Creek, North Carolina. Numerical abundances of species changed substantially during the 17-month study period. Microhabitat availability, however, did not change markedly during our investigation. Seasonal principal component analyses of microhabitat availability and fish microhabitat use data extracted two main patterns of non-random microhabitat use. Clinostomus funduloides, Notropis eoccogenis and Semotilus atromaculatm were significantly over-represented in deep areas with low to intermediate velocities and depositional substrata. Campostoma oligolepis, Coitus bairdi, Etheostoma blennioides, Rhinichthys cataractae and Salmo gairdneri all occurred in intermediate to deep microhabitats with moderate to high velocities and erosional substrata. Five of seven species exhibited seasonal variation in microhabitat utilization, whereas six species displayed size-related variation in use. Size-related variation was probably ontogenetic. We attributed most seasonal changes in microhabitat use to variations in microhabitat availability.
We used canonical analysis of discriminants to identify factors maximizing interspecific differences in microhabitat use. This analysis indicated that species could be assigned to either a benthic or a water column guild. Species within a guild generally could not be differentiated statistically, whereas members of different guilds were readily separable. These patterns persisted throughout the study, despite changes in numerical abundances of assemblage members. There was no evidence of either exploitation or interference competition for microhabitat, consequently it is unlikely that spatial resources were limiting during our study.     

Feeding patterns of the dominant benthic and demersal fish community in a temperate estuary

The diet and feeding relationships of the 12 most abundant benthic and demersal fish species of the Mondego Estuary, Portugal, were studied between June 2003 and May 2006. Fishes were caught during the night using a 2 m beam trawl. The stomach contents were analysed for prey identification, counting and weighing. According to prey importance in diets, three main feeding guilds were identified: (1) invertebrate feeders, (2) invertebrate and fish feeders and (3) plankton and invertebrate feeders. Besides these main feeding guilds, some fishes also presented fractions of algae and zooplankton in their stomach contents. The most abundant prey items were macroinvertebrates, with several polychaetes ( Nephtys spp., Capitellidae, Spionidae and Eunicidae), Corophium spp. and Crangon crangon among the dominant prey. Pomatoschistus spp. were the most preyed on fishes. Several fish species showed a tendency for a specialized diet, but almost all also showed some degree of opportunistic feeding by preying on other food resources. High diet overlap was found between some fish species, yet exploitative competition could not be concluded.     

Fish feeding guilds in shallow rocky and soft bottom areas on the Swedish west coast

Multivariate analyses of the diet relationships within fish assemblages resulted in the recognition of five major feeding guilds in shallow (0-9 m) rocky- and soft-bottom habitats on the Swedish west coast. The two habitats had similar guilds that could be broadly described as piscivores, decapod feeders, copepod feeders and amphipod and mollusc feeders. The last guild on the rocky bottom was more strictly one of amphipod feeders, whereas the last guild on soft bottoms consisted of infauna feeders (mainly polychaetes and bivalves). A comparison of the diet of the entire fish assemblages showed that amphipods and gastropods were more prevalent as prey taxa on rocky bottoms, whereas bivalves and teleosts were more common on soft bottoms. A large proportion (12 out of 27 species) of the fish species investigated was found in both habitats. These fish species generally seemed to rely on the same major prey groups in the two habitats, but also included prey taxa characteristic for the habitat in which they resided. Sea trout Salmo trutta , mackerel Scombrus scombrus , saithe Pollachius virens , whiting Merlangius merlangus and cod Gadus morhua were found to be the major piscivores in both the investigated habitats. Herring Clupea harengus and members of the family gobiidae were the most prevalent prey species for piscivores within the rocky- as well as the soft-bottom fish assemblage. A comparison of feeding modes suggested that the fish assemblage on rocky bottoms predominantly (60% of the food items) relied on food found in vegetation. On soft bottoms, the average distribution of food categories among fish species was 44% benthic, 35% pelagic and 21% vegetation-associated food items.     

Trophic Structure of One Deep-sea Benthic Fish Community in the Eastern Canadian Arctic: Application of Food, Parasites and Multivariate Analysis

Synopsis As new arctic marine fisheries develop there is need for a comprehensive ecosystem approach to long-term management. This approach recognizes the importance of community interactions such as food web structure and trophic patterns. We determined whether hierarchical clustering (guild formation) is an effective method of trophic evaluation in deep-sea Artic fish communities using stomach content and parasite data with size class, and evaluated the application of endohelminth communities (parasite species transmitted in the food) as indicators of trophic status. Cluster analysis using food group abundance with size class of fish revealed the presence of 11 guilds within the community, however the same analysis using parasite data showed little correlation between food and parasites. Redundancy analysis (RDA) within the 11 guilds also revealed no significant correlations between food group and parasite abundance suggesting that this type of ordination is not suited for environments containing mainly generalist feeders. RDA of individual taxa without a priori guild designation found that taxa in benthic deep-sea communities are defined by their ability to exploit prey species in more than one habitat zone. Benthic fish species were significantly correlated with benthic food groups and parasites that utilize benthic intermediate hosts whereas benthopelagic–pelagic species fed on a higher diversity of prey species and were infected by a larger number of non-host specific parasites. Eigenanalysis and Monte Carlo results showed that parasites and food groups are highly correlated, indicating that parasite community analysis is an effective tool for predicting feeding strategies in Arctic marine environments. It also suggests that in most cases endoparasite infections alone could be used for trophic evaluation in the absence of stomach content data.     

Response of fish-based metrics to anthropogenic pressures in temperate rocky reefs

The increasing degradation of marine ecosystems as a result of increasing impact caused by anthropogenic pressures, urges for well-founded knowledge to develop efficient tools to appraise the quality status of fish assemblages, as required by the “Marine Strategy Framework Directive”. This study analyzed the structural and functional response of rocky fish assemblages to several pressures on the Portuguese coast, i.e. fishing, sewage discharges, port activities and thermal effluent, by selecting fish-based metrics that best distinguished disturbed from control areas. One of the novel aspects of this research is the integrated assessment made through the analysis of several metrics representing numerous attributes of fish assemblages (namely diversity, abundance, trophic structure, mobility, resilience, habitat association, nursery function), which contrasts with the most commonly used approaches that in general focus on fish species/families. PERMANOVA results showed significant differences on metrics composition for all pressures with the exception of the thermal effluent. Moreover, two major patterns of stress were identified: (1) selective pressure, which affects differentially the fish assemblages (fishing); (2) broad-range pressure, which affects the entire fish assemblage with metrics of several attributes (e.g. structure, resilience, trophic guilds, nursery function) responding to its presence (sewage discharges, port activities). Taking into account the sensitivity results (discriminant analysis and Mann–Whitney test), biological meaning and redundancy with other metrics (Spearman correlations), the following metrics were selected as the most suitable to detect changes on temperate reef fish assemblages: “density of generalist individuals”, “density of territorial individuals”, “density of large individuals with medium to high commercial value (>20 cm)”, “density of juveniles” and metrics relative to trophic guild (except zooplanktivores). Since metrics grouped species that have some degree of functional overlap, the present approach was useful to understand human-induced changes at the assemblage level, contributing for the future use of marine fishes as biological indicators.     

Co-occurrence Patterns in Carnivorans: Correspondence Between Morphological and Ecological Characteristics of an Assemblage of Carnivorans in Patagonia

We searched for correspondence between morphology and trophic habits in an assemblage of six species of coexisting carnivorans from Patagonia to confirm the predictive power of the study of the trophic morphology as an approach to the study of resource partitioning, which is often utilized in paleontological studies. The six species were assigned to four morphoguilds and to four trophic guilds, although the species composition of both spaces was only coincident during one of the two studied time periods. The most obvious explanation for this lack of correspondence is based on the assumption that species can change from one ecological guild to another, while their relative positions in the morphospace will be fixed. Therefore, the observed lack of correspondence could be searched in the context of differences between the ecological and evolutionary scales. Although morphological specialization toward some type of diet has been corroborated in our assemblage, the inference of interactions in ecological time among species from the past from its morphology must be considered with caution.     

The feeding ecology of freshwater fishes in two rivers of the Australian wet tropics

Synopsis The fish fauna of the Mulgrave and South Johnstone rivers is diverse relative to other Australian rivers and this study examines the diets of many of the resident fish species. Most species were small (< 200 g), and although considerable overlap in the size of the mouth was observed, closely related species tended to have non-overlapping ranges in mouth size. Five trophic guilds were recognised and substantial discrimination between guilds on the basis of body size was noted. Small fishes (< 5 gm body weight) consumed a variety of insect larvae and small terrestrial insects. The diet of large fish was characterised by the presence of large aquatic invertebrates and fish. A third group of intermediate sized fishes (10–20 gm), which included the 0+ age class of three species of large fish, also consumed aquatic invertebrates but only a small proportion of terrestrial invertebrates. Vegetable material was present in the diet of all three guilds but the source of that material varied. In groups 1 to 3 above, the source of that material was desmids and diatoms, aquatic macrophytes or filamentous alga respectively. A fourth guild fed predominately on detritus and some bivalve molluscs, and a fifth group, containing only two species, fed feavily on gastropod molluscs. The extent of dietary overlap varied both within- and between-rivers. In habitats dominated by low water velocities and sandy substrates, resource partitioning was pronounced and the number of fishes with empty or near empty guts was high, suggesting that food was more limited in this type of habitats. Little resource partitioning was observed in habitats characterised by a coarse substrate, high water velocity and dense riparian canopy.     

Delineating reef fish trophic guilds with global gut content data synthesis and phylogeny

Understanding species’ roles in food webs requires an accurate assessment of their trophic niche. However, it is challenging to delineate potential trophic interactions across an ecosystem, and a paucity of empirical information often leads to inconsistent definitions of trophic guilds based on expert opinion, especially when applied to hyperdiverse ecosystems. Using coral reef fishes as a model group, we show that experts disagree on the assignment of broad trophic guilds for more than 20% of species, which hampers comparability across studies. Here, we propose a quantitative, unbiased, and reproducible approach to define trophic guilds and apply recent advances in machine learning to predict probabilities of pairwise trophic interactions with high accuracy. We synthesize data from community-wide gut content analyses of tropical coral reef fishes worldwide, resulting in diet information from 13,961 individuals belonging to 615 reef fish. We then use network analysis to identify 8 trophic guilds and Bayesian phylogenetic modeling to show that trophic guilds can be predicted based on phylogeny and maximum body size. Finally, we use machine learning to test whether pairwise trophic interactions can be predicted with accuracy. Our models achieved a misclassification error of less than 5%, indicating that our approach results in a quantitative and reproducible trophic categorization scheme, as well as high-resolution probabilities of trophic interactions. By applying our framework to the most diverse vertebrate consumer group, we show that it can be applied to other organismal groups to advance reproducibility in trait-based ecology. Our work thus provides a viable approach to account for the complexity of predator–prey interactions in highly diverse ecosystems.

The diversity of life on our planet has produced a remarkable variety of biological traits that characterize different species, and such traits are widely considered an alternative to taxonomy to increase our understanding of biodiversity and ecosystem functioning. This study presents an unbiased and fully reproducible framework to delineate trophic guilds in reef fishes.     

Community structure of a Neotropical bat fauna as revealed by stable isotope analysis: Not all species fit neatly into predicted guilds

Neotropical bat communities are among the most diverse mammal communities in the world, and a better understanding of these assemblages may permit inferences about how so many species coexist. While broad trophic guilds (e.g., frugivore, insectivore) of bats are recognized, details of diet and similarities among species remain largely unknown. We used stable isotope ratios of carbon (δ¹³C) and nitrogen (δ¹⁵N) to characterize the community structure of a diverse Neotropical bat fauna from Belize to test predictions of niche theory and the competitive exclusion principle. We predicted that (1) interspecific variation in isotopic overlap would be greater within guilds than between guilds, and (2) no two sympatric populations would have isotopic niches that overlap completely, unless there is variation along some other axis (e.g., temporal, spatial). We additionally tested body size as an explanatory metric of potential overlap and predicted that larger‐bodied animals would have greater niche breadths. Results suggest that while guild‐level characterizations of communities are at least somewhat informative, there are multiple examples of intra‐ and inter‐guild species pairs with significantly overlapping isotopic niches, suggesting that, counter to predictions, they may compete for resources. Understanding the trophic structure of animal communities is fundamental to conservation and management of endangered species and ecosystems and important for evolutionary studies, and stable isotope analyses can provide key insights as well as informing hypotheses of the diet of species that are not well known. Abstract in Spanish is available with online material.