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1.
In order to determine the degree of correspondence between sets of multivariate observations based on different kinds of traits, two new methods, derived from fundamentally different notions of “correspondence,” are adopted here and compared. Using networks or trees to represent contemporary relationships, the first method tests the similarity of the cluster or hierarchic structures implicit in two sets of data. The second approach tests the departure from perfect geometric congruence or superimposability. Computer simulation was used to generate the distributions needed for significance tests under the null hypothesis. By the first technique, we find significant correspondence among the cluster structures for geographic, allele frequency, and anthropometric data on 19 Yanomama Indian villages. The results are similar and more precise for a subset consisting of seven villages. Some of these results differ from the conclusions which would be reached with the conventional correlations based upon entries in distance tables. The direct test of congruence, used only for the data on the subset of seven villages, gives results which differ substantially from those based on cluster-structure. There are, however, similarities between the measure of congruence and the simple correlations based on entries in the distance tables. The significant correspondences observed call for some explanation. Cultural and demographic features determine the particular non-random allocation of individuals to village fragments when a village splits. These social phenomena are invoked in tentative explanation of the agreement among historical, biological, and geographic relationships of villages.  相似文献   

2.
In a series of publications beginning in the 1960s, Neel and colleagues suggested that genetically nonrandom, or "lineal", population fissions contributed to genetic structure in ancient human groups. The authors reached this conclusion by studying the genetic consequences of village fissions among the Yanomamo, a Native South American group thought to have been relatively unaffected by European contact and, therefore, representative of the human past. On the basis of ethnographic accounts and pedigree data, they further concluded that patrilineal relationships were particularly important in shaping the genetic structure of villages following fissions. This study reexamines the genetic consequences of village fissions using autosomal STRs, Y-chromosome STRs, and mitochondrial DNA sequences collected from large samples of individuals from multiple Yanomamo villages. Our analyses of the autosomal STRs replicate the previous finding that village fissions have produced substantial genetic structure among the Yanomamo. However, our analyses of Y-chromosome STRs and mtDNA d-loop polymorphisms suggest that other population processes, including village movements, inter-village migration, and polygynous marriage, affect genetic structure in ways not predicted by a simple model of patrilineal fissions. We discuss the broader implications of population fissions for human evolution and the suitability of using the Yanomamo as a model for the human past.  相似文献   

3.
Recent studies indicate that, whereas the Sardinian population as a whole is comparable to outbred populations for linkage disequilibrium (LD) mapping of common variants, LD in Sardinian sub-isolates is more extended, making these populations particularly suitable for this approach. To evaluate the extent of LD between microsatellite markers, we compared different sub-populations within Sardinia selected on the basis of their geographical position and isolation: two small isolated villages (Talana, Urzulei), two larger but remote areas (Ogliastra, Nuoro province) and a cohort of samples representing the wider Sardinian population. LD analysis was carried out by using six microsatellite markers that are located on Xq13.3 and that have been extensively studied in different populations. We found different extents and patterns of LD in the sub-population samples depending on their degree of isolation and demographic history. All LD measurements and haplotype analyses indicate that there is a decreasing trend from Talana (the most inbred population, LD up to 9.5-11.5 Mb) to the more outbred Sardinian population (LD only for intervals <2 Mb). In one village (Talana), five haplotype classes accounting for 80% of the entire sample perfectly matched five Ogliastra clusters, supporting the origin of the village from the Ogliastra genetic pool. In contrast, the other village (Urzulei) showed a different pattern of haplotypes with a closer relationship to the Nuoro region sub-population. LD analyses therefore show that even neighbouring isolate villages may differ in their genetic background. Here, we highlight the importance of selecting appropriate populations and/or sub-populations for the analysis of complex traits. Isolated sub-populations showing different extents of LD can provide a powerful method for mapping complex traits by LD scanning at relatively low marker density.  相似文献   

4.
In this paper we present the results of blood group typings for a total of 33 villages distributed among five South American Indian tribes--Yanomama (21 villages), Makiritare (eight villages), Macushi (two villages), Piaroa (one village), and Wapishana (one village). These new results for the Yanomama and Makiritare tribes have been combined with those previously reported to allow a better appreciation of the distribution of allelic frequencies in the tribes. The relationship of the Yanomama to other South American Indian tribes is investigated using data on six polymorphic loci (Rh, MNS, Fy, Jk, Di, Hp). By use of four genetic measures (two of genetic relationship and two of genetic diversity), we demonstrate that the Yanomama are genetically unique among a sample of 20 South American tribes. In addition, the Yanomama show somewhat less genetic diversity for the six loci analyzed than the average South American tribe. Taken together, these results indicate a rather long period of isolation for the population antecedent to the Yanomama--perhaps since the time of entry of man into the South American continent. The pattern of genetic relationships and genetic diversity for the 20 tribes is consistent with the hypothesis that evolution in South America proceeded by a process of fission-fusion leading to isolation of subpopulations with subsequent genetic differentiation as a consequence of population isolation. The uniqueness of the Yanomama appears to stem entirely from such a process, there being no evidence of any selective differential for the loci analyzed.  相似文献   

5.
In two previous papers Giles, Walsh and Bradley ('66) and Giles, Wyber and Walsh ('70) have shown that the inhabitants of three adjacent villages on the edge of the Markham Valley in New Guinea have significant heterogeneity in all blood group frequencies tested. The language, environment, culture, and ancestry of these people are essentially identical. The differences in the blood group frequencies were attributed to genetic drift and particularly to founder effect. In this paper the anthropometric data from these villages are analysed. Analysis of variance shows that 50% of the traits are significantly different. Multiple discriminant analysis demonstrates that the villages can be significantly separated morphologically. The heritability of each trait is determined using an analysis of within and among sibship variation. Traits with strong “genetic” components of variation and traits with strong “environmental” components contribute significantly to the morphological heterogeneity among the villages. Some speculations are presented on the cause of the “genetic” component of morphological variation.  相似文献   

6.
In family studies, phenotypic similarities between relatives yield information on the overall contribution of genes to trait variation. Large samples are important for these family studies, especially when comparing heritability between subgroups such as young and old, or males and females. We recruited a cohort of 6,148 participants, aged 14–102 y, from four clustered towns in Sardinia. The cohort includes 34,469 relative pairs. To extract genetic information, we implemented software for variance components heritability analysis, designed to handle large pedigrees, analyze multiple traits simultaneously, and model heterogeneity. Here, we report heritability analyses for 98 quantitative traits, focusing on facets of personality and cardiovascular function. We also summarize results of bivariate analyses for all pairs of traits and of heterogeneity analyses for each trait. We found a significant genetic component for every trait. On average, genetic effects explained 40% of the variance for 38 blood tests, 51% for five anthropometric measures, 25% for 20 measures of cardiovascular function, and 19% for 35 personality traits. Four traits showed significant evidence for an X-linked component. Bivariate analyses suggested overlapping genetic determinants for many traits, including multiple personality facets and several traits related to the metabolic syndrome; but we found no evidence for shared genetic determinants that might underlie the reported association of some personality traits and cardiovascular risk factors. Models allowing for heterogeneity suggested that, in this cohort, the genetic variance was typically larger in females and in younger individuals, but interesting exceptions were observed. For example, narrow heritability of blood pressure was approximately 26% in individuals more than 42 y old, but only approximately 8% in younger individuals. Despite the heterogeneity in effect sizes, the same loci appear to contribute to variance in young and old, and in males and females. In summary, we find significant evidence for heritability of many medically important traits, including cardiovascular function and personality. Evidence for heterogeneity by age and sex suggests that models allowing for these differences will be important in mapping quantitative traits.  相似文献   

7.
In this study, we used anthropometric data from six Andhra caste populations to examine heritability patterns of 23 anthropometric phenotypes (linear, craniofacial, and soft tissue measures) with special reference to caste differences. We obtained anthropometric data from 342 nuclear families from Brahmin, Reddy, Telaga, Nagara, Ag. Kshatriya, and Mala castes of Visakhapatnam, India. These caste groups represent the existing hierarchical stratification of Indian populations. We used a variance components approach to determine the heritability (h2) of these 23 anthropometric phenotypes (height, weight, BMI, etc.). The sample consisted of 1918 individuals ranging in age from 6 to 72 years (mean = 21.5, S.D. = 13.8). The heritabilities (h2 +/- S.E.) for all anthropometric traits for the entire sample were significant (p < 0.0001) and varied from 0.25 +/- 0.05 (BMI) to 0.61 +/- 0.05 (bizygomatic breadth) after accounting for sex, age, and caste effects. Since data on socioeconomic and nutritional covariates were available for a subset of families, we repeated the genetic analyses using this subset, which has yielded higher heritabilities ranging from 0.21 +/- 0.16 (head breadth) to 0.72 +/- 0.18 (nasal breadth). In general, craniofacial measurements exhibited higher h2 compared to linear measures. Breadth measurements and circumferences yielded more or less similar heritabilities. Age and sex effects were significant (p < 0.0001 ) for most of the traits, while the effects of caste, socioeconomic status, and nutritional status were inconsistent across the traits. In conclusion, anthropometric phenotypes examined in this study are under appreciable additive genetic influences.  相似文献   

8.
The paper deals with the distribution of genetic markers (systems ABO, Rh, Hp, PTC) and a number of phenotyping traits (folding of arms, hand clasping, tongue rolling, right- and left-handedness, the type of ear lobe, the types of dermatoglyphics patterns) in the inhabitants of 5 villages in the Pinezhsky district of the Arkhangelsky region of the RSFSR. The data presented in this work were obtained in the course of examination of over 900 persons. Among the systems analysed there was a statistically significant deviation from Hardy-Weinberg's equlibrium. It took place in two the least villages. In one case--for ABO blood groups, in another--for Hp system. There are an interesting fact of the excess of heterozygotes 2-1 and some excess of the group 0. Statistically significant differences between villages were shown for four genetic systems. Data on migrations, distribution of gene frequencies and estimated genetic and phenotype distances between villages of the same village community and between two communities suggest, that each village community can be considered as separate subdivided population. Considering the uniformity of the environmental pressure in the region examined, the heterogeneity of the population studied is apparently associated with a random genetic drift.  相似文献   

9.
With the aid of data of frequencies of genetically determined blood group systems, the authors have tried to show the basic ethno-genetic directional patterns in Southern Moldavia and in the Dniester-Carpathian-Danubian region in its entirety. Blood Groups A1A27B0, RHESUS, MN, and KELL have been determined in six random samples from four Gagauz villages (n = 330), one Moldavian village (n = 101) and one Bulgarian village (n = 96). The analysis of gene frequencies demonstrates genetic homogeneity of the total Gagauz population. Statistically reliable differentiation is observed only for the RHESUS system. It is possible now to suppose that the haemotological types of modern Gagauz and Bulgarian populations have been developed on the basis of the Balcanic serogenetic types, partially transformed under influence of gene flow from probably Central Asian or other eastern centers. The position of the Moldavians on the serogenetic map of Europe is less certain, due to a considerable ambiguity in the allele frequencies of the various blood group systems. Founder effects may account for these observations. However, the genetic distance and cluster analyses carried out on the frequencies of the surveyed blood group systems have shown the affinity of Moldavians with the Romanians and Eastern European populations.  相似文献   

10.
The influence of mating practices on genetic structure has been an area of great interest for anthropologists. In this paper, the techniques of potential mates analysis are employed to explore the mating patterns observed among the Jirels, a tribal population of eastern Nepal. Genealogical, anthropometric, dermatoglyphic, and demographic data for members of seven Jirel villages are used. Potential mate pools for a sample of 268 females are enumerated by village. Age structure and the Jirel restriction against clan endogamy are found to severely limit the number of males who are potential mates for a given female. The mating structure of the population is illuminated by statistical analysis of the characteristics of 160 actual mate pairs and all corresponding potential mate pairs. Using this approach several general mate choice practices were verified: 1) biological kin tend to be avoided as mates, 2) members of the same clan are excluded as potential mates, 3) mate exchange between clans is nonrandom, 4) individuals similar in age tend to be selected as mates, and 5) mates are drawn from the natal village more often than random expectation. A multivariate phenotypic distance measure between individuals did not reveal any evidence for assortative mating for either anthropometric or dermatoglyphic characters.  相似文献   

11.
以84个香椿(Toona sinensis(A.Juss.)Roem.)种质为材料,对其2个生长性状和18个叶部性状(包含6个质量性状和12个数量性状)进行测定。结果显示,香椿6个叶部质量性状变异类型丰富,呈现出多态化特点,单一性状的主要表型多为1~2个。苗高、地径及叶部表型等14个数量性状在种质间的差异均达到极显著水平,且除地径外,其他性状的遗传方差分量均大于环境方差分量,表明此类性状主要受遗传控制。参试的14个数量性状的平均表型变异系数为20.35%,平均遗传变异系数为16.36%;综合表型和遗传变异系数,叶柄长度较其他性状变异大,而叶片夹角稳定性最高,各数量性状(除地径外)遗传变异系数与表型变异系数之差小于7%。香椿种质各性状间Shannon-Weaver遗传多样性指数相差不大(1.892~2.069),遗传多样性水平高,具有良好的遗传改良基础。聚类分析可将84个香椿种质分为5类,类群Ⅰ表现为生长旺盛、小比叶重型;类群Ⅱ生长较快、叶片较大;类群Ⅲ种质数量最多,属生长缓慢、大比叶重型;类群Ⅳ特征为大叶片、多叶型;类群Ⅴ为小叶片、稀叶型。研究结果表明参试香椿种质变异丰富,遗传多样性水平高,能为良种选育、遗传改良等研究提供丰富的遗传材料。  相似文献   

12.
云南水稻地方品种月亮谷的群体多样性分析   总被引:2,自引:0,他引:2  
月亮谷是云南元阳梯田种植历史悠久、种植面积最大的优良水稻地方品种之一,当地少数民族具有引种或换种的稻作习惯。为揭示这种稻作习惯对月亮谷群体遗传多样性的影响,本研究对该品种群体内和群体间进行了遗传多样性的比较和分析,目的是为更好地了解月亮谷的群体遗传结构,为持久利用地方品种提供理论依据。首先采用分层随机取样的策略从元阳梯田不同海拔获得24个原位栽培群体,采用形态指数分类法和抗病性测定对24个群体共720个单株样品的月亮谷进行形态学分类和稻瘟病抗性鉴定,并分析了这些单株材料在48个SSR位点的遗传多样性。研究结果表明,形态上月亮谷属于栽培稻的籼稻类型,其群体对稻瘟病具中抗水平,但无论是在群体内还是群体间,均普遍表现出明显差异,说明不同来源的月亮谷存在抗病功能表型上的变异;遗传多样性分析显示,48对SSR引物共检测出91个多态位点,多态性位点百分率为77.08%,Nei多样性指数平均值为0.064,变幅为0~0.4302。24个群体之间的遗传相似系数在0.9753~0.9866之间,群体内个体之间的遗传相似系数在0.86~1.00之间;AMOVA分析显示,以地理村寨作为自然居群单位,居群间的变异为3.36%,居群内群体间的变异为33.15%,居群内的变异为63.49%;聚类分析显示,村寨群体间的遗传多样性与村寨间的地理空间距离有一定相关性。  相似文献   

13.
To better design association studies for complex traits in isolated populations it''s important to understand how history and isolation moulded the genetic features of different communities. Population isolates should not “a priori” be considered homogeneous, even if the communities are not distant and part of a small region. We studied a particular area of Sardinia called Ogliastra, characterized by the presence of several distinct villages that display different history, immigration events and population size. Cultural and geographic isolation characterized the history of these communities. We determined LD parameters in 8 villages and defined population structure through high density SNPs (about 360 K) on 360 unrelated people (45 selected samples from each village). These isolates showed differences in LD values and LD map length. Five of these villages show high LD values probably due to their reduced population size and extreme isolation. High genetic differentiation among villages was detected. Moreover population structure analysis revealed a high correlation between genetic and geographic distances. Our study indicates that history, geography and biodemography have influenced the genetic features of Ogliastra communities producing differences in LD and population structure. All these data demonstrate that we can consider each village an isolate with specific characteristics. We suggest that, in order to optimize the study design of complex traits, a thorough characterization of genetic features is useful to identify the presence of sub-populations and stratification within genetic isolates.  相似文献   

14.
云南苦荞种质资源主要性状的遗传多样性分析   总被引:1,自引:0,他引:1  
为了从云南苦荞种质资源中挖掘优异种质资源,拓宽苦荞遗传基础,以48份苦荞种质资源为材料研究了6个主要农艺性状和5个品质性状的遗传多样性。结果表明,云南的苦荞资源存在着丰富的遗传多样性,6个农艺性状中株粒重的变异系数为34.4%最大,品质性状中总黄酮含量的变异系数为51.72%最大。聚类结果表明,将48份材料聚为3大类,可区分为低产型、矮秆高产型和中秆高产型。6个主要农艺性状和5个品质性状的主成分分析结果表明,前3个累计贡献率分别达84.105%和80.332%,各主成分性状载荷值反映了主要数量性状的育种选择潜力。综合分析种质资源的主要农艺性状,可为云南苦荞种质资源的利用提供有效的科学依据。  相似文献   

15.
Obesity has become a public-health and policy problem in many parts of the world. Epidemiological and population studies in this field are usually based on different anthropometric measures; however, common genetic and environmental factors between these phenotypes have been scarcely studied. The objective of this article is to assess the strength of these factors on the covariation among a large set of obesity-related traits. The subject group consisted of 533 nuclear families living in the Greater Bilbao (Spain), and included 1,702 individuals aged 2-61 years. Detailed anthropometric measurements (stature, breadths, circumferences and skinfolds) were carried out in each subject. Bivariate quantitative genetic analyses were performed using a variance-components procedure implemented in the software SOLAR. The results revealed that the majority of these traits is affected by common genetic and environmental factors. All correlations were significantly different from 1 and varied from non-significant to very high (>0.90, P < 0.0001), with clearly lower pleiotropic effects among pairs including fat-distribution traits. Despite the strong common genetic effects detected among phenotypes determining the amount of body fat and mass, there is a residual genetic influence on the local fatness measures that cannot be explained exclusively by the genetic influence on overall fatness. Moreover, the observed relationships confirm a partially different genetic control of truncal and peripheral fat. In conclusion, our findings highlight the relevance of considering different types of traits in the prevention and treatment of obesity, as well as in the search for genes involved in its development.  相似文献   

16.
Walnuts are a major crop of many countries and mostly cultivated in large-scale plantations with few cultivars. Landraces provide important genetic reservoirs; thus, understanding factors influencing the geographic distribution of genetic variation in crop resources is a fundamental goal of agrobiodiversity conservation. Here, we investigated the role of human settlements and kinship on genetic variation and population structure of two walnut species: Juglans regia, an introduced species widely cultivated for its nuts, and J. sigillata, a native species cultivated locally in Yunnan. The objectives of this study were to characterize sympatric populations of J. regia and J. sigillata using 14 molecular markers and evaluate the role of Tibetan villages and kin groups (related households) on genotypic variation and population structure of J. regia and J. sigillata. Our results based on 220 walnut trees from six Tibetan villages show that although J. regia and J. sigillata are morphologically distinct, the two species are indistinguishable based on microsatellite data. Despite the lack of interspecific differences, AMOVAs partitioned among villages (5.41%, P = 0.0068) and kin groups within villages (3.34%, P = 0.0068) showed significant genetic variation. These findings suggest that village environments and familial relationships are factors contributing to the geographic structure of genetic variation in Tibetan walnuts.  相似文献   

17.
为揭示四川西部川赤芍〔Paeonia anomala subsp.veitchii(Lynch)D.Y.Hong et K.Y.Pan〕表型性状的变异规律,对川赤芍6个野生居群的株高、茎基粗、叶片和花部性状等15个表型性状进行了比较;并在此基础上,对各表型性状进行了方差分析、变异系数(CV)分析、离散系数(R′)分析、Shannon-Weaver遗传多样性指数(H′)分析、主成分分析和聚类分析.结果表明:川赤芍15个表型性状在居群间均存在极显著差异;除顶小叶长宽比外,其他14个表型性状在居群内均存在极显著或显著差异.15个表型性状在居群内的F值均明显小于居群间.15个表型性状中,每枝着花量的CV平均值最大(33.68%),花瓣数的CV平均值最小(11.26%);6个居群中,阿坝州小金县两河乡(P1)和阿坝州小金县四姑娘山镇(P2)居群的CV平均值较大,阿坝州金川县万林乡(P4)和阿坝州马尔康县卓克基乡(P5)居群的CV平均值居中,阿坝州汶川县卧龙自然保护区(P3)和甘孜州炉霍县充古乡(P6)居群的CV平均值最小.15个表型性状中,株高的R′平均值最大(64.48%),萼片数和苞片数的R′平均值均最小(37.50%);6个居群中,P2居群的R′平均值最大(56.66%),P3居群的R′平均值最小(43.65%).川赤芍6个居群15个表型性状的CV值和R′值的平均值分别为18.70%和49.80%.川赤芍15个表型性状和6个居群的H′平均值均较高,分别为1.6475和1.4510.主成分分析结果显示:叶片形态和花部特征是川赤芍表型变异的主要因子.聚类分析结果显示:在欧氏距离7.12处,川赤芍6个居群被分成2支,其中,P6居群单独聚为一支,其他5个居群聚为另一支,表明生境相似的居群更早地聚在一起.研究结果显示:四川西部川赤芍表型性状在居群间变异丰富,这与其叶片形态、花部特征及生境关系密切.  相似文献   

18.
以35个湿加松(Pinus elliottii×P.caribaea Morelet var.hondurensis)无性系为试验材料,对其8个表型性状进行相关性分析、聚类分析及主成分分析研究,并深入探讨了遗传多样性水平,为湿加松无性系利用及良种选育提供科学依据。结果表明:(1)生长性状变异系数介于12.31~29.28%,均值为22.90%;多样性指数介于1.61~1.80,均值为1.69。形质性状变异系数介于13.34~47.25%,均值为26.86%;多样性指数介于1.50~1.94,均值为1.77。表明湿加松无性系遗传变异较为丰富,遗传多样性水平较高。(2)8对表型性状两两间有11对呈极显著正相关,5对呈显著正相关。选定材积为该材料育种选择的主要指标,其次为树高。(3)采用系统聚类法在欧式距离为12的时候将35个无性系分为6大类群,部分来源相同或父本相同的聚为一类,说明它们在表型上的变异较小。(4)针对8个表型性状做主成分分析提取了3个主成分,累积贡献率达86.00%,主要代表了6个性状,以此来表达所有供试材料的综合变异情况。  相似文献   

19.
The aim of this study was to measure the protective efficacy of Olyset® Plus, a new long‐lasting factory‐treated insecticidal net (LLIN) incorporated with 2% permethrin and 1% of the synergist piperonyl butoxide (PBO), against cutaneous leishmaniasis (CL) transmission under field conditions. A village‐scale trial, promoting the use of LLIN by the local inhabitants of the study area was conducted as a pilot study in a new hyperendemic focus of CL caused by a Leishmania infantum/L. donovani hybrid parasite transmitted by proven vector species Phlebotomus tobbi in Cukurova Plain, Adana, Turkey, between May, 2013 and May, 2014. The study area comprised eight villages; two of them were selected as an intervention village with Olyset® Plus net (Kizillar) and a control village without net application (Malihidirli). Six villages with surrounding allopatric barriers were utilized as a buffer zone cluster between intervention and control villages. Monthly entomological surveys were performed in the intervention and control villages and Damyeri, representing the other six villages, to collect adults of Phlebotomus tobbi. Results showed a significant reduction in cutaneous leishmaniasis incidence in the intervention village from 4.78% to 0.37%. The protective efficacy rate of LLIN was 92.2%. In contrast, incidence rates increased in the control village from 3.67% to 4.69%. We also evaluated residual insecticide levels of used nets after six and 12 months of usage. It was determined that the nets had retained full insecticidal strength. These results highlight the value of real‐world data on bed net effectiveness and longevity to guide decisions regarding sand fly control strategies. To the best of our knowledge, this is the first field study to evaluate Olyset® Plus efficacy in a hyperendemic cutaneous leishmaniasis area.  相似文献   

20.
Data on 34 anthropometric measures from the Alexanderwohl Mennonite congregations of Kansas and Nebraska are presented. A factor analysis of these traits shows that body length and body width measures are distinct from each other as well as from measures of the head and face. Moreover, familial correlations estimated by maximum likelihood for all 34 traits tend to separate from each other along factor lines with correlations for body lengths being the highest and those for skinfolds and circumferences being the lowest. These results suggest the presence of various body "fields" which are under differing degrees of genetic and environmental control. We offer the term "functional multifactorial complex" as a means of referring to the joint genetic and environmental influences on these fields.  相似文献   

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