BROWN ROOT ROT OF TOMATOES: II. THE FUNGAL FLORA OF THE RHIZOSPHERE

The fungal populations of soil and of the rhizosphere of tomatoes in steamed, fallowed and unsteamed plots were compared. Steaming greatly reduced the numbers of fungi in the soil, but fallowing had little effect. Soil bacteria were greatly reduced by steaming but increased to the level in the unsteamed plots after heavy watering. Outer rhizosphere fungal populations in unsteamed plots in July were larger than in the steamed plots, but by October this difference had disappeared, although roots in the unsteamed soil showed the greater development of disease.
Root surface counts indicated that the populations on actively growing roots in July in steamed and unsteamed plots reached similar levels, and there was a slight fall in numbers in both types of plot in October. Fungal infection of roots increased noticeably in unsteamed plots between July and October, although root surface numbers showed a decrease.
Of the fungal species isolated Colletotrichum atramentarium showed a distribution between soil and root surface which suggested that it was a root inhabiting fungus. Cephalosporium spp. were also found on the root surface and in roots, especially those from steamed soil.     

Root hairs and phycomycetous mycorrhizas in phosphorus-deficient soil

Summary Coprosma robusta formed phycomycetous mycorrhizas in unsteamed forest soil and grew equally well with or without added phosphate. In steamed soil it did not grow unless phosphate was added. Of the other species tested (Leptospermum scoparium, Solanum nigrum, Lolium perenne, Hakea enkiantha, Histiopteris incisa, Marchantia berteroana) most formed mycorrhizas in unsteamed soil, but all grew better in steamed soil. The dry matter of the mycorrhizal Coprosma seedlings contained the highest concentration of phosphorus, but the relatively large plants that the other species produced in steamed soil contained a greater total quantity. It is suggested that this entered mainly through their extensive root hairs (or rhizoids), and that lack of root hairs in Coprosma and other woody species explains their need for added phosphate when mycorrhizas are not formed.     

Studies on the manganese uptake of lettuce on steam-sterilised glasshouse soils

Summary During steam sterilisation of glasshouse soils appreciable amounts of easily reducible manganese are converted into exchangeable manganese. The reverse process takes place much more gradually. As a result, manganese toxicity occurs in several crops on newly steamed soils. In the Netherlands, lettuce has been found to be particularly prone to manganese toxicity. An investigation was carried out to obtain more information about the manganese status of steamed glasshouse soils in which lettuce was used as the test crop. The following results were noted.The uptake of exchangeable manganese is easier in the lighter soils than in heavy soils. Application of iron to the soil inhibits manganese uptake by the plant, but the iron must be applied in the form of chelate. The pH has a profound effect on manganese uptake on steamed as well as on unsteamed soils. However, the relationship between the pH and the manganese content of the crop on steamed soils is different from that found on unsteamed soils.The slow rate of oxidation of manganese in steamed glasshouse soil may be explained by the fact that the oxidising bacteria are killed during the steam sterilisation process. The fixation of manganese can be accelerated appreciably by inoculating the steamed soil with manganese-oxidising bacteria.The effect on manganese uptake of five soil desinfection chemicals used in the investigation proved to be very small.The lettuce varieties used in the Netherlands show a wide variation in susceptibility to manganese toxicity. This cannot be explained by different rates of manganese uptake. It is more likely that the varietal differences are based on different levels of resistance to manganese present in the plants.     

Effects of cultural treatments on the incidence of, and damage done by, tomato brown root rot

In soils naturally infested with Pyrenochaeta lycopersici, which usually occurs as a grey sterile fungus (GSF), symptoms of brown root rot (BRR) developed sooner and more extensively in the second year of cropping than in the first. The amount of BRR attributable to corkiness increased as plants aged but, at comparable stages of cropping, decreased in the second and third seasons, an effect associated inversely with the severity of early GSF attack. The larger amount of corkiness, 33 compared with 18 %, on two batches of plants in 1965, each with 53 % end-of-season BRR, was also attributed to a less severe early GSF attack on the former than on the latter, growing in soils unsteamed for 1 and 3 years respectively. The incidence of BRR decreased with increasing depth in infested soils but increased on plants grown in plots with partially sterilized topsoil. Partially sterilizing soils at the G.C.R.I. and Fairfield E.H.S. decreased the incidence of BRR and increased crop weights from about the second month of picking, but fruit quality was poorer. Seasonal yields from plants in untreated soil progressively decreased relatively to those from repeatedly steamed plots, from 93 to 65 % in successive years at Fairfield and from 65 to 56 and 43 % at the G.C.R.I. Steaming done in 1963 and 1964 temporarily retarded GSF attack in 1965 with corresponding yield increases. Increasing the amounts of sterilized propagating soil surrounding roots at planting from 0·4 to 1·01 per plant increased yields by c. 0·4 kg/plant, this being a relatively large increase for plants in infested soil, where this treatment significantly delayed the early incidence of BRR near stem bases. Grafting commercially acceptable scions to rootstocks that tolerated colonization by GSF (‘resistant’ rootstocks), temporarily checked growth, delayed picking and decreased fruit quality. Usually grafted plants, irrespective of soil treatment, yielded at least as much fruit as ungrafted plants in steamed soil. In one of five comparisons, soil steaming increased yields of grafted plants. When testing the effects of previous cropping it seemed that populations of GSF increased similarly in soils planted with grafted and ungrafted plants. In addition to GSF attack, roots at Fairfield E.H.S. were often colonized by Colletotrichum coccodes, microsclerotia (= black dots) being more numerous as plants aged. Although significantly more black dot developed on GSF-resistant rootstocks grown in untreated soil than on those grown in steamed soil, the differences were not associated with effects on yield. C. coccodes colonized GSF-susceptible and -resistant roots equally.     

BROWN ROOT ROT OF TOMATOES

Tomato roots with brown root rot showed three types of lesion: cortical rot of fine roots, 'corky root', and basal stem rot. The fungi most commonly isocated from diseased roots were: Colletotrichum atramentarium, Chaetomium spp., Cephalosporium spp., Volutella ciliata , and a grey mycelial fungus sometimes producing pycnidia ( Pyrenochaeta sp.). Other fungi isocated less frequently were: Myrothecium roridum, Petriella asymmetrica, Trichoderma airide, Phytophthora spp., Alternaria sp. and Fusarium spp. There were differences between the numbers of each species isocated from the three types of lesion in steamed and in unsteamed soils, and some seasonal variation.
Inoculation experiments with seedlings in vitro showed that Ckaetomium cochliodes and Petriella asymmetrica could infect radicles. On older plants growing in soil Colletotrichum atramentarium was the only effective pathogen. Culture filtrates from C. atramentarium, Chaetomium cochliodes , and P. asymmetrica decreased root growth when tested in vitro. Leachates from loam and a loam-manure mixture decreased the growth of tomato root-tip cultures; the effect of these leachates was altered by autoclaving.     

THE EFFECT OF CERTAIN SOIL TREATMENTS ON DIDYMELLA STEM ROT OF TOMATOES PART I. GLASSHOUSE EXPERIMENTS

When tomatoes were planted in steamed soil inoculated with spores of Didymella lycopersici Kleb., a large proportion became infected, but very few became infected in unsteamed soil similarly inoculated. In soil treated with formalin and subsequently inoculated the number of diseased plants was about half that in steamed soil. Reinfecting steamed soil with soil micro-organisms before inoculation with D. lycopersici reduced the amount of disease. Covering steamed soil with a layer of maiden loam filtered out a large proportion of D. lycopersici spores applied in water suspension and reduced the amount of disease. Addition of stable manure either before or after steaming did not affect the number of diseased plants. Steamed soil remained susceptible to infection by D. lycopersici for 4 months. D. lycopersici survived in a glasshouse soil over the winter, but the number of diseased plants was small. Cultivation may lessen the amount of disease by burying most of the infected surface layers of the soil. The peak of infection under glass occurred in May. The amount of disease and the yield were correlated, but with severe infection the yield varied with the time of infection and the distribution of diseased plants.     

Relationships between plant roots,proteolytic organisms and activity of protease

Proteolytic bacteria represented 18–58% of the bacterial population isolated from the rhizoplane of different crops. The activity of protease was considerably higher on roots of wheat growing in the soil than in the rhizosphere or free soil. However, only a slightly positive rhizosphere effect in the relative occurrence of casein-hydrolyzing bacteria could be observed. An indirect relationship between numbers of bacteria hydrolyzing casein and the activity of the enzyme could be found. The activity of protease related to a unit of culturable proteolytic bacteria was considerably higher on the root than in the rhizosphere and in the soil. A relationship between characteristics of the production of the enzyme by proteolytic bacteria and the protease activity on the surface of roots was demonstrated. The resulting enzyme activity on the surface of roots depended apparently on growth conditions of the plant and nature of root exudates and was influenced both by inactivation and protection due to adsorption of the enzyme by roots.     

Nutritional risk screening in hospitalized and haemodialysis patients

Malnutrition is an independent risk factor impacting on higher complications and increased length of hospital stay and costs. The aim of this study was to determine the prevalence of nutritional risk among patients on regular haemodialysis (HD) (Group I, N = 105) and among the patients at Gastroenterology, Endocrinology, Hematology and Clinical Immunology (Group II, N = 652). Cross-sectional nutritional evaluation was done using Nottingham Hospital Screening Tool (NS). The prevalence of nutritional risk was 9% in Group I and 21% in Group II (p = 0.0002). We found statistically significant larger quantity of malnourished patients among acute internistic patients than among chronic from the same Group II. Malnutrition among patients on HD didn't differ statistically to chronic internistic patients. We didn't found a significantly higher percentage of nutritional risk among elderly patients (65 years and more). Correlation between body mass index (BMI) and NS was significant, but weak (r = -0.32). We can conclude that the prevalence of nutritional risk among HD patients was lower than we had expected. It seems that the screening tool we used is not sensitive enough for HD patients and needs further investigations.     

放线菌制剂对人参生长及根域土壤微生物区系的影响

以小兴安岭地区人参为研究对象,探索放线菌制剂对人参的促生效应及对人参根区、根表土壤微生物区系的影响.结果表明： 经放线菌制剂Streptomyces pactum（Act12）处理后,人参药用部分产量增加,品质改善;叶片诱导酶活性提高,根系活力增强;土壤中细菌、放线菌的数量和比例显著增加,真菌的数量和比例减少.与对照相比,土壤微生物区系结构改变:优势菌荧光假单胞菌、韩国假单胞菌和氧化微杆菌在根区、根表土壤中的数量大幅提高;病原真菌烟色织孢霉在根区土壤中减少,在根表土壤中消失.表明施用放线菌制剂Act12能够改善土壤微生物区系,提高人参植株的抗性和根系活力,增加产量并改善品质.     

3株芽孢杆菌对番茄的促生作用及对番茄根域微生物的影响

通过种子萌发和盆栽促生试验研究3株芽孢杆菌Bs10、Ba12和Bl10对番茄的促生作用及其对番茄根域微生物区系的调节作用.结果表明: 3株芽孢杆菌对番茄种子的胚轴、胚根和番茄植株的生长有明显的促进作用,处理后番茄根系的总长度、总表面积和总体积均显著增加;处理后土壤中细菌数量和比例显著增加,真菌数量和比例明显减少.与对照相比,土壤微生物区系优势菌数量发生改变:优势甲基营养型芽孢杆菌在番茄根区、根表土壤中和根内的数量大幅提高;病原真菌腐皮镰刀菌和尖孢镰刀菌在根区和根表土壤中的数量显著减少.推知芽孢杆菌对根系微生物区系的调节作用是其发挥防病促生作用的重要机制之一.     

Comparative study of growth-promoting capacity of some insecticides/nematicides

Summary The growth promoting capacity of the insecticides/nematicides, Curater (2,3-dihydro-2,2-dimethylbenzofuran-7-yl methylcarbamate), Temik (2-methyl-2-(methylthio) propionaldehyde 0-(methylcarbamoyl) oxim and Mocap (0-ethyl S, S-Dipropyl phosphorodithioate) were compared. For each product, three equimolar doses were applied: 1.3×10⁻³, 2.6×10⁻³ and 5.2×10⁻³ molar per m². The treatments were applied to a field soil, part of which was untreated, part of which was steamed to test the direct effect of the products on the test plants. In the first experiment wheat, lettuce and mungbeans were sown immediately after broad cast application of the insecticides. In the second experiment three maize cultivars (Suroit, Breda and LG 12) were used as test plants: one half of the soil was treated with the insecticides just before sowing the maize, the other half was originally treated in the previous experiment. Considering the effect on growth (the weight of the two months old wheat and lettuce plants and the length of the mungbeans) in unsteamed and steamed soil increasing amounts of Mocap had a negative effect on the growth of beans and wheat: in contrast the weight of the lettuce was markedly increased. Curater 5G and Temik 10G had no influence on the mungbeans and a slightly positive effect on the growth of lettuce. The growth of wheat was slightly decreased by Temik 10G and slightly increased by Curater 5G. The growth of maize was decreased by increasing amounts of Mocap in both steamed and unsteamed soil. However, in plots treated in the previous experiment the reverse effect was observed, growth being slightly improved.     

Different populations of bacteria associated with sheathed and bare regions of roots of field-grown maize

It has been previously shown that soil sheaths cling tightly to some portions of all axile roots and cover all but the growing tips of the young roots of field-grown maize. These sheaths overlie immature regions of the roots which have intact epidermal cells with root hairs, and living, thus non-conducting, late metaxylem elements. Loss of the soil sheath in the proximal region coincides with the opening of these large metaxylem vessels. Now, total, and viable counts have been recorded of bacteria associated with the root surface and adhering soil of sheathed and bare regions. These showed some common features, in that populations of similar size were associated with the two root regions in plants beginning to flower. Each population included about the same numbers of bacteria that were viable on each of three selective media (nitrogen-free, Pseudomonas F or MacConkey). However, more spore-formers capable of growth on nitrogen-free media and more fluorescent bacteria were isolated from the sheathed regions. Actinomycetes were absent from sheathed but plentiful on bare regions.The high numbers of diverse types of bacteria associated with both root surfaces can be related to the previously demonstrated similarity in amounts of organic carbon released from each region. The proliferation of actionomycetes on the bare roots and their exclusion from sheathed roots may in part be due to the lower water status of the bare region, which is related to its greater axial conducting capacity. Thus the distribution of the two types of root surface within an individual root system has important implications for the choice of root and rhizosphere sampling techniques and for root bacterization work.     

Reduction of population levels of some indigenous bacteria by lactobacilli in the gastrointestinal tract of gnotobiotic rats.

Effects of each of three indigenous Lactobacillus groups on other bacterial populations were separately investigated in gnotobiotic rats. In the wall of the non-glandular part of the stomach, contents of the stomach and contents of the upper part of the small intestine, some pre-associated indigenous bacteria were reduced to conventional population levels by introducing three groups of lactobacilli: Group I (Lactobacillus acidophilus and related strains), Group II (L. fermentum) and the groups mixed. However, no obvious reduction in cell numbers of the pre-associated bacteria occurred in the case of Group III (L. murini).     

Populations of Aerobic Bacteria Associated with the Roots of Apple and Cherry Plants

S ummary . The incidence of bacteria on the surface of apple and cherry roots was compared over a period of 20 months with those in rhizosphere and root-free soils. Seasonal variation in total and in Gram negative bacterial populations in soils and on roots was essentially similar. The highest numbers occurred between November and March and the lowest in September. Little general stimulation of bacteria near roots was detected and, on occasion, negative values were recorded for rhizosphere effect. The results indicated that edaphic factors rather than root activity had the major influence on population levels. Fluorescent pseudomonads were low in number and this suggests either that fruit tree roots were unable to support large numbers of these bacteria or that colonization from the soil populations was irregular. However, in contrast to other bacteria, there was a marked stimulatory effect on fluorescent pseudomonads, particularly in apple rhizo-spheres where a maximum rhizosphere/soil ratio of 131 was recorded.     

Mineralisation of carbon and plant uptake of phosphorus from microbially-derived organic matter in response to 19 years simulated nitrogen deposition

Here we test the hypotheses that 19 years of simulated pollutant N deposition increases both losses of carbon (C) and the ability of plants to access P from organic material in upland heathland. The grass, Dactylis glomerata, and the dwarf shrub, Calluna vulgaris, were grown in soil containing microbial-derived organic matter labelled with ¹⁴C and ³³P. We found that both soil and root-surface phosphatase activity increased significantly in response to N deposition. We also found a significant positive relationship between root-surface phosphatase activity and ³³P uptake for Calluna, but a negative relationship for Dactylis. Efflux of ¹⁴C from the microbial-derived organic matter was strongly dependent on an interaction among plant presence, plant species and N deposition. Our results show that mineralisation of C and P, and subsequent plant uptake of P from organic sources is decoupled. In our experimental conditions, stimulation of P turnover coupled with subsequent plant uptake through up-regulation of root phosphatases is little affected by N addition. However, our data indicate that root-surface phosphatases are likely to be more important for uptake of P derived from organic sources for Calluna than for Dactylis.     

Phenotypic variation of Pseudomonas brassicacearum as a plant root-colonization strategy

Pseudomonas brassicacearum was isolated as a major root-colonizing population from Arabidopsis thaliana. The strain NFM421 of P. brassicacearum undergoes phenotypic variation during A. thaliana and Brassica napus root colonization in vitro as well as in soil, resulting in different colony appearance on agar surfaces. Bacteria forming translucent colonies (phase II cells) essentially were localized at the surface of young roots and root tips, whereas wild-type cells (phase I cells) were localized at the basal part of roots. The ability of phase II cells to spread and colonize new sites on root surface correlates with over-production of flagellin as evidenced by sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis of surface proteins and microsequencing. Moreover, phase II cells showed a higher ability to swim and to swarm on semisolid agar medium. Phase I and phase II cells of P. brassicacearum NFM421 were tagged genetically with green fluorescent protein and red fluorescent protein. Confocal scanning laser microscopy was used to localize phase II cells on secondary roots and root tips of A. thaliana, whereas phase I cells essentially were localized at the basal part of roots. These experiments were conducted in vitro and in soil. Phenotypic variation on plant roots is likely to be a colonization strategy that may explain the high colonization power of P. brassicacearum.     

Plant root excretions in relation to the rhizosphere effect

Summary 1. The treatment of soil with root exudate solution resulted in increased numbers of Gram-negative bacteria.2. The oxygen uptake and nitrification of root exudate treated soils were no greater than the controls unless readily decomposable substances such as glucose or peptone were added.3. The release of phosphate from soil organic matter or yeast nucleic acid was not increased with root exudate supplements.     

Changes in microbial activity and composition in a pasture ecosystem exposed to elevated atmospheric carbon dioxide

Elevated atmospheric CO₂ increases aboveground plant growth and productivity. However, carbon dioxide-induced alterations in plant growth are also likely to affect belowground processes, including the composition of soil biota. We investigated the influence of increased atmospheric CO₂on bacterial numbers and activity, and on soil microbial community composition in a pasture ecosystem under Free-Air Carbon Dioxide Enrichment (FACE). Composition of the soil microbial communities, in rhizosphere and bulk soil, under two atmospheric CO₂ levels was evaluated by using phospholipid fatty acid analysis (PLFA), and total and respiring bacteria counts were determined by epifluorescence microscopy. While populations increased with elevated atmospheric CO₂ in bulk soil of white clover (Trifolium repens L.), a higher atmospheric CO₂ concentration did not affect total or metabolically active bacteria in bulk soil of perennial ryegrass (Lolium perenne L.). There was no effect of atmospheric CO₂ on total bacteria populations per gram of rhizosphere soil. The combined effect of elevated CO₂ on total root length of each species and the bacterial population in these rhizospheres, however, resulted in an 85% increase in total rhizosphere bacteria and a 170% increase in respiring rhizosphere bacteria for the two plant species, when assessed on a per unit land area basis. Differences in microbial community composition between rhizosphere and bulk soil were evident in samples from white clover, and these communities changed in response to CO₂ enrichment. Results of this study indicate that changes in soil microbial activity, numbers, and community composition are likely to occur under elevated atmospheric CO₂, but the extent of those changes depend on plant species and the distance that microbes are from the immediate vicinity of the plant root surface.     

Species Richness and Abundance of Naked Amebae in the Rhizoplane of the Desert Plant Escontria chiotilla (Cactaceae)

ABSTRACT. The species richness and quantity of naked amebae were determined in the bulk soil and rhizoplane of the desert plant Escontria chiotilla in the Valley of Tehuacan, Mexico. Samples from bulk soil were taken at 10-cm and 30-cm depths in April, May and July, 1993, and from roots and soil at a 10-cm depth in June and July, 1994. Quantity of amebae obtained by Most Probable Number method increased in the rhizoplane by two orders of magnitude after rains. Likewise, the countable population of amebae doubled in numbers at both the 10- and 30-cm depths after rains. We isolated 163 strains from both root and soil environments, which were grouped into 40 bactivorous and/or generalist species belonging to 19 genera. Species richness showed no clear dominance of a particular genus in either bulk soil or root. Acanthamoeba (groups II and III, Pussard & Pons) and Vahlkampfia accounted for 12.5% and 15% of the total number of species, respectively. However, greater species richness was found in bulk soil than on root surfaces. We concluded that the diversity of naked amebae, taken as numbers of individuals (or as biomass) of each species and its evenness, is still needed to assess the ecological roles of Acanthamoeba and Vahlkampfia in the soil environment.     

高寒地区不同退化草地植被特性和土壤固氮菌群特性及其相关性

选取东祁连山不同退化程度的高寒草地为研究对象,调查研究其植物种类、植被盖度、高度、地上生物量等植物指标以及土壤好气性自生固氮菌和嫌气性自生固氮菌数量,在此基础上,采用real-time PCR的方法扩增nifH基因,测定不同退化程度草地土壤中固氮菌相对于土壤总细菌的量,以探讨草地退化过程中植被及土壤固氮菌群的变化规律,结果发现:随着退化程度的加深,草地植物种类逐渐减少,并且优势植物发生变化,毒杂草逐渐增多,植被的高度、盖度、地上生物量都逐渐降低。对土壤固氮菌的研究则表明,土壤好气性自生固氮菌和嫌气性自生固氮菌的数量在不同退化草地随草地退化程度的加重而减少,在同一退化程度草地土壤则是随土层深度加深而下降。对土壤固氮菌nifH基因扩增的结果也表明随着退化加剧,土壤固氮菌相对于土壤总细菌的比例在降低,进一步说明草地退化过程中土壤固氮菌不仅是数量上的下降,更是群落结构层面的变化。对植被特性和土壤固氮菌含量的相关分析表明,植被特性和土壤中固氮菌含量呈显著相关。研究从土壤固氮菌群的角度研究了草地退化的过程,说明了二者具有协同性,研究和治理草地退化必须重视土壤功能菌群尤其是固氮菌群的作用。