Light Absorption and Competition in Mixed Communities of Hordeum Leporinum-Euphorbia Scordifolia

The effect of Euphorbia scordifolia and Hordeum leporinum competition on leaf area development, radiant energy absorption, and dry matter production was evaluated in a field experiment. Profile measurements (0-0.3, 0.3-0.6, 0.6-0.9, and >0.9 m above ground) of absorbed photosynthetically active radiation (APAR) and leaf area index (LAI) by species were taken at four densities of E. scordifolia (0, 1, 4, and 12 plants per m²). APAR calculated for H. leporinum in mixed communities was 79, 77, and 49 % of the APAR in H. leporinum and LAI was reduced to 81, 65, and 37 %. LAI of H. leporinum was concentrated in the 0.3-0.6 m layer, while the taller E. scordifolia plants had the greatest LAI above 0.6 m. By absorbing radiant energy in the upper canopy, E. scordifolia reduced APAR penetrating to H. leporinum. Measurements of net photosynthetic and transpiration rates, leaf temperature, and stomatal conductance confirmed the importance of competition for PAR for plant growth and metabolism. This revised version was published online in June 2006 with corrections to the Cover Date.     

Light induced transpiration in a chlorophyll deficient mutant of Hordeum vulgare

A chlorophyll deficient mutant of Hordeum vulgare L. was investigated with respect to its transpiration response to light pulses. Broad band blue light. 380–500 nm, caused a significant transpiration response, while broad band red light did not. The transpiration response to changes in the ambient CO₂-concentration was the same in the chlorophyll deficient mutant as in green plants. The absence of a transpiration response to red light in the mutant was therefore not the result of a defective CO₂-response. It is concluded that the specific blue light response is not mediated via photosynthetic CO₂-fixation. The nature of the blue light response is discussed.     

Ultra-sharp Plasmonic Super-cavity Resonance and Light Absorption

Plasmonics - Nano-structured metals have attracted a great amount of attention in recent years due to the exciting plasmonic and photonic properties. However, the intrinsic high loss of the metals...     

Regulation of Prenyl Chain Synthesis in Etiolated Hordeum Seedlings by Far-Red and White Light

The kinetics of prenyl chain formation (C₂₀ phytyl in chlorophylls, vitamin K_I and α-tocopherol; C₄₀ carotenoids and C₄₅ in plastoquinone-9) in plastids of etiolated Hordeum seedlings was compared in continuous darkness and after far-red and white light treatments:

• 1 Continuous far-red (via phytochrome Pfr) enhances the synthesis rate of all prenyl chains, but does practically not change the dark pattern of prenyl chain accumulation. Free C₂₀ phytyl chains could not be detected by means of thin layer chromatography.
• 2 White light induces a much stronger enhancement of prenyl chain formation than does far-red. It also changes the pattern of prenyl chain synthesis by a particularly strong promotion of the synthesis of phytyl chains, which get bound to chlorophyll a. The rate of chlorophyllide formation seems to determine the rate of enhanced phytyl formation.
• 3 It is assumed that the enzyme, which esterifies chlorophyllide a with the phytyl chain, is formed or activated by far-red treatment, but only starts working in white light, when the protochlorophyllide holochrome is re-arranged to the chlorophyllide holochrome.

     

蒙特卡罗模拟多束光辐照下生物组织中的光吸收分布

用蒙特卡罗方法模拟了均匀分布光和高斯分布光在生物组织内的传播。通过比较单束以及多束均匀分布光和高斯分布光照射下组织内的光子能量分布规律,分析了不同光源和光斑大小对光吸收分布的影响。结果表明:与均匀光束比较,高斯光束辐照时,激光能量较为集中,但侧向传播范围较窄。在总功率相同的情况下,使用单束大功率宽光源与多束功率较小的小光斑光源均能明显地增大光的侧向传播距离,但使用多束功率较小的小光斑光辐照时生物组织中的最大光吸收率增大。多束组合光源光束间距对光吸收分布影响很大。     

Quantifying the Likelihood of Co-existence for Communities with Asymmetric Competition

Trade-offs in performance of different ecological functions within a species are commonly offered as an explanation for co-existence in natural communities. Single trade-offs between competitive ability and other life history traits have been shown to support a large number of species, as a result of strong competitive asymmetry. We consider a single competition-fecundity trade-off in a homogeneous environment, and examine the effect of the form of asymmetry on the likelihood of species co-existing. We find conditions that allow co-existence of two species for a general competition function, and show that (1)?two species can only co-exist if the competition function is sufficiently steep when the species are similar; (2)?when competition is determined by a linear function, no more than two species can co-exist; (3)?when the competition between two individuals is determined by a discontinuous step function, this single trade-off can support an arbitrarily large number of species. Further, we show analytically that as the degree of asymmetry in competition increases, the probability of a given number of species co-existing also increases, but note that even in the most favourable conditions, large numbers of species co-existing along a single trade-off is highly unlikely. On this basis, we suggest it is unlikely that single trade-offs are able to support high levels of bio-diversity without interacting other processes.     

Monitoring Gene Expression in Mixed Microbial Communities by Using DNA Microarrays

A DNA microarray to monitor the expression of bacterial metabolic genes within mixed microbial communities was designed and tested. Total RNA was extracted from pure and mixed cultures containing the 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacterium Ralstonia eutropha JMP134, and the inducing agent 2,4-D. Induction of the 2,4-D catabolic genes present in this organism was readily detected 4, 7, and 24 h after the addition of 2,4-D. This strain was diluted into a constructed mixed microbial community derived from a laboratory scale sequencing batch reactor. Induction of two of five 2,4-D catabolic genes (tfdA and tfdC) from populations of JMP134 as low as 10⁵ cells/ml was clearly detected against a background of 10⁸ cells/ml. Induction of two others (tfdB and tfdE) was detected from populations of 10⁶ cells/ml in the same background; however, the last gene, tfdF, showed no significant induction due to high variability. In another experiment, the induction of resin acid degradative genes was statistically detectable in sludge-fed pulp mill effluent exposed to dehydroabietic acid in batch experiments. We conclude that microarrays will be useful tools for the detection of bacterial gene expression in wastewaters and other complex systems.     

用蒙特卡罗方法模拟光在多层组织中的吸收特性

在讨论目前新颖的组织功能成像打骂能性（例如光声成像）时,光子在组织中的吸收和散射特性是一个很重要的问题,鉴于这一点,本文利用一个多层模型研究了光子在皮肤,脂肪和肌肉组织中的吸收和散射特性,得到了在组织中某一深度处光子在一个平面上的吸收分布,以及在不同吸收系数和散射系数的情况下,光子的反射,吸收和透射几率,结果表明在经过多次散射后,大部分的光子被吸收,在本文的模型中只有7.3%的光子从表面反射（包括镜面反射和漫反射）,还讨论了不同光学参灵敏对参流分布的影响。     

Measurement of Light Absorption and Determination of the Specific Rate of Light Uptake in Cultures of Phototrophic Microorganisms

This article describes a novel method for the measurement of light absorption by cultures of phototrophic microorganisms. The rate of light absorption is calculated as the difference between the rate of light output from a culture containing cells and the rate of light output from a culture containing only growth medium. The specific rate of light uptake is calculated by dividing the rate of light absorption by the total biomass present in the culture. Application of the method to several case studies shows that light output from a culture varies widely depending on the absorption and scattering characteristics of the suspension.     

Light Limitation within Southern New Zealand Kelp Forest Communities

Light is the fundamental driver of primary productivity in the marine environment. Reduced light availability has the potential to alter the distribution, community composition, and productivity of key benthic primary producers, potentially reducing habitat and energy provision to coastal food webs. We compared the underwater light environment of macroalgal dominated shallow subtidal rocky reef habitats on a coastline modified by human activities with a coastline of forested catchments. Key metrics describing the availability of photosynthetically active radiation (PAR) were determined over 295 days and were related to macroalgal depth distribution, community composition, and standing biomass patterns, which were recorded seasonally. Light attenuation was more than twice as high in shallow subtidal zones along the modified coast. Macroalgal biomass was 2–5 times greater within forested sites, and even in shallow water (2m) a significant difference in biomass was observed. Long-term light dose provided the best explanation for differences in observed biomass between modified and forested coasts, with light availability over the study period differing by 60 and 90 mol photons m⁻² at 2 and 10 metres, respectively. Higher biomass on the forested coast was driven by the presence of larger individuals rather than species diversity or density. This study suggests that commonly used metrics such as species diversity and density are not as sensitive as direct measures of biomass when detecting the effects of light limitation within macroalgal communities.     

Enhanced Plasmonic Light Absorption for Silicon Schottky-Barrier Photodetectors

Quantum efficiency of the silicon Schottky-barrier photodetector is limited by the weak interaction between the photons and electrons in the metal. By engineering the metal surfaces, metallic groove structures are proposed to achieve strong light absorption in the metal, where most of the energy is transferred into hot carriers near the Schottky barrier. The proposed broadband photodetector with a bi-grating metallic structure on the silicon substrate enables to absorb 76 % of the infrared light in the metal with a 200-nm bandwidth, while staying insensitive to the incident angle. These results pave a new promising way to attain high quantum efficiency silicon Schottky-barrier photodetectors.     

Common Metal-Dielectric-Metal Nanocavities for Multispectral Narrowband Light Absorption

We present a method to theoretically achieve multispectral narrowband light absorption in common metal-dielectric-metal nanocavities. Polarization-independent and wide-angle multi-band light absorption with absorbance up to 99 % is achieved owing to the excitation of multiple localized plasmon cavity modes. Strong interactions between plasmon resonances and photonic modes are further introduced for achieving sharp absorption spectrum with sub-10-nm bandwidth via a high-index dielectric spacer with a thickness exceeding λ/2. These findings can offer new perspectives for multispectral nano-optics devices including perfect light absorbers and subtractive polychromatic filters.     

Scale, Experimental Design and the Detection of Ineterspecific Competition within Plant Communities

Abstract We report preliminary results of a series of experiments designed to explore the importance of interspecific competition within arable weed communities at different scales. Competition hierarchies were apparent from a pot experiment with different levels of nutrients and water. Two field experiments looked at Bromus sterilis, Galium aparine and Papaver rhoeas in winter wheat in the field, in a range of combinations and management treatments, and a fourth field experiment included a wider variety of species. There was little effect of fertilizer on population behaviour in the the field. Bromus increased around ten fold per year on minimum-tilled plots, regardless of other treatments. Galium increased on organically-fertilized and minimum-tilled plots, but only in the absence of Bromus. Papaver densities remained low, but again were depressed in the presence of high densities of Bromus . Taken together, the experiments demonstrate the existence of competition between weed species. However, as the design of the experiment increased to include greater levels of environmental variation, so competition became more difficult to detect, and less useful for interpreting the results than knowledge of the biology of the individual species. At the scale of interest to the farmer, the level of competition is not a good predictor for weed population dynamics.     

Revising the Role of Species Mobility in Maintaining Biodiversity in Communities with Cyclic Competition

One of the most crucial tasks faced by biologists today is revealing the mechanisms which account for biodiversity, yet we are still far from a full understanding of these mechanisms, and in particular the role of spatially heterogeneous population distributions. Recently, the spatially heterogeneous coexistence seen in cyclic competition models-in which species compete as in the game rock-paper-scissors-has brought them to the fore as a paradigm for biodiversity. Research into cyclic competition has so far been focused almost exclusively on stochastic lattice models with discrete space, which ignore several key dynamical aspects. In particular, such models usually assume that species disperse at the same speed. This paper aims to extend our understanding of cyclic competition by applying a reaction-diffusion Lotka-Volterra scheme to the problem, which allows us to vary the mobility of each species, and lets us take into account cyclic competition with more complex underlying mechanisms. In this paper we reveal an entirely new kind of cyclic competition-'conditional' cyclic competition, with a different underlying mechanism to 'classic' cyclic competition-and we show that biodiversity in communities with cyclic competition in fact depends heavily on the ratios between the species mobilities. Furthermore, we show that this dependence can be completely different for conditional and classic cyclic competition. We also present a wide range of spatiotemporal patterns which are formed in the system, including spiral and target waves, spiralling patches, and irregular chaotic patches. We show that the previously unknown case of conditional cyclic competition is host to a scenario of patchy co-invasion, where the spread of the population front takes place via the formation, splitting and propagation of patches of high species density. This is also an example of invasional meltdown because one competitor facilitates the invasion of the other, but unlike well-known cases of invasional meltdown the co-invaders in this system are not mutualists but antagonistic competitors, and the overall result mitigates, rather than amplifies, the damage done to the native ecosystem.     

Changes in Nitrogen-Fixing and Ammonia-Oxidizing Bacterial Communities in Soil of a Mixed Conifer Forest after Wildfire

This study was undertaken to examine the effects of forest fire on two important groups of N-cycling bacteria in soil, the nitrogen-fixing and ammonia-oxidizing bacteria. Sequence and terminal restriction fragment length polymorphism (T-RFLP) analysis of nifH and amoA PCR amplicons was performed on DNA samples from unburned, moderately burned, and severely burned soils of a mixed conifer forest. PCR results indicated that the soil biomass and proportion of nitrogen-fixing and ammonia-oxidizing species was less in soil from the fire-impacted sites than from the unburned sites. The number of dominant nifH sequence types was greater in fire-impacted soils, and nifH sequences that were most closely related to those from the spore-forming taxa Clostridium and Paenibacillus were more abundant in the burned soils. In T-RFLP patterns of the ammonia-oxidizing community, terminal restriction fragments (TRFs) representing amoA cluster 1, 2, or 4 Nitrosospira spp. were dominant (80 to 90%) in unburned soils, while TRFs representing amoA cluster 3A Nitrosospira spp. dominated (65 to 95%) in fire-impacted soils. The dominance of amoA cluster 3A Nitrosospira spp. sequence types was positively correlated with soil pH (5.6 to 7.5) and NH₃-N levels (0.002 to 0.976 ppm), both of which were higher in burned soils. The decreased microbial biomass and shift in nitrogen-fixing and ammonia-oxidizing communities were still evident in fire-impacted soils collected 14 months after the fire.