Detection of Coccidioides immitis in Kern County, California, by multiplex PCR

Coccidioides immitis is a fungal human pathogen endemic to semiarid soils in southern California and Baja California (Mexico). Results of culture-dependent detection of C. immitis in the past indicated a spotty distribution and unreliable prediction of C. immitis growth sites and accumulation sites. In this project we investigated bulk soil samples for the presence of the pathogen in nonagricultural loamy soils at nine different locations around Bakersfield, Kern County, California, for almost 2 y (2008-2009). To detect the pathogen we used a multiplex PCR method with optimized soil handling and storage, DNA extraction procedure and PCR protocol. With this method we were able to detect C. immitis in 8.42% of our samples in 2008 (n = 285), mostly from early spring to early summer. In 2009 however the percentage of samples positive for C. immitis from the same sites declined to 2.68% (n = 261). We also were able to distinguish C. immitis growth sites from accumulation sites. One site close to a recreation area (Lake Webb, Buena Vista Lake Basin), not previously known to support the growth of C. immitis, was identified as a strong growth site of the fungus. The cultivation-independent method in this study together with soil parameters can be used to predict and confirm C. immitis growth sites and might be a valuable tool for public health institutions.     

Distribution of burrows of the African giant rat (Cricetomys gambianus Waterhouse) in relation to soil characteristics

A study was made of soil characteristics in giant rat habitat in order to examine the possibility that the location of their burrows is related to soil texture and minerals. Physical and mineral analysis of soils from giant rat burrows have been carried out. Significant chemical differences were observed between soils from occupied or vacated burrows and from locations without burrows. Striking differences in correlation coefficients of different minerals (calcium, phosphorus, sodium, potassium and manganese) were observed in vacated and occupied burrows. The implication of these findings are discussed in relation to present knowledge of the animal's nutritional requirements.     

Soil properties affect the availability, movement, and virulence of entomopathogenic fungi conidia against puparia of Ceratitis capitata (Diptera: Tephritidae)

The Mediterranean fruit fly, Ceratitis capitata Wiedemann (Diptera: Tephritidae), is the major tephritid pest in the Mediterranean region. This insect may overwinter as pupae inside fruits or in soil. Therefore, infection with entomopathogenic fungi is a potentially useful control technique during the insect’s soil-dwelling stage. Entomopathogenic fungi have an important role in Integrated Pest Management programs as an alternative to conventional chemical control, but they have been usually selected on the basis of laboratory results with little regard to fungal ecology. In this work, we designed several experiments to study the availability and movement of the EF Beauveria bassiana (Balsamo) Vuill. and Metarhizium anisopliae (Metsch.) conidia in 16 soils differing widely in pH, texture, organic matter, and carbonate contents. Experiments of adsorption and drag of conidia by soil particles suspended in CaCl₂ solutions of different ionic strength showed B. bassiana conidia to be retained by clay particles, and this effect disappeared with increasing ionic strength. The availability of M. anisopliae conidia in the suspension tended to be lower for sandy than for clayey soils and was not influenced by ionic strength. Regardless of soil properties, over 90% of the added fungal propagules were recovered from the surface layer of columns of packed soils representing model combinations of texture (sandy or clayey) and pH values (acid or alkaline). However, retention of B. bassiana conidia in the surface layer was higher in clayey than in sandy soils, and the retention of M. anisopliae conidia in the surface layer was higher in sandy than in clayey soils. Finally, neither soil texture nor ionic strength affected the infectivity of conidia of both fungal strains to C. capitata puparia.     

The effect of application time and soil factors on the occurrence of Beauveria brongniartii applied as a biological control agent in soil

The effects of abiotic and biotic soil factors on occurrence of the entomopathogenic fungus Beauveria brongniartii after application at different times of the year were examined in Switzerland. Applications made from May to August generally resulted in an increase of 1-5 x 10(3) CFU g(-1) dry soil compared to untreated control plots. Conversely, soils treated in October and November yielded no increase. Soil temperatures between 20 and 25 degrees C, and high clay content of the soil had a positive effect on the occurrence and density of B. brongniartii whereas increased catalase activity and temperatures above 27 degrees C had a negative influence. Laboratory experiments revealed that a higher number of CFUs developed after one month of incubation at 22 degrees C than at 12 degrees C. Differences were not detected after three months of incubation, indicating that growth rate was simply slower at sub-optimal temperatures. The increase was different in three native soils, but was not correlated with different clay contents of the soil. In sterilized soil, though, the differences were not detected, suggesting that biotic factors have a greater influence rather than soil texture.     

Influence of soil texture, moisture, and surface cracks on the performance of a root-feeding flea beetle, Longitarsus bethae (Coleoptera: Chrysomelidae), a biological control agent for Lantana camara (Verbenaceae)

Laboratory studies were conducted to determine the influence of soil texture, moisture and surface cracks on adult preference and survival of the root-feeding flea beetle, Longitarsus bethae Savini and Escalona (Coleoptera: Chrysomelidae), a natural enemy of the weed, Lantana camara L. (Verbenaceae). Adult feeding, oviposition preference, and survival of the immature stages of L. bethae were examined at four soil textures (clayey, silty loam, sandy loam, and sandy soil), three soil moisture levels (low, moderate, and high), and two soil surface conditions (with or without surface cracks). Both soil texture and moisture had no influence on leaf feeding and colonization by adult L. bethae. Soil texture had a significant influence on oviposition, with adults preferring to lay on clayey and sandy soils to silty or sandy loam soils. However, survival to adulthood was significantly higher in clayey soils than in other soil textures. There was a tendency for females to deposit more eggs at greater depth in both clayey and sandy soils than in other soil textures. Although oviposition preference and depth of oviposition were not influenced by soil moisture, survival in moderately moist soils was significantly higher than in other moisture levels. Development of immature stages in high soil moisture levels was significantly slower than in other soil moisture levels. There were no variations in the body size of beetles that emerged from different soil textures and moisture levels. Females laid almost three times more eggs on cracked than on noncracked soils. It is predicted that clayey and moderately moist soils will favor the survival of L. bethae, and under these conditions, damage to the roots is likely to be high. This information will aid in the selection of suitable release sites where L. bethae would be most likely to become established.     

中国盐碱土壤中AM菌的生态分布

对我国盐碱土壤中丛枝菌根（Ａｒｂｕｓｃｕｌａｒ Ｍｙｃｏｒｒｈｉｚａ,ＡＭ） 菌的种属构成、生态分布状况进行了研究．结果表明,不同地区ＡＭ 菌种属构成不同,其种属组成、分布与土壤类型、碱化度和土壤有机质含量有关．盐渍化砂土、壤土和粘土中,Ｇｌｏｍｕｓ 属的真菌数量最多,Ａｃａｕｌｏｓｐｏｒａ 属次之,而Ｇｌｏｍｕｓ 属中的Ｇ．ｍｏｓｓｅａｅ 则是分布最为广泛的菌种．随土壤碱化度的增加,Ｇｌｏｍｕｓ ｍｏｓｓｅａｅ 出现频率随之相对增加．在一定范围内有机质含量越高,土壤中ＡＭ 菌种和属的种类就越多．ＡＭ 菌的种属组成因不同寄主植物而异,其中豆科植物根围中ＡＭ 菌分布的种属数量最多．     

Increase in pH stimulates mineralization of ‘native’ organic carbon and nitrogen in naturally salt-affected sandy soils

Large amounts of terrestrial organic C and N reserves lie in salt-affected environments, and their dynamics are not well understood. This study was conducted to investigate how the contents and dynamics of ‘native’ organic C and N in sandy soils under different plant species found in a salt-affected ecosystem were related to salinity and pH. Increasing soil pH was associated with significant decreases in total soil organic C and C/N ratio; particulate (0.05–2 mm) organic C, N and C/N; and the C/N ratio in mineral-associated (<0.05 mm) fraction. In addition, mineral-associated organic C and N significantly increased with an increase in clay content of sandy soils. During 90-day incubation, total CO₂-C production per unit of soil organic C was dependent on pH [CO₂-C production (g kg⁻¹ organic C) = 22.5 pH – 119, R ² = 0.79]. Similarly, increased pH was associated with increased release of mineral N from soils during 10-day incubation. Soil microbial biomass C and N were also positively related to pH. Metabolic quotient increased with an increase in soil pH, suggesting that increasing alkalinity in the salt-affected soil favoured the survival of a bacterial-dominated microbial community with low assimilation efficiency of organic C. As a result, increased CO₂-C and mineral N were produced in alkaline saline soils (pH up to 10.0). This pH-stimulated mineralization of organic C and N mainly occurred in particulate but not in mineral-associated organic matter fractions. Our findings imply that, in addition to decreased plant productivity and the litter input, pH-stimulated mineralization of organic matter would also be responsible for a decreased amount of organic matter in alkaline salt-affected sandy soils.     

不同冬小麦品种在3种质地土壤中氮代谢特征及利用效率分析

为明确不同土壤质地条件下不同品种冬小麦(Triticum aestivum)的氮代谢和利用特征, 筛选与土壤质地相适宜的高产和氮高效利用的优质小麦品种, 采用大田试验的方法, 在同一生态类型区砂土、壤土和黏土3种质地土壤上, 以当地生产上大面积应用的强筋小麦‘郑麦366’ (‘ZM366’)和中筋小麦‘矮抗58’ (‘AK58’)、‘周麦22’ (‘ZM22’)为材料, 系统地研究了土壤质地对不同冬小麦品种主要生育时期叶片氨同化关键酶谷氨酰胺合成酶(GS)活性、游离氨基酸含量、花前和花后不同器官氮素积累和分配、氮素再分配等氮代谢过程及产量、品质和氮素利用效率等的影响。结果表明: 在这3种土壤质地上, 不同品种冬小麦旗叶GS活性和游离氨基酸含量均呈倒“V”型变化特征。各品种小麦旗叶GS活性、游离氨基酸含量大小及达到最大值的时期不一样, 砂土条件下峰值早于壤土10天左右出现, 且在5月22日已检测不到GS活性和游离氨基酸含量。花前和花后小麦地上部及各器官氮积累量(NA)、氮再分配量(NR)、成熟期籽粒产量和氮素当季利用率(NUE)均以壤土上为最高。氮素转运率(NRE)、花前再分配氮素对籽粒氮素的贡献率(NRC)、氮素生理效率(NPE)、氮收获指数(NHI)以砂土上为最高。其中, 砂土上NRC达82.46%-95.84%, 是花后的7倍左右; 壤土和黏土条件下花后吸收的氮素在籽粒氮素的积累中占有较大的比例, 贡献率分别为36.6%和29.2%。同一土壤质地上3个品种比较, 在砂土上, GS活性、游离氨基酸含量、籽粒产量、蛋白质含量及NUE和NPE以‘郑麦366’最高, 而壤土上以‘矮抗58’最高, 黏土上则以‘周麦22’最高。因此, 在生产上应培育和选择与土壤质地相适应的小麦品种, 砂土地种植‘郑麦366’, 壤土条件下种植‘矮抗58’, 黏土条件下种植‘周麦22’, 可以在获得较高产量和品质的同时, 提高氮素利用效率。     

Effect of soil texture and its organic content on the efficacy of Trichoderma harzianum (MIAU 145 C) in controlling Meloidogyne javanica and stimulating the growth of kidney beans

The efficiency of Trichoderma harzianum (MIAU 145 C) in promoting kidney bean (cv. Goli) growth in different soil texture (sandy loam, loam and clay loam) and organic matter content (0.5 and 2% of leaf litter) was assessed in a factorial experiment in the absence of Meloidogyne javanica. In another factorial experiment, the effect of soil texture, soil organic content and control measure (no control, 10?ml of T. harzianum containing 10⁶ spore ml^?1 and 2?mg ai cadusafos kg^?1 soil) was determined on nematode-infected kidney bean’s growth, fungus controlling activity and M. javanica reproduction. Except for the shoot length, the fungus improved plant growth. Clay loam was not a proper soil type for the cultivation of kidney bean plants (even in the soil without nematode), but the plant grew better in sandy loam and loam soil. The presence of leaf litter in the soil enhanced plant growth, increased fungal efficiency and increased nematode reproduction. It seems that T. harzianum can activate the plant defence system in sandy loam soil. T. harzianum was more effective in sandy loam or loam soil containing 2% organic matter (leaf litter) and reduced the reproduction factor of the nematode in the tested soil textures equally to the chemical nematicide treatment.     

Identification of the agents of coccidioidomycosis using polymerase chain reaction

Two pairs of primers for diagnosis of coccidioidomycosis using the method of PCR were constructed. One pair was used for identification of the two species of Coccidioides (C. immitis and C. posadasil) on the basis of MBP-1 gene. The other pair was chosen on the basis of SOWgp82 gene, which encodes an immunodominant, spherule outer wall glycoprotein for detecting only C. posadasii. The used primers allowed the agents of coccidioidomycosis to be detected using PCR with high sensitivity and specificity. The effective method of isolation of fungus DNA from soil contaminated with arthroconidia of Coccidioides spp. was developed. It includes guanidinthiocyanate-phenol-chloroform deproteinization followed by DNA purification using nuclear sorption.     

黄土高原不同土壤质地农田土壤碳、氮、磷及团聚体分布特征

结合野外观测和室内分析,研究了黄土高原不同土壤质地农田土壤碳、氮、磷含量及其生态计量学特征,以及土壤团聚体分布状况,以揭示土壤质地对区域农田土壤肥力的影响,以及土壤团聚体对肥力的调控作用.结果表明: 黄土高原农田土壤大团聚体含量、主要养分含量及其生态计量比值均随土壤质地由细变粗(壤质黏土→黏壤土→砂质壤土)逐渐降低;土壤pH值和微团聚体含量则呈现出相反的变化趋势. 随土壤黏粒含量增加,大团聚体含量、有机碳、全氮和全磷含量,以及C/P和N/P显著增加,土壤pH和微团聚体含量显著降低. 土壤有机碳、全氮和全磷含量,以及C/P和N/P随大团聚体含量的增加显著增加.表明区域尺度上农田土壤肥力状况取决于土壤质地,并受土壤大团聚体的调节.     

Effect of alginite amendment on microbial activity and soil water content in forest soils

The effect of the amendment with alginite, an organic rock originating from the biomass of fossilized unicellular algae, on microbial activity of forest soils was tested using a pot experiment. Five variants of soil-alginite mixtures were tested in three replicates with two forest soils: a loose sandy soil and a sandy loam. Gravimetric moisture closely correlated with the dose of alginite in both soils. Basal respiration and catalase activity increased with the dose of alginite in the sandy soil, but not in the sandy loam, where the highest response was observed at intermediate doses of alginite. The correlations of microbial activity parameters with moisture in the sandy soil were also much closer than in the sandy loam. The amendment with alginite was thus effective in improving some of the selected microbial activity indicators, but the optimum dose of alginite strongly depends on soil texture.     

Distribution of Catenaria anguillulae Sorokin,a facultative endoparasite of nematodes in soils from different locations of India

A survey of soils from 39 different locations from 12 states of India for the presence/absence of Catenaria anguillulae indicated a wide distribution of the fungus in Indian soils. Out of 490 soil samples, 451 yielded C. anguillulae. Further, it was also noted that the fungus is present throughout the year in soils from the different locations irrespective of soil types and crops grown. This is the first report of this kind on distribution of C. anguillulae from India.     

冲积平原区高程因子对土壤剖面质地构型的影响--以封丘县为例

河流冲积平原区土壤剖面质地构型对土壤水肥保持、供给能力以及水盐运动产生极为重要的影响。区域土壤的六大成土因素中,地形的影响最为突出。分析土壤剖面质地构型的地形影响,对于指导农业生产具有重要的理论与现实意义。本研究应用模糊c-均值算法模型,基于土壤剖面特征质地层厚度数据,得到研究区9种土壤剖面质地构型。对比分析典型区和研究区土壤剖面质地构型的地形影响结果表明：隶属于土壤剖面质地构型砂-砂-砂的隶属度值与高程之间始终存在正相关,说明地形较高部位发育的土壤质地偏砂的规律性始终存在,而从典型区到研究区,其它土壤剖面质地构型、0-60cm土层质地类型、以及表土层、心土层和底土层质地类型受地形影响的规律性减弱。地形较低部位发育的土壤剖面质地构型相对复杂,而地形较高处,发育的土壤剖面质地构型相对简单。土壤剖面质地构型复杂的地区可能更多地受到人为因素的干扰,从而表现出受地形影响的规律性不明显。     

Vertical distribution of maize roots in relation to permanent soil characteristics

The vertical distribution of maize roots was studied in four contrasting soils, (arenosols, luvisols, planosols and vertisols) by using in-situ root mapping on vertical planes. The relationship between root contact frequency and depth was different for each soil, with a relatively low field-to-field variability within each soil type. The general aspect of this relationship did not change appreciably for three years in arenosols, with a low colonization in sandy layers probably being due to mechanical barriers. The relationship was consistently non-monotonic in luvisols and planosols, because of the sparse colonization of sandy layers. In planosols, these layers were traversed by some primary roots, which were essentially clustered in animal burrows. The distribution of root contact frequency was closer to an exponential function in vertisols. In these soils rooting depth and colonization of deep soil layers showed a marked increase during two dry years compared with a wet year. This was probably due to a denser net of shrinkage cracks and slickensides, where roots were essentially located in dry years. These results raise the possibility of modelling the decrease in root distribution with depth using soil information and climatic characteristics.     

Nutrients and antinutrient constituents of Amaranthus caudatus L. Cultivated on different soils

This study investigated variations in the concentration of nutrients, antinutrients and mineral content of Amaranthus caudatus harvested from different soil types at various stages of maturity. Four out the five soils namely; sandy clay loam, silty clay loam, clayey loam and loam were experimentally formulated from primary particles of silt, clay and sand in line with the United State Department of Agriculture’s (USDA) soil triangle protocol. The unfractionated soil was used as the control. After harvesting at pre-flowering (61 days after planting), flowering (71 days after planting) and post-flowering (91 days after planting) stages, nutrient and antinutrient analyses were carried out following Association of Official Analytical Chemists (AOAC) and other referenced methods while the Inductively Coupled Plasma- Optical Emission Spectrometer was used to determine mineral compositions of the plant samples. The results of the study revealed that particle size and physicochemical properties of the soil influenced the number of minerals deposited in plant tissues. It was further observed that the nutritional properties of the plant change as plant ages. For an optimal yield of vitamins A and E, clayey loam proved to be the best soil particularly when A. caudatus is harvested before flowering but for vitamin C, sandy clayey loam yielded the highest output at the same stage. Similarly, clayey loam and loam soils yielded the highest proximate compositions at flowering and pre-flowering; however, mineral elements (micro and macro) were highest in control and loam soils.     

Herbivore trampling as an alternative pathway for explaining differences in nitrogen mineralization in moist grasslands

Studies addressing the role of large herbivores on nitrogen cycling in grasslands have suggested that the direction of effects depends on soil fertility. Via selection for high quality plant species and input of dung and urine, large herbivores have been shown to speed up nitrogen cycling in fertile grassland soils while slowing down nitrogen cycling in unfertile soils. However, recent studies show that large herbivores can reduce nitrogen mineralization in some temperate fertile soils, but not in others. To explain this, we hypothesize that large herbivores can reduce nitrogen mineralization in loamy or clay soils through soil compaction, but not in sandy soils. Especially under wet conditions, strong compaction in clay soils can lead to periods of soil anoxia, which reduces decomposition of soil organic matter and, hence, N mineralization. In this study, we use a long-term (37-year) field experiment on a salt marsh to investigate the hypothesis that the effect of large herbivores on nitrogen mineralization depends on soil texture. Our results confirm that the presence of large herbivores decreased nitrogen mineralization rate in a clay soil, but not in a sandy soil. By comparing a hand-mown treatment with a herbivore-grazed treatment, we show that these differences can be attributed to herbivore-induced changes in soil physical properties rather than to above-ground biomass removal. On clay soil, we find that large herbivores increase the soil water-filled porosity, induce more negative soil redox potentials, reduce soil macrofauna abundance, and reduce decomposition activity. On sandy soil, we observe no changes in these variables in response to grazing. We conclude that effects of large herbivores on nitrogen mineralization cannot be understood without taking soil texture, soil moisture, and feedbacks through soil macrofauna into account.     

Coloration changes of geologic media after addition of gasoline,diesel fuel,and ethylbenzene

The coloration changes of three soils (Amarillo sandy loam, Anthony sandy loam, and Oakville sandy loam) and two clays (kaolinite and montmorillonite) were monitored following the addition of four solvents (distilled water, unleaded gasoline, diesel fuel, and ethylbenzene) over a time period of 1 year. Soil and clay coloration was measured using Munsell color charts. In general, the Amarillo soil experienced the most extensive changes to a darker, grayer color. Initial color changes occurred in as little as 1 week, with subsequent changes occurring throughout the next 41 weeks. This study indicates that solvents can alter geologic media color and that the inferred chemical reduction processes can be an ongoing process.     

Persistence of Viruses in Desert Soils Amended with Anaerobically Digested Sewage Sludge

Pima County, Ariz., is currently investigating the potential benefits of land application of sewage sludge. To assess risks associated with the presence of pathogenic enteric viruses present in the sludge, laboratory studies were conducted to measure the inactivation rate (k = log₁₀ reduction per day) of poliovirus type 1 and bacteriophages MS2 and PRD-1 in two sludge-amended desert agricultural soils (Brazito Sandy Loam and Pima Clay Loam). Under constant moisture (approximately -0.05 × 10⁵ Pa for both soils) and temperatures of 15, 27, and 40°C, the main factors controlling the inactivation of these viruses were soil temperature and texture. As the temperature increased from 15 to 40°C, the inactivation rate increased significantly for poliovirus and MS2, whereas, for PRD-1, a significant increase in the inactivation rate was observed only at 40°C. Clay loam soils afforded more protection to all three viruses than sandy soils. At 15°C, the inactivation rate for MS2 ranged from 0.366 to 0.394 log₁₀ reduction per day in clay loam and sandy loam soils, respectively. At 27°C, this rate increased to 0.629 log₁₀ reduction per day in clay loam soil and to 0.652 in sandy loam soil. A similar trend was observed for poliovirus at 15°C (k = 0.064 log₁₀ reduction per day, clay loam; k = 0.095 log₁₀ reduction per day, sandy loam) and 27°C (k = 0.133 log₁₀ reduction per day, clay loam; k = 0.154 log₁₀ reduction per day, sandy loam). Neither MS2 nor poliovirus was recovered after 24 h at 40°C. No reduction of PRD-1 was observed after 28 days at 15°C and after 16 days at 27°C. At 40°C, the inactivation rates were 0.208 log₁₀ reduction per day in amended clay loam soil and 0.282 log₁₀ reduction per day in sandy loam soil. Evaporation to less than 5% soil moisture completely inactivated all three viruses within 7 days at 15°C, within 3 days at 27°C, and within 2 days at 40°C regardless of soil type. This suggests that a combination of high soil temperature and rapid loss of soil moisture will significantly reduce risks caused by viruses in sludge.     

A comparison of fine root distribution and water consumption of mature Caragana korshinkii Kom grown in two soils in a semiarid region, China

Water is a key limiting factor for vegetation restoration in the semi-arid areas of China. Caragana korshinkii Kom is a shrub that is widely planted in this region to control soil erosion and land desertification. The objective of this study was to investigate the fine root distribution of mature C. korshinkii and its water consumption, when grown in either silt loam or sandy soils, in order to understand differences between the water cycles of two such soils found in the transition zone between fertile loess hills and desert of the Northern Loess Plateau. Fine root distributions were measured using the trench-profile method. Soil water dynamics were monitored with a neutron probe during two growing seasons. The results showed that fine root area density (FRAD) declined with increasing soil depth in both soils, with 70.7% and 96.6% of the total fine roots being concentrated in the upper 1-m layer of the silt loam and sandy soils, respectively. Water consumption by C. korshinkii in the silt loam was close to that in the sandy soil. Most water consumption in both soil types was from the upper 1-m layer. Little variation in plant available water (PAW) occurred in the 3–6 m soil layer during the whole study period. However, in this layer, the PAW was significantly lower in the silt loam soil than in the sandy soil. Total actual evapotranspiration (ET_a) was slightly higher from the sandy soil plots than from those of the silt loam soil during both growing seasons. Our study indicated that mature C. korshinkii effectively uses about the same amount of water from either the silt loam or sandy soils, but that more soil water at depth was extracted from silt loam soil than from sandy soil.