犬SLAM受体mRNA荧光定量PCR检测方法的建立和初步应用

目的建立荧光定量PCR方法,检测犬不同组织中SLAM受体mRNA的表达水平。方法以犬GAPDH为内参基因采用△△ct法,分析SLAM受体mRNA在犬体内不同组织中的表达。结果此方法有较高的重复性,变异系数在0．89％-2．35％。以SLAM受体在心脏的表达为1倍值,结果显示受体mRNA在脾脏中表达最高,为38．49倍;肺门淋巴结、肠系膜淋巴结、腹股沟淋巴结中表达次之,分别为9．13、8．58、6．24倍;膀胱中表达最低。结论成功建立了检测SLAM受体mRNA在不同组织中表达水平的荧光定量PCR检测方法。     

应用SYBR荧光实时定量RT-PCR法检测BMSCs诱导大鼠肝星状细胞中DR5mRNA表达

目的应用SYBR荧光实时定量RT-PCR法检测骨髓间充质干细胞（BMSCs）对大鼠肝星状细胞（HSCs）的死亡受体5（DR5）mRNA表达的影响,探讨BMSCs诱导HSCs凋亡及其机制。方法采用贴壁筛选法培养、纯化SD大鼠BMSCs,传至第4代使用;大鼠原代HSCs细胞及肝纤维原细胞系冻融后传代使用。应用6孔塑料培养板,建立上下双层细胞共培养体系,常规培养。实验分为3组：（1）实验组：BMSCs与HSCs共培养;（2）空白对照组：HSCs单独培养;（3）阴性对照组：大鼠肝纤维原细胞与HSCs共培养。以上培养体系动态观察24、48、72h,应用流式细胞仪检测HSCs细胞凋亡率,采用SYBRGreenI荧光实时定量RT-PCR法检测,以β-actin基因作为内参,计算各组DR5mRNA的相对表达量。结果在共培养组中,BMSCs促进了HSCs凋亡,与其他两组比较差异有显著统计学意义（P〈O．01）,空白对照组与阴性对照组比较无统计学意义（P〉0．05）。实验组BMSCs能明显上调HSCs中DR5mRNA的表达,与空白对照组和阴性对照组比较差异有显著统计学意义（P〈O．01）;空白对照组与阴性对照组DR5mRNA的表达比较无统计学意义（P〉O．05）。结论利用SYBR荧光实时定量RT-PCR法检测BMSCs诱导大鼠肝星状细胞中DR5mRNA表达,为进一步研究BMSCs通过死亡受体途径调控HSCs凋亡以及为BMSCs用于治疗肝纤维化的机制研究提供了理论基础。     

Transcriptional profiling of the early stages of germination in Candida albicans by real-time RT-PCR

By using real-time RT-PCR, we profiled the expression of CGR1, CaMSI3, EFG1, NRG1, and TUP1 in Candida albicans strains JCM9061 and CAI4 under several conditions, including induction of morphological transition, heat shock, and treatment with calcium inhibitors. Expression of CaMSI3 changed under these growth conditions except during heat shock. CGR1 expression increased during the early stages of hyphal growth in JCM9061, while expression was strain-dependent during heat shock. Both EFG1 and NRG1 were similarly expressed under hypha-inducing conditions and heat shock. Expression of TUP1 was slightly different from the expression of EFG1 or NRG1.     

Postnatal Development of Cholecystokinin-Like Immunoreactivity and Its mRNA Level in Rat Brain Regions

Developmental changes of preprocholecystokinin mRNA (CCK mRNA) and cholecystokinin-like immunoreactivity (CCK-LI) were examined in rat brain regions (frontal cortex, colliculi, hippocampus, striatum, and cerebellum) using RNA dot blot assays with cholecystokinin (CCK) cDNA and radioimmunoassay, respectively. The CCK-LI levels in all regions examined were very low at birth. Excluding the cerebellum, the levels in these regions increased postnatally and reached adult values at 28 days of age. In contrast to CCK-LI, CCK mRNA levels changed dramatically during development. A considerable amount of CCK mRNA was detected in the frontal cortex and hippocampus at birth. The changes in the level of CCK mRNA in the frontal cortex and colliculi paralleled those of CCK-LI, including a rapid increase from 7 to 14 days of age. The synthesis of CCK mRNA preceded the appearance of CCK-LI. CCK mRNA levels in the hippocampus and striatum exhibited a transient increase, with a peak at 14 days of age. In the adult brain, the CCK mRNA levels were high in the frontal cortex, moderate in the hippocampus and colliculi, and low in the striatum. The cerebellum contained only a negligible amount of CCK mRNA during development. The relatively high level of CCK-LI compared with the low level of CCK mRNA in the striatum supports the idea that most of the striatal CCK-LI is supplied from extrastriatal regions.(ABSTRACT TRUNCATED AT 250 WORDS)     

在发育性变化相关基因表达特性检测中内参基因的有效性和实时定量PCR解析方法的适用性

实时定量PCR技术(quantitative real-time PCR assay, rtQ-PCR)是一种快速检测核酸水平的方法.在多数相对定量法的运用过程中,会同时引入内参基因用以校正由于采样和操作误差所带来的样本之间核酸总量的差别.一个理想的内参基因的表达水平必须维持恒定或至少不受实际试验条件和机体发育变化的影响.由于作为候选内参基因的看家基因也可能会随着试验条件改变呈现出发育性变化和/或差异表达,故在相关研究中,内参基因的选择就成为试验的关键和难点.本研究采用rtQ-PCR技术,以鸭胚胎期和出雏早期肝脏中IGF-玉mRNA表达的发育性变化检测为例,探讨涉及发育性变化的基因表达解析过程中内参基因的选择,并评估绝对和相对定量两种解析方法的适用性.我们认为涉及发育性变化的基因表达解析过程中内参基因的选择时,采用2-△Ct法对内参基因的有效性进行的组间评价,比Genorm等方法对内参基因的有效性进行的整体评价更为科学;涉及发育性变化的基因表达解析过程中,如果难以找到一个理想的内参基因时,绝对rtQ-PCR解析方法将比随意选取一种内参基因作为内标的相对rtQ-PCR解析方法更为简单和适用,结果的解析也更为直观和可靠.     

Analysis of midgut gene expression profiles from different silkworm varieties after exposure to high temperature

The silkworm is a poikilothermic animal, whose growth and development is significantly influenced by environmental temperature. To identify genes and metabolic pathways involved in the heat-stress response, digital gene expression analysis was performed on the midgut of the thermotolerant silkworm variety ‘932’ and thermosensitive variety ‘HY’ after exposure to high temperature (932T and HYT). Deep sequencing yielded 6,211,484, 5,898,028, 5,870,395 and 6,088,303 reads for the 932, 932T, HY and HYT samples, respectively. The annotated genes associated with these tags numbered 4357, 4378, 4296 and 4658 for the 932, 932T, HY and HYT samples, respecti'vely. In the HY-vs-932, 932-vs-932T, and HY-vs-HYT comparisons, 561, 316 and 281 differentially expressed genes were identified, which could be assigned to 179, 140 and 123 biological pathways, respectively. It was found that some of the biological pathways, which included oxidative phosphorylation, related to glucose and lipid metabolism, are greatly affected by high temperature and may lead to a decrease in the ingestion of fresh mulberry. When subjected to an early period of continuous heat stress, HSP genes, such as HSP19.9, HSP23.7, HSP40-3, HSP70, HSP90 and HSP70 binding protein, are up-regulated but then reduced after 24 h and the thermotolerant ‘932’ strain has higher levels of mRNA of some HSPs, except HSP70, than the thermosensitive variety during continuous high temperature treatment. It is suggested that HSPs and the levels of their expression may play important roles in the resistance to high temperature stress among silkworm varieties. This study has generated important reference tools that can be used to further analyze the mechanisms that underlie thermotolerance differences among silkworm varieties.     

受孔雀石绿胁迫的近江牡蛎HSP90基因的表达变化

HSP90是重要抗逆分子,为了探讨近江牡蛎Crassostrea hongkongensis HSP90分子在抗逆中的作用,本研究建立实时荧光定量PCR方法,研究了在孔雀石绿胁迫下近江牡蛎HSP90基因在外套膜、消化腺、鳃、闭壳肌4种器官组织中的表达变化规律.结果显示,在浓度1μg/L的孔雀石绿处理下,4种器官组织中的...     

Combining qualitative and quantitative imaging evaluation for the assessment of genomic DNA integrity: The SPIDIA experience

In this note, we present an ad hoc procedure that combines qualitative (visual evaluation) and quantitative (ImageJ software) evaluations of Pulsed-Field Gel Electrophoresis (PFGE) images to assess the genomic DNA (gDNA) integrity of analyzed samples. This procedure could be suitable for the analysis of a large number of images by taking into consideration both the expertise of researchers and the objectiveness of the software. We applied this procedure on the first SPIDIA DNA External Quality Assessment (EQA) samples. Results show that the classification obtained by this ad hoc procedure allows a more accurate evaluation of gDNA integrity with respect to a single approach.