亚洲玉米螟幼虫体内酚氧化酶原激活蛋白酶cDNA片段的克隆与序列分析

为研究亚洲玉米螟Ostrinia furnacalis (Guenée)幼虫体内酚氧化酶原激活蛋白酶（prophenoloxidase activating proteinase, PAP）表达调控的分子机理, 本研究根据不同昆虫酚氧化酶原激活蛋白酶基因序列的保守区域, 设计合成简并引物, 采用RT-PCR技术从亚洲玉米螟5龄幼虫中扩增出PAP的一段cDNA片段, 大小为509 bp, 编码169个氨基酸, 预测分子量为18.7 kD, 理论等电点(pI值)为5.1。该基因序列中含有丝氨酸蛋白酶样结构域中保守的催化三联体, 不含发夹结构域。BlastP分析结果表明: 该片段的氨基酸序列与烟草天蛾Manduca sexta PAP-3和冈比亚按蚊Anopheles gambiae发夹型蛋白B1的氨基酸序列一致性最高, 为47%; 与烟草天蛾PAP-2、家蚕Bombyx mori PPAE、 斜纹夜蛾Spodoptera litura PPAE-3、 蓖麻蚕Samia cynthia ricini PAP和黑腹果蝇Drosophila melanogaster丝氨酸蛋白酶7的氨基酸序列的一致性分别为45%, 45%, 44%, 43%和41%。构建系统发育树, 对其进化关系进行了初步分析, 结果显示: 亚洲玉米螟PAP与烟草天蛾PAP-3和斜纹夜蛾PPAE-3的亲缘关系较近, 与黑腹果蝇丝氨酸蛋白酶7和冈比亚按蚊发夹型蛋白B1的亲缘关系较远。这些结果说明克隆得到的cDNA片段为亚洲玉米螟幼虫PAP基因靠近羧基端的部分序列。     

黄粉虫胰蛋白酶样酶基因TMTLSP全长cDNA的克隆和序列分析

以黄粉虫(Tenebrio molitor)幼虫全RNA逆转录得到的cDNA为模板,参照地鳖（Eupolyphaga sinensis）纤溶酶（fibrinolytic enzyme）简并引物,进行温度梯度PCR．以得到的扩增产物为基础,采用RACE得到基因全长cDNA,命名为黄粉虫胰蛋白酶样丝氨酸蛋白酶(Tenebrio molitor trypsin-like serine protease,TMTLSP)．TMTLSP全长869 bp(GenBank No. JN662461),开放阅读框为777 bp,编码258个氨基酸,并具有蛋白酶样特有的起始位点、活性中心预计底物结合位点．经过比对分析,该基因编码的氨基酸序列与赤拟谷盗、谷蠹、光亮扁角水虻、美洲大蠊等多种昆虫的胰蛋白酶或丝氨酸蛋白酶有较高的相似性．本研究将为胰蛋白酶样丝氨酸蛋白酶的提取及研究提供更为广泛的材料及研究依据．     

柑橘全爪螨热激蛋白基因PcHsp90的克隆及表达模式分析

【目的】研究热激蛋白基因Hsp90在柑橘全爪螨Panonychus citri生长发育及响应高温和低温胁迫方面的作用。【方法】采用RT-PCR和RACE技术克隆柑橘全爪螨Hsp90基因cDNA全长序列;利用生物信息学软件分析该基因的序列特性;运用荧光Real-time PCR技术,分析Hsp90基因mRNA在该螨各发育阶段、高温及低温胁迫条件下的表达模式。【结果】克隆鉴定出柑橘全爪螨一条Hsp90基因的c DNA全长序列,命名为PcHsp90(Gen Bank登录号:GQ495086),全长为2 763 bp,包含2 193 bp的开放阅读框,编码730个氨基酸,编码蛋白质的理论分子量和等电点分别为83.85kDa和4.99,氨基酸序列包括Hsp90家族的5个特征基序及细胞质型Hsp90的特征序列"MEEVD"。系统进化分析表明,PcHsp90与朱砂叶螨Tetranychus cinnabarinus的Hsp90首先聚为一支,然后再与肩突硬蜱Ixodes scapularis的Hsp90聚合,说明它们较近的亲缘关系。PcHsp90在柑橘全爪螨的各发育阶段均有所表达,其中在幼螨期表达量较低,且显著低于若螨和成螨期的表达水平(P=0.015)。0~10℃低温胁迫下,Pc Hsp90的mRNA相对表达量无显著变化(P=0.492);但在35~41℃高温胁迫下,Pc Hsp90的mRNA相对表达量随胁迫温度的升高而上调,尤其是当温度升高到41℃时,mRNA相对表达量达到对照(25℃)的6.75倍,且差异达显著水平(P=0.007)。【结论】柑橘全爪螨PcHsp90不仅对该螨的生长发育具有重要作用,而且是其响应高温胁迫的重要机制之一。     

棉铃虫酚氧化酶原基因的克隆、序列分析和组织表达

利用RT-PCR和RACE方法,获得了棉铃虫Helicoverpa armigera酚氧化酶原(prophenoloxidase,PPO)基因一个亚型cDNA的完整序列。该序列全长2 405 bp,含有一个2 097 bp的开放阅读框,编码一个由698个氨基酸残基组成的蛋白质。推导的氨基酸序列与其他鳞翅目昆虫PPO2基因相应氨基酸序列有较高的同源性(76％～80％),同时该序列具有铜离子结合位点等PPO基因所具有的典型特征。组织特异性表达分析表明,该基因在棉铃虫血细胞、体壁和中肠中均有表达。     

菜粉蝶丝氨酸蛋白酶基因Pr-SP1的克隆及其表达谱分析

昆虫主要依靠先天免疫反应来抵御外源异物的入侵, 而与血淋巴黑化及抗菌肽合成等过程密切相关的丝氨酸蛋白酶激活级联反应在其中起着重要作用。为阐明丝氨酸蛋白酶在菜粉蝶Pieris rapae免疫中的作用, 本文通过简并引物RT-PCR克隆获得了菜粉蝶丝氨酸蛋白酶家族基因Pr-SP1的cDNA片段, 并利用RACE法扩增获得其全序列。该cDNA序列长1 489 bp, 其中开放阅读框长1 059 bp, 共编码353个氨基酸残基。Pr-SP1含一长度为20个氨基酸残基的信号肽序列, 其蛋白理论分子量为36.85 kDa, 理论等电点为6.41。多序列比对结果表明, Pr-SP1与其他昆虫的同源蛋白基因序列上存在较高一致性, 在N端有一个发夹结构域, 而C端是一个具有催化活性的结构域。实时荧光定量RT-PCR及免疫印迹结果表明, 蛹期Pr-SP1主要在颗粒血细胞内进行转录, 其蛋白产物主要定位在血浆; Pr-SP1在不同虫态及虫龄都有转录, 其蛋白产物在不同虫态及虫龄都有表达, 其中5龄幼虫最高, 卵期最低; Pr-SP1的转录水平及其蛋白产物的表达水平均会被大肠杆菌Escherichia coli、 藤黄微球菌Micrococcus luteus和巴斯德毕赤酵母Pichia pastoris诱导。根据这些结果分析认为, Pr-SP1属于Spätzle蛋白酶前体激活酶, 并参与菜粉蝶的先天免疫反应。     

毛木耳漆酶基因的克隆、序列分析及其鉴定

本文利用PCR和RACE技术首次从毛木耳AP4菌株中获得编码漆酶基因的cDNA及其基因组全长序列,基因组大小为2514 bp.通过比较该漆酶基因的cDNA和基因组DNA的全长序列,发现该基因包含14个外显子和13个内含子.cDNA序列的全长为1972 bp,其包含一个完整的ORE长度为1860 bp,编码619氨基酸,推测的分子量大小为68 kD,等电点pI为5.15.在氨基酸序列的氨基末端存在一个信号肽序列,同时该基因还包括含铜氧化酶的三个功能结构域KOG1263、SufI和pfam00394.氨基酸序列与GenBank中登录的真菌漆酶蛋白序列比对表明:该氨基酸序列与其它真菌漆酶蛋白序列有较高的同源性,氨基酸序列相同性最高达41%,相似性为58%,并且含有真菌漆酶的四个保守的Cu-bind结构域.将获得的漆酶基因lacl与毕赤酵母表达载体pPIC9K连接,构建重组质粒pYH3660,将其转化到毕赤酵母中,经甲醇诱导该基因在第10天产酶高达123 IU/L,并通过Native SDS-PAGE电泳获得预期大小的漆酶蛋白条带.结构分析和功能验证均表明:本研究获得的基因lacl为漆酶基因.     

柑橘钙结合蛋白基因的克隆及其在果皮褐变中的表达分析

从柑橘果皮褐变相关基因的差减cDNA文库中,筛选了一个与钙结合蛋白基因家族同源的EST片段,通过RACE技术克隆了其全长cDNA序列(CsCAB,GenBank登录号EF010854).CsCAB基因全长984 bp,含有一个621 bp的开放阅读框,编码207个氨基酸,预测蛋白质分子量为22.95 kD,理论等电点为4.5;序列分析结果显示CsCAB与钙结合蛋白具有很高的同源性,且具有钙结合蛋白的保守结构域EF-hand.Northern blot结果显示CsCAB在褐变果皮中上调表达,说明该基因与柑橘果实的果皮褐变有密切关系.     

苜蓿夜蛾丝氨酸蛋白酶基因cDNA序列的克隆与原核表达研究

【目的】丝氨酸蛋白酶(Serine protease,SP)是以丝氨酸为活性中心的重要的蛋白水解酶。在昆虫中,丝氨酸蛋白酶参与消化、发育、先天免疫反应和组织重建等重要的生理过程。本试验以苜蓿夜蛾Heliothis viriplaca为材料,克隆其丝氨酸蛋白酶基因的cDNA序列,再对该基因进行原核表达并对表达产物进行活性测定研究。【方法】从苜蓿夜蛾中肠中提取总RNA,通过RT-PCR和RACE技术,扩增获得丝氨酸蛋白酶基因cDNA全长序列,用大肠杆菌E.coli表达系统进行表达;再对表达的重组蛋白进行变性、纯化与复性,并以BTEE为底物进行活性测定。【结果】克隆得到的苜蓿夜蛾中肠丝氨酸蛋白酶基因命名为Hv SP,该基因已登录Gen Bank,登录号为KT907053。该基因全长1 017 bp,开放阅读框为886 bp,编码295个氨基酸,分子量约为30.8 ku,等电点为8.27,推导的氨基酸序列与其他昆虫丝氨酸蛋白酶氨基酸序列相似性在46%~92%之间。在Tris-HCl缓冲液中,p H为8.5时,复性的重组蛋白活性最高,为28.7 U/m L。荧光定量PCR结果表明,Hv SP基因的m RNA在苜蓿夜蛾的多个组织中特异性表达,且在中肠中表达量最高,但在唾腺中未检测到Hv SP的m RNA表达。【结论】该研究克隆了一个新的苜蓿夜蛾丝氨酸蛋白酶基因的cDNA序列,且原核表达后的重组蛋白经过变性、纯化及复性后具有活性,为进一步探索丝氨酸蛋白酶在昆虫体内的生理生化功能奠定了基础。     

长毛明对虾酚氧化酶原基因cDNA克隆及组织表达分析

酚氧化酶(phenoloxidase,PO)属于对虾免疫系统的核心酶,在机体抵抗微生物感染过程中起到重要的作用。本研究利用RT-PCR和RACE技术克隆长毛明对虾(Fenneropenaeus penicillatus)酚氧化酶原(prophenoloxidase,proPO)基因(F-proPO)。cDNA全长3 003 bp,包含63 bp的5′-UTR、879 bp的3′-UTR和编码686个氨基酸的2 061 bp的开放阅读框(ORF),预测分子量为78.05 kD,理论等电点(pI)为5.79;含有3个串联式血蓝蛋白结构功能域、2个保守的Cu~(2+)结合位点和6个组氨酸残基;多重比对结果表明,F-proPO与中国明对虾proPO相似度最高(98%),与其他甲壳类动物proPO相似度为51%～93%。实时荧光定量PCR检测结果表明,该基因的表达具有组织特异性,在血淋巴中表达量最高。人工感染溶藻弧菌后,该基因在鳃、血淋巴、肠和性腺中表达水平显著上调;人工感染白斑综合征病毒后,该基因在脑、鳃、心、血淋巴和肠中表达水平显著上调。可见,长毛明对虾PO是参与机体免疫防御反应的一种重要分子。     

牛卵巢PRSS35基因CDS序列分析

为测定牛卵巢丝氨酸蛋白酶35 (PRSS35)的CDS序列并进行生物信息学分析。试验根据NCBI上已公布牛PRSS35基因的mRNA序列设计特异性引物,使用RT-PCR技术扩增牛卵泡中PRSS35的CDS序列。结果显示,牛PRSS35基因CDS区序列全长为1 239 bp,共编码412个氨基酸,PRSS35与其他10个物种的同源序列相似性较高,且该蛋白具有一个长度为20个氨基酸的信号肽,具有11个O-糖基化位点和2个N-糖基化位点,以及3个磷酸化位点,并发现有一个典型的Tryp_Spc结构域,即胰蛋白酶样丝氨酸蛋白酶结构域。为进一步研究该基因及其编码蛋白在卵泡发育过程中所起的作用提供了一定的理论依据。     

Crystal structure, detonation performance, and thermal stability of a new polynitro cage compound: 2, 4, 6, 8, 10, 12, 13, 14, 15-nonanitro-2, 4, 6, 8, 10, 12, 13, 14, 15-nonaazaheptacyclo [5.5.1.13, 11. 15, 9] pentadecane

A new polynitro cage compound 2, 4, 6, 8, 10, 12, 13, 14, 15-nonanitro-2, 4, 6, 8, 10, 12, 13, 14, 15-nonaazaheptcyclo [5.5.1.1(3,11).1(5,9)] pentadecane (NNNAHP) was designed in the present work. Its molecular structure was optimized at the B3LYP/6-31 G(d,p) level of density functional theory (DFT) and crystal structure was predicted using the Compass and Dreiding force fields and refined by DFT GGA-RPBE method. The obtained crystal structure of NNNAHP belongs to the P-1 space group and the lattice parameters are a = 9.99 ?, b = 10.78 ?, c = 9.99 ?, α = 90.01°, β = 120.01°, γ = 90.00°, and Z = 2, respectively. Based on the optimized crystal structure, the band gap, density of state, thermodynamic properties, infrared spectrum, strain energy, detonation characteristics, and thermal stability were predicted. Calculation results show that NNNAHP has detonation properties close to those of CL-20 and is a high energy density compound with moderate stability.     

Distribution of N,P, K,Ca, Mg,S, Zn,Fe, Mn and Cu in groundnut

Summary Concentration of N, P, K, Ca, Mg and S in summer groundnut crop was higher than in kharif while Zn, Fe, Mn and Cu contents were higher in summer crop. Kernel's N, P and Zn; Leaflet's Ca and Mn; Stem's K and Fe; Root's S and Cu and Petiole's Mg contents were highest. Shell's N, P, K, Mg, S, Zn and Cu; Kernel's Ca, Fe and Mn contents were the least. N, P, K, S, Zn and Cu concentrations decreased linearly as the crop grew. Ca, Mg, Fe and Mn concentrations did not display any distinct pattern. Ca concentration was positively correlated with pod yield in both the seasons.     

Simultaneous measurement of the trace elements Al, As, B, Be, Cd, Co, Cu, Fe, Li, Mn, Mo, Ni, Rb, Se, Sr, and Zn in human serum and their reference ranges by ICP-MS

The goal of this article was to establish reference ranges of the concentration of trace elements in human serum and to compare these results with those reported by other authors. We describe the sample preparation and measurement conditions that allow the rapid, precise, and accurate determination of Al, As, B, Be, Cd, Co, Cu, Fe, Li, Mn, Mo, Ni, Rb, Se, Sr, and Zn in human serum samples (n=110) by inductively coupled plasma-mass spectrometry (ICP-MS). Accuracy and precision were determined by analyzing three reconstituted reference serum samples by comparison with other methods and by the standard addition procedure. The advantages of the ICP-MS method include short time of analysis of the elements mentioned, low detection limit, high precision, and high accuracy. Disadventages include a high risk of contamination due to the presence of some of the elements of interest in the environment, the relatively delicate sample handling, and the high cost of the equipment.     

Reference values for the concentrations of As,Cd, Co,Cr, Cu,Fe, I,Hg, Mn,Mo, Ni,Pb, Se,and Zn in selected human tissues and body fluids

This report attempts to formulate reference ranges of elemental concentrations for 15 trace elements in selected human tissues and body fluids. A set of samples consisting of whole blood, blood serum, urine, milk, liver, and hair were chosen and considered for 15 elements of biological significance: As, Cd, Co, Cr, Cu, F, Fe, I, Hg, Mn, Mo, Ni, Pb, Se, and Zn. The results represent wholly or partially data received from 40 countries of the global regions of Africa, Asia, Europe, North, South, and Central America, Australia, and New Zealand. This survey, even if qualitative, has been useful in demonstrating certain trends of trace-element scenarios around the world. It is of course recognized that both diet and environment exert a strong influence on the distribution pattern of several elements, such as As, Cd, Mn, Pb, Se, and Zn. A limited comparison of the available information on soil status of different countries reflected some interesting associations for elements, such as Mn and Zn. Importantly, this study revealed that only a few countries were in a position to identify a reasonable amount of data on samples requested for this project. Regretably, for a number of countries, any dependable data for even such essential elements as Cu, Fe, and Zn were not available. In view of the nutritional importance of many elements, the time is ripe for concerted efforts by intergovernmental agencies to initiate investigations or commission task forces/projects to generate reliable reference data for selected global regions, which sadly lack data of any kind at present.     

Relations of the Al,B, Ba,Br, Ca,Cl, Cu,Fe, K,Li, Mg,Mn, Na,P, S,Si, Sr,and Zn mass fractions to morphometric parameters in pediatric and nonhyperplastic young adult prostate glands

The variation with age of the 18 trace element mass fractions and some histological characteristics of intact prostate glands of 50 subjects aged 0–30 years was investigated by instrumental neutron activation analysis, inductively coupled plasma atomic emission spectrometry, and a quantitative morphometric analysis. Mean values ± standard error of the mean (M ± SΕΜ) for the mass fractions (in milligrams per kilogram wet tissue) of these trace elements in pre-puberty were: Al 28.5 ± 9.0, B 0.40 ± 0.11, Ba 1.48 ± 0.44, Br 10.5 ± 1.5, Ca 241 ± 30, Cl 3,203 ± 278, Cu 3.51 ± 0.89, Fe 33.7 ± 4.1, K 2,364 ± 145, Li 0.020 ± 0.004, Mg 153 ± 23, Mn 0.46 ± 0.06, Na 2,286 ± 130, P 1,391 ± 100, S 1,698 ± 132, Si 62 ± 11, Sr 0.38 ± 0.08, and Zn 27.6 ± 2.3. During puberty and postpuberty, when there is a significant increase in circulating androgens, the mean values were: Al 7.2 ± 1.4, B 0.21 ± 0.05, Ba 0.25 ± 0.06, Br 5.8 ± 1.0, Ca 433 ± 81, Cl 2,314 ± 201, Cu 1.77 ± 0.13, Fe 20.9 ± 1.6, K 2,585 ± 118, Li 0.0088 ± 0.0014, Mg 232 ± 27, Mn 0.34 ± 0.04, Na 1,875 ± 107, P 1,403 ± 98, S 1,673 ± 73, Si 22.2 ± 3.1, Sr 0.22 ± 0.03, and Zn 93.3 ± 8.9. Mean values (M ± SΕΜ) of percent volumes (%) of the stroma, epithelium and lumen in the prostate before puberty were 73.4 ± 2.6, 20.4 ± 1.7, and 4.45 ± 0.94, respectively, versus 46.5 ± 2.5, 38.5 ± 1.9, and 14.9 ± 1.2 during puberty and postpuberty. This work’s results confirm that the Zn mass fraction in prostate tissue is an androgen-dependent parameter. For the first time it has been demonstrated that the glandular lumen is a main pool of Ca, Mg, and Zn accumulation and that the stroma is a main pool of Al, B, Ba, Br, Cl, Cu, Fe, Mn, Na, and Si accumulation in the normal human prostate, for the age range 0–30 years. It was concluded that the Ca, Mg, and Zn binds tightly within the prostatic fluid, because the volume of glandular lumen reflects the volume of prostatic fluid.     

The Effect of Age and Gender on Al, B, Ba, Ca, Cu, Fe, K, Li, Mg, Mn, Na, P, S, Sr, V, and Zn Contents in Rib Bone of Healthy Humans

The effect of age and gender on major, minor, and trace element contents in the intact rib bone of 80 relatively healthy 15–55-year-old women and men was investigated. Contents or upper limit of contents of 16 chemical elements in the rib bone were determined by inductively coupled plasma atomic emission spectrometry (ICP-AES). Mean values (M?±?SΕΜ) for the mass fraction of Ba, Ca, Cu, Fe, K, Li, Mg, Na, P, S, Sr, and Zn (milligram per kilogram of dry bone) were as follows: 2.54?±?0.16, 171,400?±?4,050, 1.35?±?0.22, 140?±?11, 1,874?±?71, 0.049?±?0.011, 2,139?±?38, 5,378?±?88, 75,140?±?1,660, 1,881?±?51, 291?±?20, and 92.8?±?1.5, respectively. The upper limits of contents of Al, B, Mn, and V were <7.20, <0.65, <0.36, and <0.03, respectively. Statistically significant tendency for the Ca, Mg, and P content to decrease with age was found in the human rib bone, regardless of gender. The mass fraction of Fe in the male rib bone increases with age. It was shown that higher Ca, Mg, Na, P, and Sr mass fractions as well as lower Fe content were typical of female ribs as compared to those in male ribs.     

Potential Compounds for Oral Cancer Treatment: Resveratrol,Nimbolide, Lovastatin,Bortezomib, Vorinostat,Berberine, Pterostilbene,Deguelin, Andrographolide,and Colchicine

Oral cancer is one of the main causes of cancer-related deaths in South-Asian countries. There are very limited treatment options available for oral cancer. Research endeavors focused on discovery and development of novel therapies for oral cancer, is necessary to control the ever rising oral cancer related mortalities. We mined the large pool of compounds from the publicly available compound databases, to identify potential therapeutic compounds for oral cancer. Over 84 million compounds were screened for the possible anti-cancer activity by custom build SVM classifier. The molecular targets of the predicted anti-cancer compounds were mined from reliable sources like experimental bioassays studies associated with the compound, and from protein-compound interaction databases. Therapeutic compounds from DrugBank, and a list of natural anti-cancer compounds derived from literature mining of published studies, were used for building partial least squares regression model. The regression model thus built, was used for the estimation of oral cancer specific weights based on the molecular targets. These weights were used to compute scores for screening the predicted anti-cancer compounds for their potential to treat oral cancer. The list of potential compounds was annotated with corresponding physicochemical properties, cancer specific bioactivity evidences, and literature evidences. In all, 288 compounds with the potential to treat oral cancer were identified in the current study. The majority of the compounds in this list are natural products, which are well-tolerated and have minimal side-effects compared to the synthetic counterparts. Some of the potential therapeutic compounds identified in the current study are resveratrol, nimbolide, lovastatin, bortezomib, vorinostat, berberine, pterostilbene, deguelin, andrographolide, and colchicine.