Heavy-metal-contaminated industrial soil: Uptake assessment in native plant species from Brazilian Cerrado

Plants of the Cerrado have shown some potential for restoration and/or phytoremediation projects due to their ability to grow in and tolerate acidic soils rich in metals. The aim of this study is to evaluate the tolerance and accumulation of metals (Cd, Cu, Pb, and Zn) in five native tree species of the Brazilian Cerrado (Copaifera langsdorffii, Eugenia dysenterica, Inga laurina, Cedrela fissilis, Handroanthus impetiginosus) subjected to three experiments with contaminated soils obtained from a zinc processing industry (S₁, S₂, S₃) and control soil (S₀). The experimental design was completely randomized (factorial 5 × 4 × 3) and conducted in a greenhouse environment during a 90-day experimentation time. The plant species behavior was assessed by visual symptoms of toxicity, tolerance index (TI), translocation factor (TF), and bioaccumulation factor (BF). C. fissilis has performed as a Zn accumulator by the higher BFs obtained in the experiments, equal to 3.72, 0.88, and 0.41 for S₁, S₂, and S₃ respectively. This species had some ability of uptake control as a defense mechanism in high stress conditions with the best behavior for phytoremediation and high tolerance to contamination. With economical and technical benefits, this study may support a preliminary analysis necessary for using native tree species in environmental projects.     

In vitro shoot and root organogenesis, plant regeneration and production of tropane alkaloids in some species of Schizanthus

A rapid in vitro propagation system leading to formation of shoots from callus, roots, and plantlets was developed for Schizanthus hookeri Gill. (Solanaceae), an endemic Chilean plant. The genus Schizanthus is of particular interest due to the presence of several tropane alkaloids. So far, in vitro propagation of species of this genus has not been reported. Propagation of S. hookeri consisted of two phases, the first one for callus initiation and shoot formation and the second for rhizogenesis and plantlet regeneration. From a single callus that rapidly increased in cell biomass (from approximately 50 mg to approximately 460 mg/culture tube [25 x 130 mm] in 60 days) in the presence of 2.69 microM NAA and 2.22 microM BA, more than 10 shoots/callus explant were formed. From the latter, approx. twenty plantlets formed after 90-110 days shoot subculture in medium devoid of growth regulators that favored root formation. Ten alkaloids ranging from simple pyrrolidine derivatives to tropane esters derived from angelic, tiglic, senecioic or methylmesaconic acids were obtained from in vitro regenerated plantlets. One of them, 3alpha-methylmesaconyloxytropane, was not previously described. The same growth conditions, as well as other growth regulator levels tested, were required to induce callus and root formation in S. grahamii Gill. Root organogenesis occurred despite a high level of BA vs. NAA used, (i.e., 4.44 microM BA and 0.54 microM NAA); however no shoot formation was achieved. In the case of S. tricolor Grau et Gronbach, only callus formation was obtained in the presence of various growth regulators.     

Nesting and acoustic ecology,but not phylogeny,influence passerine urban tolerance

Urbanization is one of the most extensive and ecologically significant changes happening to terrestrial environments, as it strongly affects the distribution of biodiversity. It is well established that native species richness is reduced in urban and suburban areas, but the species traits that predict tolerance to urbanization are yet little understood. In birds, one of the most studied groups in this respect, evidence is appearing that acoustic traits influence urban living, but it remains unknown how this compares to the effects of more obvious ecological traits that facilitate urban living. Therefore, it remains unclear whether acoustic communication is an important predictor of urban tolerance among species. Here, with a comparative study across 140 European and North American passerines, I show that high song frequency, which is less masked by the low‐frequency anthropogenic noise, is associated with urban tolerance, with an effect size over half that of the most important ecological trait studied: off‐ground nesting. Other nesting and foraging traits accepted to facilitate urban living did not differ for species occurring in urban environments. Thus, the contribution of acoustic traits for passerine urban tolerance approximates that of more obvious ecological traits. Nonetheless, effect sizes of the biological predictors of urban tolerance were low and the phylogenetic signal for urban tolerance was null, both of which suggest that factors other than phenotypic traits have major effects on urban tolerance. A simple possibility is exposure to urbanization, as there was a higher proportion of urban‐tolerant species in Europe, which is more urbanized than North America.     

Taxonomic re-evaluation of three related species of Graphium, based on morphology, ecology and phylogeny

Two fungi associated with bark beetles, Graphium pseudormiticum (described in 1994) and Rhexographium fimbriisporum (described in 1995), have two micromorphological characters in common. Both species produce conidia with conspicuous basal frills, and the conidia align in chains, despite being produced in slime. The association of G. pseudormiticum with the pine bark beetle, Orthotomicus erosus, and the association of R. fimbriisporum with the spruce bark beetle, Ips typographus, suggest ecological differences between the two fungal species. Analyses of micromorphology and phylogenetic analyses of aligned 18S and ITS sequences suggest that these two species are congeneric and should be classified in Graphium but that they represent distinct species. A collection of strains tentatively identified as Graphium spp., isolated from Ips typographus on Picea abies, Ips cembrae on Larix decidua and Tomicus minor on Pinus sylvestris in Austria share the same unusual basal conidial frills and conidial chains. Isolates from spruce were identified as G. fimbriisporum and those from pine as G. pseudormiticum. The strains from Ips cembrae on Larix decidua, distinguished by the reddish color of their colonies, microscopic structures and molecular characteristics, are described as the new species Graphium laricis sp. nov., and the close relationship of this species with the other two species is confirmed.     

Interactions between root and shoot competition vary among species

Understanding how the competition varies with productivity is essential for differentiating among alternative models of plant community organization. Prior attempts to explain shifts in root and shoot competition along gradients have generally assumed an additive interaction between the two competitive forms, using an experimental design which does not fully separate both above‐ and belowground processes. At the most basic level, few field studies have separated root and shoot competition, and we have limited knowledge about both the relative importance of these processes, and how they interact to affect plant growth in the field. Presented here are findings from a field study in which root and shoot competition were experimentally separated by using root exclusion tubes and neighbor tiebacks in an early successional community. Individuals of four species (Abutilon theophrasti, Amaranthus retroflexus, Rumex crispus, and Plantago lanceolata) were grown at two levels of fertilization with full competition, aboveground competition only, belowground competition only, or neither above‐ nor belowground competition. Competition was measured as competitive response, which is the natural log of the relative biomass of a target plant grown with competition compared to growth without competition. In contrast to predictions from current models of productivity‐competition relationships, but in agreement with other experimental studies, there was no change in the strengths or root, shoot, or total competition with a modest increase in productivity. Despite no effect of fertilization on the strength of competition, the form of interaction between root and shoot competition varied both as a function of species identity and fertilization. For both of the rosette forming species, the combined effects of root and shoot competition were less than predicted assuming no interaction (a “negative interaction”), with one species switching from a negative to an additive interaction with fertilization. The fact that fertilization caused a shift in the root‐shoot interaction, but not in the total strength of root and shoot competition, suggests that the root‐shoot interaction is itself a highly labile variable. If root‐shoot interactions are common in natural systems, then simply measuring the strength of one form of competition in no way provides any information about the overall importance of that competitive form to plant growth.     

Melding ecology, classical weed biocontrol, and plant microbial ecology can inform improved practices in controlling invasive plant species

Early research leading to the successful biological control of invasive species such as Opuntia spp., and Hypericum perforatum set examples and provided data useful for research programs that would follow. However, this early work failed to become established as a source of applicable principles for later workers in weed biocontrol. Recently, retrospective and parallel studies have been suggested as a means to reengage with earlier work to derive useful ideas and data to enhance future programs in weed biocontrol. Parallel studies by workers in plant community ecology on the nature of feedback elicited by plant species in their invaded and native range have shown the importance of soil microbial communities in effecting feedback. Retrospective reexamination of previous studies would likely provide clues to other insect–plant pathogen interactions in addition to those described by the author and others. The effects of invasive species in profoundly altering soil microbial communities point to the need for further studies on key microbial species contributing to or driving the impact of biocontrol. These collective data suggest that the desired goal of selecting for and utilizing stronger biocontrol agents to reduce nontarget effects and to increase the impact of biological control programs would be best served by prerelease studies that assess the propensity of a candidate agent for direct or indirect interaction with other agents. This could be assessed through the use of survival analysis. Overall, parallel empirical and retrospective studies should be a necessary part of how biological control is practiced.     

Melding ecology,classical weed biocontrol,and plant microbial ecology can inform improved practices in controlling invasive plant species

Early research leading to the successful biological control of invasive species such as Opuntia spp., and Hypericum perforatum set examples and provided data useful for research programs that would follow. However, this early work failed to become established as a source of applicable principles for later workers in weed biocontrol. Recently, retrospective and parallel studies have been suggested as a means to reengage with earlier work to derive useful ideas and data to enhance future programs in weed biocontrol. Parallel studies by workers in plant community ecology on the nature of feedback elicited by plant species in their invaded and native range have shown the importance of soil microbial communities in effecting feedback. Retrospective reexamination of previous studies would likely provide clues to other insect–plant pathogen interactions in addition to those described by the author and others. The effects of invasive species in profoundly altering soil microbial communities point to the need for further studies on key microbial species contributing to or driving the impact of biocontrol. These collective data suggest that the desired goal of selecting for and utilizing stronger biocontrol agents to reduce nontarget effects and to increase the impact of biological control programs would be best served by prerelease studies that assess the propensity of a candidate agent for direct or indirect interaction with other agents. This could be assessed through the use of survival analysis. Overall, parallel empirical and retrospective studies should be a necessary part of how biological control is practiced.     

Periphyton density is similar on native and non‐native plant species

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Northern species of earth tongue genus Thuemenidium revisited, considering morphology, ecology and molecular phylogeny

Thuemenidium is a small earth tongue genus with three recognized white-spored species. Within Thuemenidium, T. atropurpureum and T. arenarium have been reported only from the northern hemisphere while T. berteroi is known solely in the southern hemisphere. We reviewed the ecology, examined the morphology and inferred the systematic positions of northern species of Thuemenidium from LSU-rDNA gene phylogeny of 48 taxa in Pezizomycotina including recent collections. Our results suggest that Thuemenidium in its current sense is polyphyletic and that T. atropurpureum, closely related to Microglossum and Leotia species, is a member of Leotiaceae (Helotiales, Leotiomycetes). Our phylogeny placed the other northern species, T. arenarium, in Geoglossaceae (Geoglossales, Geoglossomycetes), retaining genus Thuemenidium, pending further investigation.     

Effects of irrigation frequency on germination and on root and shoot yields ofAcacia species

Summary Maximum germination response and root + shoot yields of Acacias were obtained at daily irrigation. Any deviation from daily irrigation resulted in variations of performance (germination and growth yield) between the six Acacia species studied. Species of relatively dry habitse.g. A. nubica andA. seyal were more sensitive to water supply compared with those of relatively wet habitatse.g. A. nilotica andA. albida. This was reflected at the establishment phase by the greater production of root + shoot yields of species of drier zones than by those of wetter ones. It is concluded that variations in water supply may account for species adaptation and distribution in semi-arid zones.     

Microcutting leaf area,weight and position on the stock shoot influence root vigour,shoot growth and incidence of shoot tip necrosis in grape plantlets in vitro

The physiological parameters of microcuttings, namely leaf area, weight (wt) and position on the stock shoot, had significant effects on root vigour, microshoot growth and incidence of shoot tip necrosis (STN) in cultures of grape (Vitis vinifera L.) ‘Arka Neelamani’. Single-node leafy cuttings cultured in MS medium containing 1 μM IAA and 0.1 μM GA₃ generally rooted first and subsequently sprouted into a single shoot. Small leafed cuttings exhibited slow root emergence, poor quality roots, early sprouting and weak shoot growth. Large leafed cuttings on the other hand, showed early rooting, vigorous roots, delayed sprouting and healthier shoots. Significant correlations were observed between fresh root wt per plantlet at 1 month in culture and wt of lamina, total wt and leaf area of the cuttings in that order. A significant correlation also existed between wt of roots and height or wt of the sprout that developed. The study suggests that the weight or area of the leaf governed the root growth in a microcutting. STN was observed in some plantlets particularly those derived from large leafed cuttings. Such cuttings showed vigorous roots and delayed but fast sprout growth that ended in STN. Plantlets showing STN had less Ca⁺⁺ and Mg⁺⁺ in the shoot tissue than in the shoots of normal plantlets while the roots showed similar Ca⁺⁺ or higher Mg⁺⁺ contents. Both had comparable amounts of cytokinins in shoot and root tissues. This revised version was published online in June 2006 with corrections to the Cover Date.     

Pollination ecology of a plant in its native and introduced areas

Entomophilous and obligate out-crossing non-native plants need to become well integrated in the resident plant–pollinator network to set seeds and become established. However, it is largely unknown how pollination patterns differ between native ranges and those where plants have been introduced.We compared the identity, abundance and visitation rates of pollinators, insect pollen loads, pollen deposition on stigmas, and fruit and seed sets of Hedysarum coronarium, an entomophilous short lived N-fixing perennial, in populations from native and introduced ranges in Spain (South of mainland Spain and Menorca Island, respectively).In both areas, Hedysarum was visited by a similar number of species, mainly hymenopterans; seven species were common between native and introduced areas. However, pollinator richness, abundance, and visits per flower were greater in the native than in the introduced range, as were fruit and seed sets. Hedysarum pollen loads on stigmas and on Apis mellifera, the most common pollinator, did not differ between areas. Lower abundance of pollinators might be causing lower visitation rates, and to some extent reducing Hedysarum fruit and seed sets in the introduced area.Our biogeographical approach shows that integration of a non-native plant in a resident pollinator network does not prevent pollen limitation in the introduced area. Therefore, despite being necessary, pollination mutualistic relationships might not be the key for non-native plant establishment success in the introduced area.     

Taxonomy, phylogeny, and ecology of the heliobacteria

Heliobacteria are a recently discovered group of anoxygenic phototrophic bacteria, first described in 1983. Heliobacteria contain bacteriochlorophyll g, a pigment unique to species of this group, and synthesize the simplest photosynthetic complexes of all known phototrophs. Also, unlike all other phototrophs, heliobacteria lack a mechanism for autotrophy and produce endospores. Four genera of heliobacteria containing a total of 10 species are known. Species of the genera Heliobacterium, Heliobacillus, and Heliophilum grow best at neutral pH, whereas species of Heliorestis are alkaliphilic. Heliobacterium, Heliobacillus, and Heliophilum species form one phylogenetic clade of heliobacteria, while Heliorestis species form a second within the phylum Firmicutes of the domain Bacteria. Heliobacteria have a unique ecology, being primarily terrestrial rather than aquatic phototrophs, and may have evolved a mutualistic relationship with plants, in particular, rice plants. The genome sequence of the thermophile Heliobacterium modesticaldum supports the hypothesis that heliobacteria are “minimalist phototrophs” and that they may have played a key role in the evolution of phototrophic bacteria.     

Organic fertilizer applications influence on the shoot and root biomass production and plant nutrient of Calopogonium mucunoides from crude oil-contaminated soils

The impact of crude oil-contaminated soil on the shoot and root biomass yield and nutrients uptake of Calopogonium mucunoides Desv. using two types of composted manure (COM) as soil amendments were investigated. This was with a view to assessing the growth response of the test plant under different levels of crude oil soil contamination. Five levels [0, 2.5, 5, 10, and 20% (v/v)] of crude oil, each was replicated thrice to contaminate 3 kg of soil when 12 g pot^?1 COM; 12 g pot^?1 neem-fortified composted manure (NCM) and control, soil without manure application (C) were imposed as manure treatments. The mean fresh shoot biomass yield at zero crude oil soil contamination and with COM application was 2.67 g pot^?1. This value was significantly (p < 0.05) higher than 2.05 g pot^?1 for NCM and 1.67 g pot^?1 for the control. Also, the mean fresh root yield at zero crude oil soil contamination with COM application was 4.02 g pot^?1. This value was significantly (p < 0.05) higher than 2.41 g pot^?1 for NCM and 1.71 g pot^?1 for the control. The dry shoot and root biomass yield followed similar pattern. The shoot and root yield of C. mucunoides significantly (p < 0.05) reduced with increase in crude oil soil contamination. The nutrients uptake of C. mucunoides, particularly N, P, Ca, Mg, and Fe, were enhanced with COM fertilization having higher available P, K, and Na values; and by implication, suggesting the importance of adequately formulated composted manure usage in the rehabilitation studies of crude oil-contaminated soil.     

Dependency on arbuscular mycorrhizal fungi and responsiveness of some Brazilian native woody species

Arbuscular mycorrhiza (AM) associations are of great importance in forest ecology and land rehabilitation in the tropics, but information on AM susceptibility, host dependence, and host responsiveness to the fungi is scarce. The present study was carried out under greenhouse conditions in a low-fertility soil with 29 woody species. There were very large differences between plant species in AM colonization, responsiveness to inoculation, mycorrhizal dependency and efficiency of phosphorus (P) uptake. All of these parameters were influenced by available soil P in solution. AM colonization ranged from zero in several non-mycotrophic species to >60% in the highly mycotrophic ones. Ten species (34% of the total) were found to be mycorrhiza-independent or non-mycotrophic, whereas the rest were highly to very highly dependent. The level of P above which there was no AM effect, defined here as the T' value, allowed distinction between AM dependence and responsiveness of the host and was very efficient for separating species according to these traits. Mycorrhizal responsiveness and dependency were not related and some species were responsive to increased P in the soil solution only when mycorrhizal. Efficiency of P uptake was affected by AM and by P levels. Some species exhibited a high efficiency independent of AM, while others were very inefficient even at high P. Despite differences between species, in most cases AM growth enhancement was nutritionally mediated. Differences in AM responsiveness and dependency as well as the importance of these concepts for reforestation technology in the tropics are discussed.     

Acclimation-induced changes in cell membrane composition and influence on cryotolerance of in vitro shoots of native plant species

Cell membranes are the primary sites of cryopreservation injury and measuring changes to membrane composition arising from cold acclimation may assist with providing a rationale for optimising cryopreservation methods. Shoot tips from two south-west Western Australian species, Grevillea scapigera and Loxocarya cinerea, and Arabidopsis thaliana (reference species) were subjected to cryopreservation using the droplet vitrification protocol. Two pre-conditioning regimes involving a constant temperature (23 °C, CT with a 12 h light/dark cycle) or an alternating temperature (AT) regime (20/10 °C with a 12 h light/dark cycle) were compared. Soluble sugars, sterols and phospholipids present in the shoot tips were analysed. Use of AT pre-conditioning (acclimation) resulted in a modest decrease in cryotolerance in A. thaliana, increased cryotolerance in G. scapigera, and increased survival in the non-frozen control explants of L. cinerea in comparison to CT pre-conditioning. Increased cryotolerance was accompanied by a higher total sugar sterol and phospholipid content, as well as an increase in strong hydrating phospholipid classes such as phosphatidylcholine. The double bond index of bound fatty acyl chains of phospholipids was greater after AT pre-conditioning, mostly due to a higher amount of monoenes in A. thaliana and trienes in G. scapigera and L. cinerea. These findings suggest that AT pre-conditioning treatments for in vitro plants can have a positive influence on cryotolerance for some plant species and this may be related to observed changes in the overall composition of cell membranes. However, alternative factors (e.g. oxidative stress) may be equally important with other species (e.g. L. cinerea).     

No universal scale-dependent impacts of invasive species on native plant species richness

A growing number of studies seeking generalizations about the impact of plant invasions compare heavily invaded sites to uninvaded sites. But does this approach warrant any generalizations? Using two large datasets from forests, grasslands and desert ecosystems across the conterminous United States, we show that (i) a continuum of invasion impacts exists in many biomes and (ii) many possible species–area relationships may emerge reflecting a wide range of patterns of co-occurrence of native and alien plant species. Our results contradict a smaller recent study by Powell et al. 2013 (Science 339, 316–318. (doi:10.1126/science.1226817)), who compared heavily invaded and uninvaded sites in three biomes and concluded that plant communities invaded by non-native plant species generally have lower local richness (intercepts of log species richness–log area regression lines) but steeper species accumulation with increasing area (slopes of the regression lines) than do uninvaded communities. We conclude that the impacts of plant invasions on plant species richness are not universal.     

Taxonomic affinities of dark septate root endophytes of Colobanthus quitensis and Deschampsia antarctica,the two native Antarctic vascular plant species

Although dark septate fungal endophytes (DSE) occur widely in association with plant roots in cold-stressed habitats, little is known of the taxonomic status of DSE in Antarctica. Here we investigate the phylogenetic affinities of DSE colonising the roots of Colobanthus quitensis and Deschampsia antarctica, the two maritime Antarctic vascular plant species. Two hundred and forty-three DSE were isolated from roots collected from 17 sites across a 1 470 km transect through maritime and sub-Antarctica. The ITS1-5.8S-ITS2 nuclear ribosomal gene cluster of representative isolates was sequenced, and the sequences were recovered in 10 sequence groups and sub-groups. Nine of the sequence groupings could be placed in the Helotiales and the remaining one showed high homology to a large number of currently unassigned anamorphic ascomycete sequences. Of the Helotiales, Leptodontidium orchidicola, Rhizoscyphus ericae and species of Tapesia and Mollisia could be confidently identified. This study demonstrates that members of the Helotiales, including several widely-recognised DSE genera, commonly colonise the roots of C. quitensis and D. antarctica in the Antarctic.     

Snake phylogeny based on osteology,soft anatomy and ecology

Relationships between the major lineages of snakes are assessed based on a phylogenetic analysis of the most extensive phenotypic data set to date (212 osteological, 48 soft anatomical, and three ecological characters). The marine, limbed Cretaceous snakes Pachyrhachis and Haasiophis emerge as the most primitive snakes: characters proposed to unite them with advanced snakes (macrostomatans) are based on unlikely interpretations of contentious elements or are highly variable within snakes. Other basal snakes include madtsoiids and Dinilysia--both large, presumably non-burrowing forms. The inferred relationships within extant snakes are broadly similar to currently accepted views, with scolecophidians (blindsnakes) being the most basal living forms, followed by anilioids (pipesnakes), booids and booid-like groups, acrochordids (filesnakes), and finally colubroids. Important new conclusions include strong support for the monophyly of large constricting snakes (erycines, boines. pythonines), and moderate support for the non-monophyly of the trophidophiids' (dwarf boas). These phylogenetic results are obtained whether varanoid lizards, or amphisbaenians and dibamids, are assumed to be the nearest relatives (outgroups) of snakes, and whether multistate characters are treated as ordered or unordered. Identification of large marine forms, and large surface-active terrestrial forms, as the most primitive snakes contradicts with the widespread view that snakes arose via minute, burrowing ancestors. Furthermore, these basal fossil snakes all have long flexible jaw elements adapted for ingesting large prey ('macrostomy'), suggesting that large gape was primitive for snakes and secondarily reduced in the most basal living foms (scolecophidians and anilioids) in connection with burrowing. This challenges the widespread view that snake evolution has involved progressive, directional elaboration of the jaw apparatus to feed on larger prey.