Patterns of richness and endemism of the Mexican herpetofauna,a matter of spatial scale?

The goal of this study was to compare the richness and endemism patterns of Mexican species of amphibians and reptiles at different spatial scales. We used the best available dataset of distributional ranges generated from ecological niche models and employed geographically weighted regressions (GWRs) to test whether richness and endemism were related. Patterns were found to vary with the scale used for richness and endemism, and these patterns were not coincident. The results showed that: (1) only relatively coarse spatial scales can address latitudinal patterns in amphibians and reptiles, and, in fine scales, they are related to topographic formations; (2) areas of greatest endemism for amphibians and reptiles are located in the highlands of the central or southern part of the country, although not necessarily in the same specific highlands for both groups; (3) there is a strong average correlation between richness and endemism for both groups, indicating that the same factors contribute to both patterns, but these factors act differentially in terms of regions among amphibians and reptiles; and (4) the scale at which the analysis is conducted is important, and we believe that careful consideration of spatial scale must be undertaken to avoid false conclusions. © 2013 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 111 , 305–316.     

Who is where in the Plastisphere,and why does it matter?

To fully understand how plastic is affecting the ocean, we need to understand how marine life interacts directly with it. Besides their ecological relevance, microbes can affect the distribution, degradation and transfer of plastics to the rest of the marine food web. From amplicon sequencing and scanning electron microscopy, we know that a diverse array of microorganisms rapidly associate with plastic marine debris in the form of biofouling and biofilms, also known as the “Plastisphere.” However, observation of multiple microbial interactions in situ, at small spatial scales in the Plastisphere, has been a challenge. In this issue of Molecular Ecology Resources, Schlundt et al. apply the combination labelling and spectral imaging – fluorescence in situ hybridization to study microbial communities on plastic marine debris. The images demonstrate the colocalization of abundant bacterial groups on plastic marine debris at a relatively high taxonomic and spatial resolution while also visualizing biofouling of eukaryotes, such as diatoms and bryozoans. This modern imaging technology provides new possibilities to address questions regarding the ecology of marine microbes on plastic marine debris and describe more specific impacts of plastic pollution in the marine food webs.     

Does the protected area network preserve bird species of conservation concern in a rapidly changing climate?

Species ranges are expected to move polewards following the changing climate, which poses novel challenges to the protected area network, particularly at northern latitudes. Here we study how well protected areas are likely to sustain populations of birds of conservation concern under a changing climate in northern Europe, in Finland. We fitted bioclimatic envelope models generated for 100 bird species to climate scenario data for the years 2051–2080 and three alternative emission scenarios in a 10-km grid system to predict changes in the species probability of occurrence. We related the projected changes in the climatic suitability to the amount of protected preferred habitat for the study species in the 10-km grid cells, and based on the cover of four main CORINE Land Cover classes in each conservation area in Finland. The probability of occurrence of all species (except marshland birds) decreased according to all scenarios, the decline being greatest in southern and smallest in northern boreal zones. This decline was slightly greater in unprotected than in protected areas for species of forests, mires and mountain habitats. The climatically suitable areas for the species were predicted to shift northwards, but the potential gain of southern species of conservation concern appears not to compensate for the loss of northern species. Thus, a representative protected area network is needed in all boreal zones. Overall, our results show that species-specific habitat preferences and habitat availability should be taken into account when assessing the efficiency of a protected area network in a changing climate.     

Warmer and richer? Predicting the impact of climate warming on species richness in small temperate waterbodies

Climate change is expected to affect communities worldwide. Many studies focus on responses at the regional level and show an increase in species richness. However, less is known about the consequences of climate change at the local scale (in ecosystems). Small waterbodies, such as ponds, could play an important role for the assessment of the impact of future changes in climate at the local level. We evaluated here the potential changes due to climate warming in the species richness for various groups (plants, snails, beetles, dragonflies, amphibians) across 113 lowland and high altitude ponds in Switzerland. We modelled the relationships between species richness and environmental variables (including temperature) and predicted species richness changes for the end of the century (2090–2100; using the A2 IPCC scenario). Temperature rise could significantly increase pond species richness. For the five taxonomic groups pooled, species richness would potentially increase from 41 to 75 (+83%) in lowland ponds. In presently species‐poor high altitude ponds, the potential increase would be particularly marked, with a proportional increase (+150%; from 14 to 35 species) almost double that in lowland areas. A strong increase in species richness also resulted from models including changes in additional variables, such as landuse or water quality. Future reductions in water quality (e.g. increase in nutrients) may limit the predicted increase in lowland species richness or, conversely, result in a greater increase in species richness in high altitude areas. Nutrient enrichment is shown to affect the taxonomic groups differentially, with plant species richness the most negatively influenced. Climate warming could therefore affect species richness of temperate ponds not only regionally, but also at the local, within ecosystems‐scale; species richness could increase markedly in temperate regions, and especially so at higher altitude.     

What drives the positive correlation between human population density and bird species richness in Australia?

Aim To test six hypotheses that could explain or mediate the positive correlation between human population density (HPD) and bird species richness while controlling for biased sampling effort. These hypotheses were labelled as follows: productivity (net primary productivity, NPP); inherent heterogeneity (diversity of vegetation types); anthropogenic heterogeneity (diversity of land uses); conservation policy (proportion of conservation land); increased productivity (human‐induced productivity increases); and the reduced‐slope hypothesis (which predicts that humans have a negative impact on species numbers across the full range of variation in HPD). Location Australia. Methods All data were collected at a spatial resolution of 1° across mainland Australia. Bird species richness was from 2007 atlas data and random subsampling was used to account for biased sampling effort. HPD was from the 2006 census. All other data were from government produced geographic information system layers. The most important biotic or abiotic factors influencing patterns in both species richness and HPD were assessed using simultaneous autoregressive models and an information theoretic approach. Results NPP appeared to be one of the main factors driving spatial congruence between bird species richness and HPD. Inherent habitat heterogeneity was weakly related to richness and HPD, although an interaction between heterogeneity and NPP indicated that the former may be an important determinant of species richness in low‐productivity regions. There was little evidence that anthropogenic landscape heterogeneity or human‐induced changes in productivity influenced the relationship between species richness and HPD, but conservation policy appeared to act as an important mediating factor and species richness was positively related to the proportion of conservation land only in regions of high HPD. Main conclusions The spatial congruence between bird species richness and HPD occurs because both respond positively to productivity and, in certain circumstances, habitat heterogeneity. Our results suggest that conservation policy could mediate this relationship, but further research is required to determine the importance of conservation reserves in supporting species in regions densely populated by humans.     

Does species richness drive community production or vice versa? Reconciling historical and contemporary paradigms in competitive communities

Studies examining the relationship between species richness and the productivity of ecological communities have taken one of two opposite viewpoints, viewing either productivity as a primary driver of richness or richness as a driver of productivity. Recently, verbal and graphical hypotheses have been proposed that attempt to merge these perspectives by clarifying the causal pathways that link resource supply, species richness, resource use, and biomass production. Here we present mathematical models that formalize how these pathways can operate simultaneously in a single ecological system. Using a metacommunity framework in which classic consumer-resource competition theory governs species interactions within patches, we show that the mechanisms by which resource supply influences species richness are inherently linked to the mechanisms by which species richness controls resource use and biomass production. Unlike prior hypotheses, our models show that resource supply can affect species richness and that richness can affect productivity simultaneously at a single spatial scale. Our models also reproduce scale-dependent associations between species richness and community biomass that have been reported elsewhere. By detailing the pathways by which resource supply, species richness, biomass production, and resource use are connected, our models move closer to resolving the nature of causality in diversity-productivity relationships.     

Ciliate biogeography in Antarctic and Arctic freshwater ecosystems: endemism or global distribution of species?

Ciliate diversity was investigated in situ in freshwater ecosystems of the maritime (South Shetland Islands, mainly Livingston Island, 63 degrees S) and continental Antarctic (Victoria Land, 75 degrees S), and the High Arctic (Svalbard, 79 degrees N). In total, 334 species from 117 genera were identified in both polar regions, i.e. 210 spp. (98 genera) in the Arctic, 120 spp. (73 genera) in the maritime and 59 spp. (41 genera) in the continental Antarctic. Forty-four species (13% of all species) were common to both Arctic and Antarctic freshwater bodies and 19 spp. to both Antarctic areas (12% of all species). Many taxa are cosmopolitans but some, e.g. Stentor and Metopus spp., are not, and over 20% of the taxa found in any one of the three areas are new to science. Cluster analysis revealed that species similarity between different biotopes (soil, moss) within a study area was higher than between similar biotopes in different regions. Distinct differences in the species composition of freshwater and terrestrial communities indicate that most limnetic ciliates are not ubiquitously distributed. These observations and the low congruence in species composition between both polar areas, within Antarctica and between high- and temperate-latitude water bodies, respectively, suggest that long-distance dispersal of limnetic ciliates is restricted and that some species have a limited geographical distribution.     

Can tree species richness attenuate the effect of drought on organic matter decomposition and stabilization in young plantation forests?

Changes in precipitation due to climate change are likely to influence soil organic matter (SOM) decomposition and stabilization. In forests, increased tree species diversity could modulate the effects of drought on SOM decomposition and stabilization. We addressed this issue by a decomposition study under simulated drought (through precipitation reduction at Zedelgem, Belgium) and natural drought (ORPHEE, southern France) in young experimental plantations (tree species richness 1 to 5). In Zedelgem, the study focused on tree species richness around oak and beech trees. Two tea bag indices (TBI) – decomposition rate (k) and stabilization factor (S) – were calculated by measuring the decay of green and rooibos tea in soils. Overall, TBI's were higher in Zedelgem than at ORPHEE. In Zedelgem, k increased with tree species richness under drought around oak, indicating that tree species richness modulated the effects of drought on decomposition. Under beech, k decreased with drought while no effect of tree species richness was detected. S increased with drought under both oak and beech, without any effect of tree species richness. In ORPHEE, we did not detect any tree species richness effect on both TBIs. S decreased significantly, while k was marginally reduced under drought. The higher S under drought in Zedelgem and under control in OPRHEE suggests that the carbon sequestration potential under climate change would be dependent on the environmental context. Further, in young plantations, high species richness may modulate the drought effect on SOM decomposition, but not on stabilization.     

Rapoport's rule: an explanation or a byproduct of the latitudinal gradient in species richness?

A recent explanation of the declining species richness gradient with increasing latitude away from the tropics implicated broad scale habitat variability, an associated range expansion, and a resulting increase in niche breadth. The niche breadth in turn was thought to affect richness by competition and rescue effect. While all three factors appear to be correlated, neither the postulated nor alternative causal mechanisms have been tested. We conduct such a test using a system which has all the attributes of the large scale pattern but which, in contrast to continental scale observations, allows for estimation or control of crucial variables such as taxonomic composition, habitat heterogeneity, habitat variability, exact species distribution, and local richness. Specifically, we test the alternative that the correlation between the geographical range of species and local diversity is a function of differential species survival and link this phenomenon to habitat variability. We use 40 species of aquatic invertebrates inhabiting a landscape of 49 miniature rock pools on the coast of Jamaica. The system we examined exhibits a gradient of increasing richness with decreasing habitat variability, analogous to the broad scale latitudinal pattern. Furthermore, species with broader ecological ranges are also broadly distributed. Superficially, this appears to be in agreement with the older explanations but two facts suggest different causes. First, there is no evidence of a rescue effect maintaining high richness in many habitats despite their proximity to species sources. Second, ecologically broad species coexist with habitat specialists without reducing richness in jointly occupied habitats.     

Are bird density,species richness and community structure similar between native woodlands and non-native plantations in an area with a generalist bird fauna?

This study compared the bird assemblages of native semi-natural woodlands and non-native Sitka spruce (Picea sitchensis) plantations in Ireland to identify what vegetation variables most influenced birds and to identify management targets in plantations to maximise future bird conservation. Point counts were conducted in 10 Oak (Quercus spp.) and 10 Ash (Fraxinus excelsior) native woodlands and in five Mid-rotation (20–30 years old) and five Mature (30–50 years old) Sitka spruce plantations. Ordination was used to characterise woodland types according to their constituent bird species. Total bird density (calculated using Distance software) and species richness were assessed for the different woodland types. Oak and Ash woodland bird assemblages were separated from Mid-rotation and Mature plantations by the ordination. There was no difference in total bird density between any of the woodland types. Oak woodlands had significantly higher species richness than either Mid-rotation or Mature Sitka spruce plantations. Ash had higher species richness than Mature Sitka spruce plantations. Understorey vegetation was negatively associated with total bird density, which also varied with survey year. Understorey vegetation was positively associated with species richness. Reasons for the relationships between vegetation and bird assemblages are discussed. Management should seek to increase shrub and understorey vegetation in the Mid-rotation phase to improve the contribution of plantations to bird conservation.     

Centre–periphery approaches based on geography,ecology and historical climate stability: what explains the variation in morphological traits of Bulnesia sarmientoi?

Background and AimsThe centre–periphery hypothesis posits that higher species performance is expected in geographic and ecological centres rather than in peripheral populations. However, this is not the commonly found pattern; therefore, alternative approaches, including the historical dimension of species geographical ranges, should be explored. Morphological functional traits are fundamental determinants of species performance, commonly related to environmental stability and productivity. We tested whether or not historical processes may have shaped variations in tree and leaf traits of the Chaco tree Bulnesia sarmientoi.MethodsMorphological variation patterns were analysed from three centre–periphery approaches: geographical, ecological and historical. Tree (stem and canopy) and leaf (leaf size and specific leaf area) traits were measured in 24 populations across the species range. A principal component analysis was performed on morphological traits to obtain synthetic variables. Linear mixed-effects models were used to test which of the implemented centre–periphery approaches significantly explained trait spatial patterns.Key ResultsThe patterns retrieved from the three centre–periphery approaches were not concordant. The historical approach revealed that trees were shorter in centre populations than in the periphery. Significant differences in leaf traits were observed between the geographical centre and the periphery, mainly due to low specific leaf area values towards the geographical centre. We did not find any pattern associated with the ecological centre–periphery approach.ConclusionsThe decoupled response between leaf and tree traits suggests that these sets of traits respond differently to processes occurring at different times. The geographical and historical approaches showed centres with extreme environments in relation to their respective peripheries, but the historical centre has also been a climatically stable area since the Last Glacial Maximum. The historical approach allowed for the recovery of historical processes underlying variation in tree traits, highlighting that centre–periphery delimitations should be based on a multi-approach framework.     

Genetic and phenotypic divergence in an island bird: isolation by distance,by colonization or by adaptation?

Discerning the relative roles of adaptive and nonadaptive processes in generating differences among populations and species, as well as how these processes interact, is a fundamental aim in biology. Both genetic and phenotypic divergence across populations can be the product of limited dispersal and gradual genetic drift across populations (isolation by distance), of colonization history and founder effects (isolation by colonization) or of adaptation to different environments preventing migration between populations (isolation by adaptation). Here, we attempt to differentiate between these processes using island populations of Berthelot's pipit (Anthus berthelotii), a passerine bird endemic to three Atlantic archipelagos. Using microsatellite markers and approximate Bayesian computation, we reveal that the northward colonization of this species ca. 8500 years ago resulted in genetic bottlenecks in the colonized archipelagos. We then show that high levels of genetic structure exist across archipelagos and that these are consistent with a pattern of isolation by colonization, but not with isolation by distance or adaptation. Finally, we show that substantial morphological divergence also exists and that this is strongly concordant with patterns of genetic structure and bottleneck history, but not with environmental differences or geographic distance. Overall, our data suggest that founder effects are responsible for both genetic and phenotypic changes across archipelagos. Our findings provide a rare example of how founder effects can persist over evolutionary timescales and suggest that they may play an important role in the early stages of speciation.     

Variation in fish community structure, richness, and diversity in 56 Danish lakes with contrasting depth, size, and trophic state: does the method matter?

Organisms inhabiting shallow near-shore waters are at risk of desiccation during water level fluctuations. Using laboratory experiments, we investigated the survival and behavioural defences of four freshwater amphipod species during substratum drying: three Ponto-Caspian invaders (Pontogammarus robustoides, Dikerogammarus haemobaphes and Dikerogammarus villosus) and the native Gammarus fossarum. We hypothesized that they would be able to survive air exposure events as well as to adjust their behaviour by following the decreasing water level and/or burying in the sediments. To test these hypotheses, we examined survival of each species on gradually drying sandy substratum as well as their horizontal and vertical migration behaviours. P. robustoides was most resistant to substratum drying and was the only species burying into the substratum. On the other hand, G. fossarum exhibited distinct horizontal migrations following the retreating waterline. These two species seem to be particularly well adapted to the drying environment. Defence mechanisms of D. haemobaphes and D. villosus were less efficient, though the former species also followed the retreating waterline to some extent. Our study demonstrates that exotic and native gammarids have several adaptations that enable them to invade and persist in habitats experiencing common water level fluctuations.     

What is the role of disturbance in catalyzing spatial shifts in forest composition and tree species biomass under climate change?

Mounting evidence suggests that climate change will cause shifts of tree species range and abundance (biomass). Abundance changes under climate change are likely to occur prior to a detectable range shift. Disturbances are expected to directly affect tree species abundance and composition, and could profoundly influence tree species spatial distribution within a geographical region. However, how multiple disturbance regimes will interact with changing climate to alter the spatial distribution of species abundance remains unclear. We simulated such forest demographic processes using a forest landscape succession and disturbance model (LANDIS-II) parameterized with forest inventory data in the northeastern United States. Our study incorporated climate change under a high-emission future and disturbance regimes varying with gradients of intensities and spatial extents. The results suggest that disturbances catalyze changes in tree species abundance and composition under a changing climate, but the effects of disturbances differ by intensity and extent. Moderate disturbances and large extent disturbances have limited effects, while high-intensity disturbances accelerate changes by removing cohorts of mid- and late-successional species, creating opportunities for early-successional species. High-intensity disturbances result in the northern movement of early-successional species and the southern movement of late-successional species abundances. Our study is among the first to systematically investigate how disturbance extent and intensity interact to determine the spatial distribution of changes in species abundance and forest composition.     

Flowering phenology of co-occurring Asteraceae: a matter of climate,ecological interactions,plant attributes or of evolutionary relationships among species?

We analyzed the flowering phenodynamics of 43 Asteraceae species co-occurring in natural populations of Chaco Serrano forests in central Argentina. We explored the potential influence of factors such as photoperiod and climate (variations in temperature, rainfall, and frost), animal-plant interactions (richness of floral visitors, frequency of visits), some plant attributes (plant growth form, seed dispersal mechanism), and evolutionary relationships among species on flowering phenodynamics. Cluster Analysis (CA) and Principal Component Analysis (PCA) were the multivariate statistical methods used to analyze emerging patterns associated with these co-occurring species. Null-model analyses were used to evaluate whether flowering times are aggregated, segregated, or random. Results showed that flowering phenology was significantly correlated with the seasonal variation in temperature, photoperiod, rainfall, and frost. The multivariate statistical methods separated all the species in three groups: 1) species with short flowering time, large plant floral display, high frequency of visits by a large number of species of floral visitors, anemochorous fruits, and shrubby growth form, with a tendency to a segregated flowering pattern; 2) species with long flowering time, small plant floral display, low frequency of visits by few insect species, anemochorous fruits, and herbaceous growth form; and 3) species with long flowering time, small plant floral display, intermediate values for frequency of visits and number of species of floral visitors, seed dispersal mechanisms other than anemochory, and herbaceous growth form. In addition, all but one species belonging to early-branching tribes (tribes phylogenetically close to the root of the Asteraceae tree) were grouped together and clustered in the same region of the two-dimensional PCA ordination. All species belonging to the late-branching tribes (Asteroideae subfamily tribes) included in group 1 were separated from the other Asteroideae species in the PCA. In conclusion, it seems that climatic factors restrict the phenological period of most species, and that plant attributes and taxonomic membership are strongly related to flowering phenodynamics in this group of Asteraceae studied.     

The poor health of deep-water species in the context of fishing activity and a warming climate: will populations of Molva species rebuild or collapse?

Many deep-water fish populations, being K-selected species, have little resilience to overexploitation and may be at serious risk of depletion as a consequence. Sea warming represents an additional threat. In this study, the condition, or health, of several populations of common ling (Molva molva), blue ling (Molva dypterygia) and Mediterranean or Spanish ling (Molva macrophthalma) inhabiting different areas in the North Atlantic and the Mediterranean was evaluated, to shed light on the challenges these deep-water species are facing in the context of fishing activity and a warming climate. The data on the condition of Molva populations which are analysed here have been complemented with data on abundance and, for the southernmost species (Mediterranean ling), with two other health indicators (parasitism and hepato-somatic index). Despite some exceptions (e.g., common ling in Icelandic waters), this study shows that the condition of many populations of Molva species in the northeastern Atlantic and the Mediterranean Sea has worsened, a trend which, in recent decades, has usually been found to be accompanied by a decline in their abundance. In addition, the poor health status of most populations of common ling, blue ling and Mediterranean ling considered in this analysis points to a lower sustainability of these populations in the future. Overall, the health status and abundance of Molva populations in the northeastern Atlantic and the Mediterranean suggest that only some populations located in the North Atlantic may be able to rebuild, whereas the populations in southern North Atlantic and the Mediterranean, which are probably most at risk from sea warming, are facing serious difficulties in doing so. In the context of fisheries and global warming, this study's results strongly indicate that management bodies need to consider the health status of many of the populations of Molva species, particularly in southern European waters, before implementing their decisions.     

Do biogeographic parameters matter? Plant species richness and distribution of macrophytes in relation to area and isolation of ponds in NW Polish agricultural landscape

Effects of pond size and isolation on total vascular plant species richness and number of obligate wetland species were compared. Subsequently, the potential for the presence of spatial patterns in wetland species distribution among ponds in an agricultural landscape was explored. Relationships between species richness and two main biogeographic parameters were analysed using simple and multiple linearised regression models. Spatial patterns were looked for by means of analyses carried out with the R CRAN software (join-count statistics). Simple regression analyses performed on the regional scale (n = 50) revealed the significance of the effect of pond size only (r = 0.46 for total plant species richness and r = 0.28 for wetland species richness vs. pond area). Further analyses conducted on the local scale identified the best multiple regression models in the largest pond cluster (n = 20); the models showed statistical significance of relationships between the species richness and both independent variables (r = 0.80 for total plant species richness and r = 0.70 for wetland species richness vs. pond area and isolation, including mean distance to the nearest ten ponds). Spatial analyses were performed for 26 obligate wetland species selected from 149 species recorded in all the 50 ponds. Exploratory spatial data analysis revealed the presence of significant positive spatial autocorrelation in the distribution of 8 species. In such cases, it is possible to reject the random distribution hypothesis, which justifies exploration of spatial regimes. In practice, correct spatial model specifications may have implications for predicting species occurrences under changing environmental conditions, e.g. changes in the number of ponds.