An excess of the Pi Sallele in dizygotic twins and their mothers

Summary A significant excess of the ₁ (protease inhibitor) Pi ^S allele has been found in 147 pairs of dizygotic (DZ) twins, but frequencies in 170 pairs of monozygotic (MZ) twins do not differ from those in a sample of 1007 blood donors. In 51 mothers of DZ twins the frequency of the Pi ^S allele was double than in the same sample of donors, but there was no corresponding increase in the fathers of DZ twins nor in the parents of MZ twins. In an independent sample of 66 mothers of twins of unknown zygosity, there was also a significant excess of Pi ^M Pi^S and Pi^M Pi^Z phenotypes, and this was particularly marked in the subsample of mothers of opposite-sex twin pairs. We speculate that lowered protease inhibitor levels in women carrying the Pi ^S allele may enhance sperm migration, increase the probability of multiple ovulation, or both.     

Pi Ecincinnati: A new alpha1-antitrypsin allele in three negro families

Summary Serum specimens of three unrelated black males had an unusual alpha-1-antitrypsin phenotype, designated Pi Ecincinnati because of its electrophoretic mobility. Family studies indicated that the new phenotype was the expression of an alpha-1-antitrypsin allele, labeled Pi ^Ecincinnati     

α1-antitrypsin (Pi) phenotypes in a village population from the Gambia,West Africa

Summary A total of 701 individuals from a village in The Gambia, West Africa were tested for serum ₁ ^- antitrypsin phenotypes by isoelectric focusing in thinlayer polyacrylamide gels (pH 4-5). A new variant allele, Pi ^GAM , was discovered at a polymorphic frequency (0.0642), and the inheritance of the variant phenotype was confirmed by family studies. The variant was not found to be associated with any decrease in serum ₁ ^- concentration. The only other allele found within this population was the common allele Pi ^M (0.9358).     

Alpha-1-antitrypsin (Pi) types in Korean and Chinese populations

Summary Alpha-1-antitrypsin phenotypes were determined by isoelectric focusing in 270 Koreans and 52 Chinese. The frequencies of the major alleles were the following, numbers for the Chinese sample are in parentheses: Pi^M1: 0.65 (0.66), Pi^M2: 0.22 (0.25), Pi^M3: 0.06 (0.09). Other alleles, including Pi^Z were present in low frequencies. The Koreans appear to be quite similar to the Chinese in this system.     

Broad-spectrum Blast Resistance Gene Pi-k h Cloned from Rice Line Tetep Designated as Pi54

Blast disease caused by Magnaporthe oryzae is one of the important biotic stresses of rice. So far more than 85 blast resistance genes have been identified of these more than 14 have already been cloned. A broad spectrum rice blast resistance gene Pi-k ^h was cloned from the rice line Tetep. The gene was named Pi-k ^h based on the earlier reports on its genetic analysis in various rice lines. However, with the advances in molecular genetics and genomics of rice, the Pik locus has now been mapped more precisely. Since there are two reports on the mapping of Pi-k ^h gene from different rice lines, there is some confusion in the naming of this gene. In this report the name of Pi-k ^h gene cloned from the rice line Tetep has been designated as per the standard guidelines of Committee on Gene Symbolization, Nomenclature and Linkage (CGSNL) and its physical location on rice chromosome 11, which is ～2.5 Mbp away from the Pik locus mapped recently. Hence Pi-k ^h gene cloned from Tetep is now designated as Pi54.     

The localization of rDNA in small,nucleolus-like structures in human diplotene oocyte nuclei

Summary Alpha-1-antitrypsin Pi phenotyping was performed by thin-layer isoelectric focusing on samples from 1653 healthy white blood donors. The variants were confirmed by the acid-starch gel technique and crossed immuno-electrophoresis, with complete agreement between the two methods. The allele frequencies in this population were PiM, 0.9019; PiS, 0.0713; PiZ, 0.0142; PiI, 0.0036; PiF, 0.0036; PiV, 0.0024. In addition, some rare phenotypes (MX, IS, LM) were noted. No difference was noted in the distribution of the variant alleles between males and females. The significance of the high frequency of the S allele is related to the ethnic origin of this population. The agreement of the results obtained by our technique and by acid-starch gel electrophoresis confirms the validity of Pi determination by thin-layer isoelectric focusing.     

PiT: A new allele in the alpha1-antitrypsin system

Summary In a genetic investigation of the population in Hessen, Germany, we found a family with a new, rare allele in the Pi system (₁-antitrypsin). According to electrophoretic analysis and isoelectric focusing patterns, it is designated Pi ^T. A pedigree study suggests autosomal codominant inheritance. The serum concentration of six heterozygous carriers of this allele (phenotype M1T or M2T) revealed normal ₁-antitrypsin levels.     

Linkage studies on the human Pi,Gm, GLO,and HLA genes

Summary Linkage data of the four gene markers Pi, Gm, GLO, and HLA exclude Gm and Pi gene assignment to the short arm of chromosome 6. The findings, however, do not disprove the following gene order: HLA-GLO-centromere-Gm-Pi.     

Identification of Two Blast Resistance Genes in a Rice Variety, Digu

Blast, caused by Magnaporthe grisea is one of most serious diseases of rice worldwide. A Chinese local rice variety, Digu, with durable blast resistance, is one of the important resources for rice breeding for resistance to blast (M. grisea) in China. The objectives of the current study were to assess the identity of the resistance genes in Digu and to determine the chromosomal location by molecular marker tagging. Two susceptible varieties to blast, Lijiangxintuanheigu (LTH) and Jiangnanxiangnuo (JNXN), a number of different varieties, each containing one blast resistance gene, Pik^s, Pia, Pik, Pi‐b, Pi‐k^p, Pi‐ta², Pi‐ta, Pi‐z, Pi‐i, Pi‐k^m, Pi‐z^t, Pi‐t and Pi‐11, and the progeny populations from the crosses between Digu and each of these varieties were analysed with Chinese blast isolates. We found that the resistance of Digu to each of the two Chinese blast isolates, ZB13 and ZB15, were controlled by two single dominant genes, separately. The two genes are different from the known blast resistance genes and, therefore, designated as Pi‐d(t)1 and Pi‐d(t)2. By using bulked segregation method and molecular marker analysis in corresponding F₂ populations, Pi‐d(t)1 was located on chromosome 2 with a distance of 1.2 and 10.6 cM to restriction fragment length polymorphism (RFLP) markers G1314A and G45, respectively. And Pi‐d(t)2 was located on chromosome 6 with a distance of 3.2 and 3.4 cM to simple sequence repeat markers RM527 and RM3, respectively. We also developed a novel strategy of resistance gene analogue (RGA) assay with uneven polymerase chain reaction (PCR) to further tag the two genes and successfully identified two RGA markers, SPO01 and SPO03, which were co‐segregated toPi‐d(t)1 and Pi‐d(t)2, respectively, in their corresponding F₂ populations. These results provide essential information for further utilization of the Digu's blast resistance genes in rice disease resistance breeding and positional cloning of these genes.     

Purine nucleoside phosphorylase from <Emphasis Type="Italic">Pseudoalteromonas</Emphasis> sp. Bsi590: molecular cloning,gene expression and characterization of the recombinant protein

The gene encoding purine nucleoside phosphorylase (PNP) from the cold-adapted marine bacterium Pseudoalteromonas sp. Bsi590 was identified, cloned and expressed in Escherichia coli. The gene encodes a polypeptide of 233 amino acids with a calculated molecular weight of 25,018 Da. Pseudoalteromonas sp. Bsi590 PNP (PiPNP) shares 60% amino sequence identity and conservation of amino acid residues involved in catalysis with mesophilic Escherichia coli deoD-encoded purine nucleoside phosphorylase (EcPNP). N-terminal his-tagged PiPNP and EcPNP were purified to apparent homogeneity using Ni²⁺-chelating column. Compared with EcPNP, PiPNP possessed a lower temperature optimum and thermal stability. As for PNP enzymes in general, PiPNP and EcPNP displayed complicated kinetic properties; PiPNP possessed higher K _m and catalytic efficiency (k _cat/K _m ) compared to EcPNP at 37°C. Substrate specificity results showed PiPNP catalyzed the phosphorolytic cleavage of 6-oxopurine and 6-aminopurine nucleosides (or 2-deoxynucleosides), and to a lesser extent purine arabinosides. PiPNP showed a better activity with inosine while no activity toward pyrimidine nucleosides. The protein conformation was analyzed by temperature perturbation difference spectrum. Results showed that PiPNP had lower conformation transition point temperature than EcPNP; phosphate buffer and KCl had significant influence on PiPNP protein conformation stability and thermostability.     

Investigations on the population genetics of the α1-antitrypsin polymorphism

Summary The results of Pi-typing on 2647 individuals from 9 populations are reported. Of the 17 phenotypes and 9 alleles described in literature, we found 12 phenotypes and 8 alleles. The population smaples differ characteristically in their allele frequencies. The allle Pi^M appears constantly in all populations tested with a frequency of more than 0.85. The alleles Pi^F (0.01–0.11), Pi^S (0.01–0.02) and Pi^Z (0.01–0.02) were also relatively frequent in all samples. All the other alleles remain below 0.01. A great increase in the number of Pi-variants was observed in the Central European area. The frequency of ₁-at variants in various populations is discussed.Supported by the Deutsche Forschungsgemeinschaft.Dedicated to Prof. W. Lehmann, Kiel, on his 65th birthday.     

Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice

Three major genes (Pi1, Piz-5 and Pita) for blast resistance on chromosomes 11, 6 and 12, respectively, were fine-mapped and closely linked RFLP markers identified. New markers for Pi1 and Pita were found that were flanking the genes. The three genes were pyramided using RFLP markers. A PCR-based SAP (sequence amplified polymorphism) marker was used to identify Piz-5 in the segregating population. The plants carrying the two- and three-gene combinations that were tested for resistance to leaf blast in the Philippines and India indicated that combinations including Piz-5 have enhanced resistance than when it is present alone. The genes from the pyramided lines are at present being deployed into agronomically superior ricevarieties by marker-aided selection (MAS). Received: 20 June 1997 / Accepted: 14 September 1999     

The porcine M blood group system: evidence to suggest assignment of its Ml factor to a new system (P)

A new allele M^aejm and a more precise genetic analysis of the Ml factor previously assigned to the M system are described after screening three generation families (Wild Boar × Pietrain, Meishan × Pietrain) for the M blood group system using a complete set of 13 M reagents. From informative families with proven parental M genotypes it was shown that the Ml antigen is controlled by an allele from another system. We propose to designate this new system P and to change the factor designation from Ml to Pa.     

Isolation of a new paramutagenic allele of thesulfurea locus in the tomato cultivar Moneymaker following in vitro culture

A new allele, SC148, of thesulfurea locus inLycopersicon esculentum was detected in a line derived after repeated selfing of plants that had been regenerated from tissue culture. Like the originalsulf mutant, SC148 displayed two mutant phenotypes: green-yellow speckled plants in which thesulf ^vag allele is present and pure yellow plants homozygous for thesulf ^tpura allele. Although the mutant alleles are recessive to wild-type, an unpredictable number of variegated and pura plants appeared in F₁ progenies that had been derived from crosses between SC148 and wild-type tomato plants. The presence of the wild-typesulf ⁺ allele in these variegated heterozygotes was demonstrated using a cytological marker that is linked tosulf. It is concluded that the mutantsulf allele of SC148, imposes its variegated expression state on the wild-typesulf ⁺ allele present insulf ⁺/sulf^vag heterozygotes. This behaviour, known as paramutation, has also been described for the originalsulf allele. The SC148 allele, however, seems to induce changes at an earlier stage in development. The analogy of this paramutagenic system to dominant position effect variegation inDrosophila is discussed.     

Alpha1-antitrypsin levels and electrophoretic patterns of several deficient phenotypes

Summary Two alleles, Pi^Z and Pi^S, are associated with lower than normal alpha₁-antitrypsin concentrations and lower trypsin inhibiting activities in human serum. The phenotypes that result due to heterozygosity or homozygosity for these alleles can be distinguished with electrophoretic procedures. The alpha₁-antitrypsin concentrations of several phenotypes overlap so that the phenotypes can be determined with certainty only by an electrophoretic procedure.

---

Zusammenfassung Die zwei Allele Pi^Z and Pi^S führen zu subnormalen Konzentrationen von Alpha₁-Antitrypsin und niedrigen Trypsinhemmaktivitäten im menschlichen Serum. Die durch Hetero- und Homozygotie für diese Allele entstehenden Phänotypen können durch elektrophoretische Methoden unterschieden werden. Die Alpha₁-Antitrypsin-Konzentrationen der verschiedenen Phänotypen überlappen, so daß eine sichere Erkennung nur durch elektrophoretische Methoden möglich ist.

---

---

This work was supported in part by Deutsche Forschungsgemeinschaft and Joachim Jungius-Gesellschaft der Wissenschaften Hamburg.     

Endobronchial Ultrasound Reliably Quantifies Airway Smooth Muscle Remodeling in an Equine Asthma Model

Endobronchial ultrasonography (EBUS) revealed differences in the thickness of the layer representing subepithelial tissues (L2) between human asthmatics and controls, but whether this measurement correlates with airway smooth muscle (ASM) remodeling in asthma is unknown. In this study, we sought to determine the ability of EBUS to predict histological ASM remodeling in normal and equine asthmatic airways. We studied 109 isolated bronchi from the lungs of 13 horses. They underwent EBUS examination using a 30 MHz radial probe before being processed for histology. ASM remodeling parameters were evaluated in EBUS images (L2 thickness, L2 area, L2 area/internal perimeter [Pi] and L2 area/Pi²) and histological cuts (ASM area/Pi²), and compared. EBUS was then performed ex vivo on the lungs of 4 horses with heaves, an asthma-like condition of horses, and 7 controls to determine whether central bronchial remodeling could be detected with this technique. An optimized approach was developed based on data variability within airways, subjects, and groups, and then validated in 7 horses (3 controls, 4 with heaves) that underwent EBUS in vivo. L2 area was significantly associated to ASM area in isolated lungs (p<0.0001), in the absence of significant bias related to the airway size. Bronchial size significantly affected EBUS ASM-related parameters, except for L2 area/Pi². L2 area/Pi² was increased in the airways of asthmatic horses compared to controls, both ex vivo and in vivo (p<0.05). Bronchial histology confirmed our findings (A_ASM/Pi² was increased in asthmatic horses compared to controls, p<0.05). In both horses with heaves and controls, L2 was composed of ASM for the outer 75% of its thickness and by ECM for the remaining inner 25%. In conclusion, EBUS reliably allows assessment of asthma-associated ASM remodeling of central airways in a non-invasive way.     

A new α2HS-glycoprotein allele (AHS * 5 ⋆) in two Japanese families

Summary Serum specimens of two unrelated Japanese males had a new variant of the ₂HS-glycoprotein phenotypes. They had unusual bands designated AHS 5. Family studies indicated that the new variant phenotypes were determined by a new allele, AHS ^* 5, in combination with a common allele AHS ^* 1 or AHS ^* 2, and that the new allele had an autosomal codominant inheritance with other AHS alleles. The frequency of the new ₂HS-glycoprotein allele, AHS ^* 5, is 0.0005.We use the designation AHS to denote the ₂HS-glycoprotein phenotype and allele in agreement with nomenclature guidelines (Shows et al. 1979)     

Alpha1-antitrypsin: Physiology,genetics and pathology

Summary Alpha₁-antitrypsin (₁) is a glycoprotein in human serum that inhibits the enzymatic activity of trypsin and other proteolytic enzymes. Its concentration in normal serum is 200–250 mg/100 ml. In certain physiological and pathological situations, such as pregnancy, under contraceptive medication and during inflammation, the level of ₁-at is elevated. The physiological role of ₁ is not known, but the interaction with proteolytic enzymes from white blood cells is probably important. Electrophoretic techniques distinguish several phenotypes, which can be explained by the existence of several codominant alleles at one locus (probably the structural locus). Two alleles Pi^Z and Pi^S cause low concentrations of ₁-at in serum: the approximate concentrations of ₁-at for the different phenotypes are Z/Z 10%, M/Z 50–60%, S/S 60%, M/S 80%, where the level of 212 mg/100 ml found in the M/M phenotype is taken as 100%; thus the effect of these alleles on the ₁-at concentration is additive. Homozygosity for the Pi^Z allele is strongly associated with chronic obstructive lung disease and there is also an association of COPD and heterozygosity for the Pi^Z or Pi^S or both, but to a lesser degree.

---

Zusammenfassung ₁-Antitrypsin (₁-at) ist ein Glykoprotein des menschlichen Serums. Es hemmt die enzymatische Aktivität von Trypsin und anderen proteolytischen Enzymen. Die Konzentration in normalem Serum beträgt etwa 200–250 mg/100 ml. Unter bestimmten physiologischen und pathologischen Bedingungen, z. B. während der Schwangerschaft, nach Verabreichung von Ovulationshemmern und während einer Infektion, ist der Serumspiegel des ₁-at erhöht. Die genaue physiologische Funktion des ₁-at ist unbekannt, wahrscheinlich ist aber die Hemmung von proteolytischen Enzymen aus Leukocyten von Bedeutung. Mit Hilfe elektrophoretischer Methoden kann man einige Phänotypen unterscheiden. Diese Phänotypen können durch mehrere codominante Allele an einem Locus, wahrscheinlich dem Strukturlocus, erklärt werden. Zwei Allele, Pi^Z und Pi^S, verursachen niedrige Konzentrationen von ₁ im Serum: Die ungefähren Serumkonzentrationen von ₁-at der verschiedenen Phänotypen sind: Z/Z 10%, M/Z 50–60%, S/S 60%, M/S 80%; die Konzentration von 212 mg/100 ml des M/M-Phänotyps ist hier gleich 100% gesetzt. Die Wirkung der verschiedenen Allele auf die ₁-at ist also additiv. Homozygotie für das Pi^Z-Allel ist statistisch signifikant mit chronisch obstruktivem Lungenemphysem assoziiert. Eine geringere, aber ebenfalls statistisch signifikante Assoziation mit chronisch obstruktivem Lungenemphysem besteht auch für die Heterozygotie Pi^M/Pi^Z und Pi^M/Pi^S oder nur für eine von beiden Heterozygotien.

---

---

Recipient of a stipendium from Deutsche Forschungsgemeinschaft.     

Isoelectric focusing studies of human red cell esterase D: Evidence for polymorphic occurrence of a new allele EsD 7 in Japanese

Summary The isoelectric focusing study of esterase D in Japanese revealed evidence of a new polymorphic allele (EsD ⁷) which is difficult to find by conventional starch gel electrophoresis only. A comparison with the occurrence of a subdivision of EsD ² in Caucasians (EsD ⁵) suggests a remarkable difference in allele distribution of esterase D among races. Quantitative analysis showed a relatively low value of enzyme activity for this new allele. It is therefore emphasized that in addition to conventional electrophoresis, enzyme assay and further detection by isoelectric focusing are essential in analyzing the esterase D system.     

Polymorphism analysis of genomic regions associated with broad-spectrum effective blast resistance genes for marker development in rice

Cultivated European rice germplasm is generally characterized by moderate to high sensitivity to blast, and blast resistance is therefore one of the most important traits to improve in rice breeding. We collected a panel of 25 rice genotypes containing 13 broad range rice resistance genes that are commonly used in breeding programs around the world: Pi1, Pi2, Pi5, Pi7, Pi9, Pi33, Pib, Pik, Pik-p, Pita, Pita ² , Piz and Piz-t. The efficiency of the selected Pi genes towards Italian blast pathotypes was tested via artificial inoculation and under natural field infection conditions. To characterize haplotypes present in the chromosomal regions of the blast resistance genes, a polymorphism search was conducted in the sequence regions adjacent to the blast resistance by examining DNA from the Pi gene donors with a panel of 5–7 potential receivers (cultivated European rice genotypes). Seven InDel and 8 presence/absence polymorphisms were directly detected by gel analysis after DNA amplification, while sequencing of 12.870 bp through 32 loci in different genotypes revealed 85 SNP (one SNP every 151 bp). Seven SSRs were additionally tested revealing 5 polymorphic markers between donors and receivers. Polymorphisms were used to develop 35 PCR-based molecular markers suitable for introgressing of Pi genes into a set of the European rice germplasm. For this last purpose, allelic molecular marker variation was evaluated within a representative collection of about 95 rice genotypes. Polymorphic combinations allowing introgression of the broad spectrum resistance genes into a susceptible genetic background have been identified, thus confirming the potential of the identified markers for molecular-assisted breeding.