共查询到20条相似文献，搜索用时 0 毫秒
1.
Conceptual models of adaptive radiation predict that competitive interactions among species will result in an early burst of speciation and trait evolution followed by a slowdown in diversification rates. Empirical studies often show early accumulation of lineages in phylogenetic trees, but usually fail to detect early bursts of phenotypic evolution. We use an evolutionary simulation model to assemble food webs through adaptive radiation, and examine patterns in the resulting phylogenetic trees and species' traits (body size and trophic position). We find that when foraging trade-offs result in food webs where all species occupy integer trophic levels, lineage diversity and trait disparity are concentrated early in the tree, consistent with the early burst model. In contrast, in food webs in which many omnivorous species feed at multiple trophic levels, high levels of turnover of species' identities and traits tend to eliminate the early burst signal. These results suggest testable predictions about how the niche structure of ecological communities may be reflected by macroevolutionary patterns. 相似文献
2.
P. David Polly 《Palaeontology》2019,62(2):175-195
Evolution is a fundamentally population level process in which variation, drift and selection produce both temporal and spatial patterns of change. Statistical model fitting is now commonly used to estimate which kind of evolutionary process best explains patterns of change through time using models like Brownian motion, stabilizing selection (Ornstein–Uhlenbeck) and directional selection on traits measured from stratigraphic sequences or on phylogenetic trees. But these models assume that the traits possessed by a species are homogeneous. Spatial processes such as dispersal, gene flow and geographical range changes can produce patterns of trait evolution that do not fit the expectations of standard models, even when evolution at the local‐population level is governed by drift or a typical OU model of selection. The basic properties of population level processes (variation, drift, selection and population size) are reviewed and the relationship between their spatial and temporal dynamics is discussed. Typical evolutionary models used in palaeontology incorporate the temporal component of these dynamics, but not the spatial. Range expansions and contractions introduce rate variability into drift processes, range expansion under a drift model can drive directional change in trait evolution, and spatial selection gradients can create spatial variation in traits that can produce long‐term directional trends and punctuation events depending on the balance between selection strength, gene flow, extirpation probability and model of speciation. Using computational modelling that spatial processes can create evolutionary outcomes that depart from basic population‐level notions from these standard macroevolutionary models. 相似文献
3.
Christopher M. Swan;April Sparkman; 《Oikos》2023,2023(4):e09361
While how taxonomic diversity mediates changes in ecosystem function is well-studied, how deeper dimensions of biodiversity drive important processes is understudied. The overarching goal of this work was to determine the role of these dimensions of biodiversity independently and/or interactively in explaining carbon processing in rivers. Here, we explicitly link community structure and subsequent traits of riparian forests to adjacent ecosystem processing of carbon (e.g. leaf litter). This was accomplished by examining how forests are actually structured in addition to experimental manipulations of phylogenetic and functional diversities of riparian forest community inputs of leaf litter to streams. Experimental field manipulations were carried out in three Piedmont headwater streams to answer the following questions: 1) does existing variation in taxonomic, functional and phylogenetic diversity of riparian communities differentially drive decomposition in rivers? And 2) independent of taxonomic diversity, how does functional and phylogenetic diversity of leaf litter assemblages influence rates of decomposition in rivers? We observed significant interspecific variation in breakdown among 30 riparian tree species, in addition to significant relationships between breakdown rate and important foliar tissue chemistries. Breakdown of mixtures that reflected the composition of the riparian species composition did not vary with functional nor phylogenetic diversity, but breakdown of litter mixtures was higher than that of single species. In a separate study, when manipulated independently, functional and phylogenetic diversity were positively related to breakdown, and explained similar degrees of variation. These results are important to understand in light of deepening knowledge of the role different dimensions of biodiversity take in explaining ecosystem function. 相似文献
4.
Aim Optimal body size theories predict that large clades have a single, optimal, body size that serves as an evolutionary attractor, with the full body size spectrum of a clade resulting from interspecific competition. Because interspecific competition is believed to be reduced on islands, such theories predict that insular animals should be closer to the optimal size than mainland animals. We test the resulting prediction that insular clade members should therefore have narrower body size ranges than their mainland relatives. Location World‐wide. Methods We used body sizes and a phylogenetic tree of 4004 mammal species, including more than 200 species that went extinct since the last ice age. We tested, in a phylogenetically explicit framework, whether insular taxa converge on an optimal size and whether insular clades have narrow size ranges. Results We found no support for any of the predictions of the optimal size theory. No specific size serves as an evolutionary attractor. We did find consistent evidence that large (> 10 kg) mammals grow smaller on islands. Smaller species, however, show no consistent tendency to either dwarf or grow larger on islands. Size ranges of insular taxa are not narrower than expected by chance given the number of species in their clades, nor are they narrower than the size ranges of their mainland sister clades – despite insular clade members showing strong phylogenetic clustering. Main conclusions The concept of a single optimal body size is not supported by the data that were thought most likely to show it. We reject the notion that inclusive clades evolve towards a body‐plan‐specific optimum. 相似文献
5.
Hipp AL 《Evolution; international journal of organic evolution》2007,61(9):2175-2194
Holocentric chromosomes-chromosomes that lack localized centromeres-occur in numerous unrelated clades of insects, flatworms, and angiosperms. Chromosome number changes in such organisms often result from fission and fusion events rather than polyploidy. In this study, I test the hypothesis that chromosome number evolves according to a uniform process in Carex section Ovales (Cyperaceae), the largest New World section of an angiosperm genus renowned for its chromosomal variability and species richness. I evaluate alternative models of chromosome evolution that allow for shifts in both stochastic and deterministic evolutionary processes and that quantify the rate of evolution and heritability/phylogenetic dependence of chromosome number. Estimates of Ornstein-Uhlenbeck model parameters and tree-scaling parameters in a generalized least squares framework demonstrate that (1) chromosome numbers evolve rapidly toward clade-specific stationary distributions that cannot be explained by constant variance (Brownian motion) evolutionary models, (2) chromosome evolution in the section is rapid and exhibits little phylogenetic inertia, and (3) explaining the phylogenetic pattern of chromosome numbers in the section entails inferring a shift in evolutionary dynamics at the root of a derived clade. The finding that chromosome evolution is not a uniform process in sedges provides a novel example of karyotypic orthoselection in an organism with holocentric chromosomes. 相似文献
6.
Christopher M. Swan Bryan L. Brown Carrie A. DePalma 《International Review of Hydrobiology》2009,94(4):452-471
Understanding how species loss influences ecosystem function is a contemporary issue in ecology. However, most research has focused on species loss at one trophic‐level. We explored the relationship between functional diversity (FD) and species richness separately for trees and aquatic leaf‐shredding detritivores. For trees, we collected information on species‐specific leaf tissue chemistry and species co‐occurrences in the mid‐Atlantic region (USA). For shredders, we used a published trait database with information on communities from 38 streams in the same region. We used a clustering algorithm to estimate FD for each community and for randomly assembled communities. If FD was high, we concluded that species loss was important to change in function; if low, species were functionally redundant and insensitive to species loss. We found tree FD to be significantly different than expected, but shredders exhibited FD levels similar to patterns based on random assembly. Furthermore, there were more leaf species exclusively associated with very high or very low levels of functional diversity compared to shredders. This approach revealed greater implications for leaf than shredder species loss for litter breakdown. (© 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim) 相似文献
7.
《Ecohydrology》2018,11(1)
Water abstraction significantly impacts streams and rivers, in turn affecting ecosystem structure and function. Previous studies have mostly focused on the response of structural indicators (e.g., invertebrate community composition) to water abstraction but have often neglected the indicators of ecosystem processes (e.g., decomposition rates). In this study, we investigated the relationship of leaf‐litter decomposition rate (k) with flow reduction in a manipulated ecosystem experiment. The flow reduction rate across our experimental reaches was about 25%. The results showed that water diversion significantly reduced the discharge, width and depth of the stream, but did not affect water quality. The leaf‐litter decomposition rate varied from 0.001day‐1 to 0.026 day‐1 and decreased along with flow reduction. The results elucidate the impact of water abstraction on the decomposition of leaf‐litter in streams. A quantitative relationship between the flow rate (Q) and the decomposition rate (k), mathematically expressed as k = 0.0231 exp(ΔQ1.232) , was derived. Furthermore, a framework was developed for setting the minimum environmental flow based on the assessment of river health by using leaf‐litter processing rates. 相似文献
8.
Kenneth D. Angielczyk Chris R. Feldman Gretchen R. Miller 《Evolution; international journal of organic evolution》2011,65(2):377-394
Morphology reflects ecological pressures, phylogeny, and genetic and biophysical constraints. Disentangling their influence is fundamental to understanding selection and trait evolution. Here, we assess the contributions of function, phylogeny, and habitat to patterns of plastron (ventral shell) shape variation in emydine turtles. We quantify shape variation using geometric morphometrics, and determine the influence of several variables on shape using path analysis. Factors influencing plastron shape variation are similar between emydine turtles and the more inclusive Testudinoidea. We evaluate the fit of various evolutionary models to the shape data to investigate the selective landscape responsible for the observed morphological patterns. The presence of a hinge on the plastron accounts for most morphological variance, but phylogeny and habitat also correlate with shape. The distribution of shape variance across emydine phylogeny is most consistent with an evolutionary model containing two adaptive zones—one for turtles with kinetic plastra, and one for turtles with rigid plastra. Models with more complex adaptive landscapes often fit the data only as well as the null model (purely stochastic evolution). The adaptive landscape of plastron shape in Emydinae may be relatively simple because plastral kinesis imposes overriding mechanical constraints on the evolution of form. 相似文献
9.
Despite advances in genetic mapping of quantitative traits and in phylogenetic comparative approaches, these two perspectives are rarely combined. The joint consideration of multiple crosses among related taxa (whether species or strains) not only allows more precise mapping of the genetic loci (called quantitative trait loci, QTL) that contribute to important quantitative traits, but also offers the opportunity to identify the origin of a QTL allele on the phylogenetic tree that relates the taxa. We describe a formal method for combining multiple crosses to infer the location of a QTL on a tree. We further discuss experimental design issues for such endeavors, such as how many crosses are required and which sets of crosses are best. Finally, we explore the method's performance in computer simulations, and we illustrate its use through application to a set of four mouse intercrosses among five inbred strains, with data on HDL cholesterol. 相似文献
10.
Natural selection is inherently a multivariate phenomenon. The selection pressure on size (natural and artificial) and the age at which selection occurs is likely to induce evolutionary changes in growth rates across the entire life history. However, the covariance structure that will determine the path of evolution for size at age has been studied in only a few fish species. We therefore estimated the genetic covariance function for size throughout ontogeny using Atlantic silversides (Menidia menidia) as the model system. Over a 3‐year period, a total of 542 families were used to estimate the genetic covariance in length at age from hatch through maturity. The function‐valued trait approach was employed to estimate the genetic covariance functions. A Bayesian hierarchical model was used to account for the unbalanced design, unequal measurement intervals, unequal sample sizes, and family‐aggregated data. To improve mixing, we developed a two‐stage sampler using a Gibbs sampler to generate the posterior of a well‐mixing approximate model followed by an importance sampler to draw samples from posterior of the completely specified model. We found that heritability of length is age‐specific and there are strong genetic correlations in length across ages that last 30 days or more. We used these estimates in a hypothetical model predicting the evolutionary response to harvesting following a single generation of selection under both sigmoidal and unimodal patterns of gear selectivity to illustrate the potential outcomes of ignoring the genetic correlations. In these scenarios, genetic correlations were found to have a strong effect on both the direction and magnitude of the response to harvest selection. 相似文献
11.
F. Pinzari O. Maggi D. Lunghini D. P. Di Lonardo A. M. Persiani 《Plant biosystems》2017,151(2):371-376
The metabolic efficiency of different microbial groups in carbon source uses and single species storage efficiency is poorly characterised and not adequately represented in most biogeochemical models. It is proposed here a simple approach for an estimation of the metabolic quotient of fungal isolates. The method is based on the values of substrate use (respiration) and growth (biomass production) obtainable for single fungal isolates in vitro using the Phenotype MicroArray? system to test the metabolic performance of fungi on different substrates. As a case study, this carbon-use efficiency method was used to compare a group of leaf litter fungi. The metabolic efforts of single fungal species were measured on 95 different substrates of different complexity. The respiration to biomass ratio showed a high reliability and the possibility of being used as a measurable property of the micro-organisms and an indicator of organism’s performance or fitness. 相似文献
12.
Species enter and persist in local communities because of their ecological fit to local conditions, and recently, ecologists have moved from measuring diversity as species richness and evenness, to using measures that reflect species ecological differences. There are two principal approaches for quantifying species ecological differences: functional (trait‐based) and phylogenetic pairwise distances between species. Both approaches have produced new ecological insights, yet at the same time methodological issues and assumptions limit them. Traits and phylogeny may provide different, and perhaps complementary, information about species' differences. To adequately test assembly hypotheses, a framework integrating the information provided by traits and phylogenies is required. We propose an intuitive measure for combining functional and phylogenetic pairwise distances, which provides a useful way to assess how functional and phylogenetic distances contribute to understanding patterns of community assembly. Here, we show that both traits and phylogeny inform community assembly patterns in alpine plant communities across an elevation gradient, because they represent complementary information. Differences in historical selection pressures have produced variation in the strength of the trait‐phylogeny correlation, and as such, integrating traits and phylogeny can enhance the ability to detect assembly patterns across habitats or environmental gradients. 相似文献
13.
水稻光合功能相关性状QTL分析 总被引：7，自引：0，他引：7
利用粳稻Kinmaze／籼稻DV85杂交后代单粒传衍生的81个F11家系所组成的重组自交系（Recombinant Inbred Lines,RILs）群体,研究水稻光合功能相关性状的数量性状基因座（QTL）。在水稻抽穗后7d测定叶片全氮含量（TLN）、叶绿素a／b比值（Chl．a：b）和叶绿素含量（Chl）。共检测到6个QTL,各QTL的LOD值为2．66～4．81,贡献率为11．2％-29．6％,其中,在第1、2和11染色体上检测到3个与全氮含量相关的QTL,相应贡献率为17．3％、15．3％、13．7％;在第3和4染色体检测到2个与叶绿素a／b比值相关的QTL,贡献率为13．8％和29．6％;在第1染色体检测到1个与叶绿素含量相关的QTL,贡献率为11．2％。4个QTL为本研究新检测的基因座。有趣的是,控制叶绿素含量的qCC-1位于第1染色体上RFLP标记C122附近,与已报道的NADH-谷氨酸合成酶基因位置一致,而叶绿素合成始于谷氨酸,暗示该基因座与水稻光合功能关系极为密切。然而,对抽穗后30d叶绿素含量进行QTL分析,结果未检测到与其相关的QTL,表明控制叶绿素含量qCC-1效应随水稻叶片的衰老而降低。 相似文献
14.
Freshwater ecosystems are exposed to many stressors, including toxic chemicals and global warming, which can impair, separately or in combination, important processes in organisms and hence higher levels of organization. Investigating combined effects of warming and toxicants has been a topic of little research, but neglecting their combined effects may seriously misguide management efforts. To explore how toxic chemicals and warming, alone and in combination, propagate across levels of biological organization, including a key ecosystem process, we developed an individual‐based model (IBM) of a freshwater amphipod detritivore, Gammarus pseudolimnaeus, feeding on leaf litter. In this IBM, life history emerges from the individuals’ energy budgets. We quantified, in different warming scenarios (+1–+4 °C), the effects of hypothetical toxicants on suborganismal processes, including feeding, somatic and maturity maintenance, growth, and reproduction. Warming reduced mean adult body sizes and population abundance and biomass, but only in the warmest scenarios. Leaf litter processing, a key contributor to ecosystem functioning and service delivery in streams, was consistently enhanced by warming, through strengthened interaction between the detritivorous consumer and its resource. Toxicant effects on feeding and maintenance resulted in initially small adverse effects on consumers, but ultimately led to population extinction and loss of ecosystem process. Warming in combination with toxicants had little effect at the individual and population levels, but ecosystem process was impaired in the warmer scenarios. Our results suggest that exposure to the same amount of toxicants can disproportionately compromise ecosystem processing depending on global warming scenarios; for example, reducing organismal feeding rates by 50% will reduce resource processing by 50% in current temperature conditions, but by up to 200% with warming of 4 °C. Our study has implications for assessing and monitoring impacts of chemicals on ecosystems facing global warming. We advise complementing existing monitoring approaches with directly quantifying ecosystem processes and services. 相似文献
15.
Nobuyuki Kutsukake Hideki Innan 《Evolution; international journal of organic evolution》2013,67(2):355-367
Phylogenetic comparative methods (PCMs) have been used to test evolutionary hypotheses at phenotypic levels. The evolutionary modes commonly included in PCMs are Brownian motion (genetic drift) and the Ornstein–Uhlenbeck process (stabilizing selection), whose likelihood functions are mathematically tractable. More complicated models of evolutionary modes, such as branch‐specific directional selection, have not been used because calculations of likelihood and parameter estimates in the maximum‐likelihood framework are not straightforward. To solve this problem, we introduced a population genetics framework into a PCM, and here, we present a flexible and comprehensive framework for estimating evolutionary parameters through simulation‐based likelihood computations. The method does not require analytic likelihood computations, and evolutionary models can be used as long as simulation is possible. Our approach has many advantages: it incorporates different evolutionary modes for phenotypes into phylogeny, it takes intraspecific variation into account, it evaluates full likelihood instead of using summary statistics, and it can be used to estimate ancestral traits. We present a successful application of the method to the evolution of brain size in primates. Our method can be easily implemented in more computationally effective frameworks such as approximate Bayesian computation (ABC), which will enhance the use of computationally intensive methods in the study of phenotypic evolution. 相似文献
16.
Mesenchymal stem cells (MSCs) have been shown to play therapeutic effect in traumatic brain injury (TBI). To augment the therapeutic effect, MSCs could be engineered to over‐express genes that are beneficial for treatment. In the present study, we over‐expressed hypoxia inducible factor (HIF)‐1alpha in bone marrow derived MSCs (BM‐MSCs) and sought to investigate whether HIF‐1alpha could enhance the therapeutic effect of MSCs in a mouse model of TBI. Balb/c mice were subjected to controlled cortical impact injury and MSCs were transplanted intravenously at 6 h after injury. The lesion volume and brain water content were measured and the neurological function was assessed by modified neurologic severity score tests. Double‐labeled immunofluorescence for BrdU and NeuU was performed to determine angiogenesis and neurogenesis. The expression of erythropoietin (EPO) and vascular endothelial growth factor (VEGF) was measured by quantitative RT‐PCR and western blotting. After TBI, mice received BM‐MSCs over‐expressing HIF‐1alpha showed significantly more functional recovery, reduced brain damage, increased angiogenesis and neurogenesis and increased expression of VEGF and EPO, compared with control mice or mice treated with non‐transduced BM‐MSCs. Over‐expression of HIF‐1alpha enhanced BM‐MSCs induced improvement of neurological recovery after TBI, by stimulating angiogenesis and neurogenesis. 相似文献
17.
David S. Clare;Clement Garcia;Stefan G. Bolam; 《Oikos》2024,2024(9):e10154
Anthropogenic biodiversity loss can impair ecosystem functioning. Human activities are often managed with the aim of reversing biodiversity loss and its associated functional impacts. However, it is currently unknown whether biodiversity–ecosystem function (BEF) relationships observed during biodiversity recovery are the same as those observed during biodiversity loss. This will depend on how species extirpation and recolonisation sequences compare and how different species influence ecosystem functioning. Using data from a marine benthic invertebrate community, we modelled how bioturbation potential – a proxy for benthic ecosystem functioning – changes along biodiversity loss and recovery sequences governed by species' sensitivity to physical disturbance and recolonisation capability, respectively. BEF relationships for biodiversity loss and recovery were largely the same despite species extirpation and recolonisation sequences being different. This held true irrespective of whether populations were assumed to exhibit compensatory responses as species were removed or added. These findings suggest that the functional consequences of local biodiversity loss can be reversed by alleviating its drivers, as different species present at comparable levels of species richness during biodiversity loss and recovery phases have similar functional effects. Empirically verifying and determining the generality of our model-based results are potential next steps for future research. 相似文献
18.
19.
Dissolved organic carbon (DOC) is an abundant form of organic matter in stream ecosystems. Most research has focused on the watershed as the source of DOC in streams, but DOC also comes from leaching of organic matter stored in the stream channel. We used a whole-ecosystem experimental approach to assess the significance of leaching of organic matter in the channel as a source of DOC in a headwater stream. Inputs of leaf litter were excluded from a forested Appalachian headwater stream for 3 years. Stream-water concentration, export, and instream generation of DOC were reduced in the litter-excluded stream as compared with a nearby untreated reference stream. The proportion of high molecular weight (HMW) DOC (more than 10,000 daltons) in stream water was not altered by litter exclusion. Mean DOC concentration in stream water was directly related to benthic leaf-litter standing stock. Instream generation of DOC from leaf litter stored in the stream channel contributes approximately 30% of daily DOC exports in this forested headwater stream. This source of DOC is greatest during autumn and winter and least during spring and summer. It is higher during increasing discharge than during base flow. We conclude that elimination of litter inputs from a forested headwater stream has altered the biogeochemistry of DOC in this ecosystem. Received 2 September 1997; accepted 27 January 1998. 相似文献
20.
Many authors have agreed on the interest of considering environmental concerns in the early stages of product development. However, most eco‐design tools are based on life cycle assessment principles and require a model to give information about the product's environmental performance. This modeling can have negative effects on team performance and on the potential for innovation, not to mention on the project's duration. Additionally, the model requires information that is not available in the early design stages. This article analyzes the potential of inferring conclusions about the life cycle stages with the highest impact by using similar products. From a database of previous products, environmental profile estimations are carried out, that is, the assessments of the contribution of each life cycle stage to the total impact and the variability of this measure. It is then possible to discard—or ensure consideration of—life cycle stages. Furthermore, the level of the conclusions is assessed on a five‐point scale. The proposed approach is applied to four case studies with different levels of abstraction and the relevance of the conclusions is assessed. The article resolves the problems regarding potential for estimating the distribution of the environmental impacts along the life cycle. 相似文献