Relative rates of shell dissolution and net sediment accumulation - a commentary: can shell beds form by the gradual accumulation of biogenic debris on the sea floor?

Rates of shell production rarely exceed 500 g CaCO₃.m^-2yr^-1 in clastic sediments. Loss of shell carbonate by dissolution greatly exceeds loss by bioerosion and abrasion in most habitats. Rates of shell dissolution in modern sediments, estimated from rates of organic carbon degradation or measured directly, usually exceed 1000 g CaCo₃.M^-2yr^-1. This taphonomic loss is concentrated at or just below the sediment-water interface in the taphonomically-active zone (TAZ). Consequently, except where rates of shell production are very high or rates of organic carbon degradation very low, shells cannot permanently accumulate on the sea floor. Preservation requires rapid burial, usually by physical 'event' processes, to slow down taphonomic loss. Only near the base of the TAZ does the long-term sedimentation rate become an effective mediator of shell preservation as sediment accumulation gradually removes buried shell material from the taphonomically-active zone.     

Fouling deterrence on the bivalve shell Mytilus galloprovincialis: a physical phenomenon?

The physical nature of fouling deterrence by the mussel Mytilus galloprovincialis was investigated using high-resolution biomimics of the bivalve surface. The homogeneous microtextured surface of M. galloprovincialis (1.94 +/- 0.03 microm), the smooth surface of the bivalve Amusium balloti (0 microm), and moulds of these surfaces (biomimics) were compared with controls of smooth (0 microm) and sanded moulds, (55.4 +/- 2.7 microm) and PVC strips (0 microm) in a 12-week field trial. The shell and mould of M. galloprovincialis were fouled by significantly fewer species and had significantly less total fouling cover than the shell and mould of A. balloti over a 12-week period. However, the major effects were between surfaces with and without microtopography. Surface microtopography, be it structured as in the case of M. galloprovincialis shell and mould, or random as in the case of the sanded mould, had a lower cover of fouling organisms than treatments without microtopography after 6 weeks. There was also no difference between the effect of the M. galloprovincialis mould and the sanded mould. The strong fouling deterrent effects of both these surfaces diminished rapidly after 6 to 8 weeks while that of M. galloprovincialis shell remained intact for the duration of the experiment suggesting factors in addition to surface microtopography contribute to fouling deterrence.     

Molecular dynamics simulation of the melting processes of core–shell and pure nanoparticles

Core–shell nanoparticles are nanosized particles that consist of a core and a shell, constructed from different metallic elements. Core–shell nanoparticles have received extensive attention, owing to their various potential applications such as paints, optical films and catalysts. Herein, we investigate the melting behaviours of different core–shell nanoparticles under continuous heating using molecular dynamics simulation. Different metallic elements were examined as core–shell and pure nanoparticles. Five different processes were observed during the melting of core–shell nanoparticles. In contrast, only one process was identified during the melting of pure nanoparticles. These processes were influenced by the nanoparticle size, shell thickness and differences between the lattice constants and melting point temperatures of the metallic elements. Our simulation provides microscopic insights into the melting behaviours of existing and proposed core–shell nanoparticles that would be highly beneficial towards the fabrication of materials with different chemical coatings.     

Antipredatory traits of the ammonoid shell — Indications from Jurassic ammonoids with sublethal injuries

More than 1500 Jurassic ammonoids with sublethal injuries from the H.Keupp collection (Berlin) were examined. They came from the Toarcian of Southern France, Southern Germany and England, from the Callovian of Villers-sur-Mer (Normandy, France) and from the Oxfordian of Sacaraha (Madagascar). Most sublethal injuries observed can not be referred to specific predators but display the intrinsic factors like tolerance against irritations and disturbances caused by predatory attacks. The types of shell breakages are strongly dependent on shell shape and specific sculpture. Some of the observed types occur exclusively in specific morphotypes. Average range of observed injuries is highest in weakly ornamented shells and lowest in highly ornamented shells. Maximum observed aboral range of shell breakages occurred in longidomes, the lowest in brevidomes and mesodomes. Shell form, sculpture and the length of the living chamber influence susceptibility to lethal injuries, confirmed by the frequency of multiple injuries, which is apparently a good proxy of the vulnerability towards shell crushing predators. The antipredatory traits were in an adaptational conflict with traits demanded for high manoeuvrability and streamlining.      

Scute’s polymorphism as a source of evolutionary development of the turtle shell

The scute mosaic (pholidosis) of the turtle shell is a complex correlated system of the modular type. Horny scutes are separate morphological elements partially closely connected with each other and partially relatively autonomous in development. The last feature causes high variability of scutes in the shape, size, rate and direction of growth, and provides the basis of transformation of the entire mosaic. In the evolution of turtles, the horny shell changed towards a decrease in the number of elements composing it. The process of oligomerization developed through reduction and fusion of scutes or their anlages. The traces of these transformations are observed in the ontogeny of living turtles. The scutes undergoing reduction display the following developmental deviations: (1) a decrease in size of the scute anlage, (2) the temporal shift in initiation to later embryonic stages, (3) absence of an anlage of a own furrow (the boundaries of the scute are formed by the furrows of neighboring scutes), and (4) a decrease in size of the zone and rate of the scute growth. The fusion of horny scutes follows two patterns: (1) fusion of scute anlages and (2) reduction of horny furrows separating scutes before. Secondary polymerization of the scute mosaic by the appearance of additional elements usually results from abnormal development and is infrequently fixed in evolution. The main mechanism of evolutionary changes in turtle pholidosis was heterochrony, i.e., the time shift in initiation and developmental rate of scutes. The heterotopies, i.e., changes in the position of scute anlages, played a minor role in the evolution of turtles; they usually caused only scute abnormalities, which was frequently asymmetrical.     

Negotiation or aggression during shell fights of the hermit crab Pagurus bernhardus?

Shell fighting behaviour of the hermit crab Pagurus bernhardus was investigated. Analysis of fights between crabs in which there was little or no asymmetry in potential benefit for the two crabs from a shell exchange suggested that the duration of the fight increased as the potential benefit increased. Further experiments indicated that a naked crab was capable of evicting a housed crab by a process of direct aggression. Analysis of fights in which there was a slight asymmetry in potential gains from shell exchange indicated that the result of the fight was primarily determined by the large of the two crabs. These results are contrary to the proposal of Hazlett (1978) that the interactions represent a process of negotiation rather than aggression.     

How does life adapt to a gravitational environment? The outline of the terrestrial gastropod shell

How do several characteristics adapt to gravity while mutually influencing each other? Our study addresses this issue by focusing on the terrestrial gastropod shell. The geometric relationship between the spire index (shell height/diameter) and outline (cylindricality) is theoretically estimated. When the shell grows isometrically, a high-spired shell becomes conical in shape and a low-spired shell becomes cylindrical in shape. A physical model shows that the lowest- and highest-spired shells are the most balanced. In addition, a cone shape is the most balanced for a low-spired shell, and a column shape is the most balanced for a high-spired shell. Spire index and cylindricality measured for freshwater gastropods follow the relationship estimated by the model, whereas those for terrestrial gastropods deviate from this relationship. This translates to a high shell being more cylindrical than a flat shell, except in the case of extremely high or low shells. This suggests that the shape of the most balanced shells (lowest and highest shell heights) is constrained by coiling geometry but that relatively unbalanced shells (intermediate shell heights) do not follow a coiling geometry, as a result of adaptation to enable the snail to carry its shell more effectively.     

Asymmetry and growth rate of the shell valves in juveniles of Crassostrea gigas Thünberg

Thanks to a sampling of juvenile oysters with different growth rates (slow, medium and fast), a subtle biometrical study of their shell evolution is described distinguishing the two valves. We conclude that all the phenomena are dominated by the early establishment of a directional asymmetry, which rapidly becomes so large that we should consider dissymmetry. The clearest relationship is revealed to be that between the weakness of the growth rate and the degree of the relative dissymetry between the weights of the valves. This result is to be compared with the highly debated relationship between the asymmetry and the growth rate. The existence and interpretation of both of these phenomena have led to many publications.     

Utilization of the coconut shell of babaçu (Orbignya sp.) to produce cement-bonded particleboard

The zinc biosorptive capacity of the brown seaweed Sargassum sp. (Phaeophyceae) was studied in the presence or absence of competing calcium ions, using a continuous system with tubular fixed-bed reactors. In order to detect the effect of calcium on zinc biosorption, a 130 mg/l zinc solution was used, and calcium was added at 50-340 mg/l. The potential zinc biosorptive capacity of the biomass was markedly influenced by the presence of ionic calcium. Zinc sorption decreased with increasing calcium concentrations, as expressed by zinc uptake rates. Calcium was effectively recovered only during the initial stages of the process, as expressed by the decrease in its uptake rates. Calcium uptake rates were also much higher than zinc uptake rates, indicating that calcium was preferentially recovered when compared to zinc.     

Analysis of the finescale timing of repeated signals: does shell rapping in hermit crabs signal stamina?

Hermit crabs, Pagurus bernhardus, sometimes exchange shells after a period of shell rapping, when the initiating or attacking crab brings its shell rapidly and repeatedly into contact with the shell of the noninitiator or defender in a series of bouts. Bouts are separated by pauses, and raps within bouts are separated by very short periods called 'gaps'. Since within-contest variation is missed when signals are studied by averaging performance rates over entire contests, we analysed the fine within-bout structure of this repeated, aggressive signal. We found that the pattern is consistent with high levels of fatigue in initiators. The duration of the gaps between individual raps increased both within bouts and from bout to bout, and we conclude that this activity is costly to perform. Furthermore, long pauses between bouts is correlated with increased vigour of rapping in the subsequent bout, which suggests that the pause allows for recovery from fatigue induced by rapping. These between-bout pauses may be assessed by noninitiators and provide a signal of stamina. Copyright 2000 The Association for the Study of Animal Behaviour.     

Will providing a filamentous substratum in the water column and shell litter on the bottom increase settlement and post-larval survival of the scallop Argopecten purpuratus?

The marked variability in the natural recruitment of Argopecten purpuratus, a common characteristic for many marine invertebrates with a pelagic larval stages, with important consequences for community functioning, is a problem for the fishery on this species. We ran experiments in the subtidal zone in Tongoy Bay, Chile, to test whether providing a filamentous settlement substratum in the water column and shell litter on the bottom would increase the settlement and post-larval survival of scallops. We placed collectors made of Netlon® 50 cm above the sand and mud bottoms, and three and a half months later there were significantly more scallop spat on the bottom under the collectors (38.5 ind m^− 2), than in areas without collectors (0 ind m^− 2), or in controls where collectors were installed but a bag around the collector prevented the juveniles from falling to the bottom (4.8 ind m^− 2). Also, the addition of either entire or broken scallop shells to the bottom resulted in increased settlement of juveniles on the bottom (33.7 ind m^− 2 with entire shells and 48.1 ind m^− 2 with broken shells), compared to plots where no shell debris was added (0 ind m^− 2). The 2 week survival rate of juveniles (< 3 mm shell height) added to plots covered with entire scallop shells (12.4%) and to plots covered with broken shells (15.1%) was greater than in plots where we did not add shells (3.5%). These results suggest that substrate availability explains spatial variability of recruitment for this species, while temporal variability (between years) is mainly the consequence of larval supply. The manipulation of substrates can locally increase settlement, but will not remove the temporal variability. Whereas our experiments provide useful insights into strategies for managing or establishing local scallop populations, experiments over a longer term and at a large scale are needed to further understand the community functioning in order to develop a strategy for managing this fishery resource.     

Deep radiomic model based on the sphere–shell partition for predicting treatment response to chemotherapy in lung cancer

BackgroundThe prognosis of chemotherapy is important in clinical decision-making for non-small cell lung cancer (NSCLC) patients.ObjectivesTo develop a model for predicting treatment response to chemotherapy in NSCLC patients from pre-chemotherapy CT images.Materials and MethodsThis retrospective multicenter study enrolled 485 patients with NSCLC who received chemotherapy alone as a first-line treatment. Two integrated models were developed using radiomic and deep-learning-based features. First, we partitioned pre-chemotherapy CT images into spheres and shells with different radii around the tumor (0–3, 3–6, 6–9, 9–12, 12–15 mm) containing intratumoral and peritumoral regions. Second, we extracted radiomic and deep-learning-based features from each partition. Third, using radiomic features, five sphere–shell models, one feature fusion model, and one image fusion model were developed. Finally, the model with the best performance was validated in two cohorts.ResultsAmong the five partitions, the model of 9–12 mm achieved the highest area under the curve (AUC) of 0.87 (95% confidence interval: 0.77–0.94). The AUC was 0.94 (0.85–0.98) for the feature fusion model and 0.91 (0.82–0.97) for the image fusion model. For the model integrating radiomic and deep-learning-based features, the AUC was 0.96 (0.88–0.99) for the feature fusion method and 0.94 (0.85–0.98) for the image fusion method. The best-performing model had an AUC of 0.91 (0.81–0.97) and 0.89 (0.79–0.93) in two validation sets, respectively.ConclusionsThis integrated model can predict the response to chemotherapy in NSCLC patients and assist physicians in clinical decision-making.     

Monte Carlo simulations in the isothermal-isobaric ensemble: use of a ‘shell’ particle for simulating polyatomic fluids

The recent reformulation of the isothermal-isobaric ensemble requires the use of a ‘shell’ particle to define uniquely the volume of the system, thereby avoiding the redundant counting of configurations. A previous modification of the Monte Carlo method, in which trial moves are generated and accepted consistent with the correct constant pressure partition function, is extended here to the case of polyatomic fluids. With a ‘shell’ molecule, either the centre of mass of the molecule or the location of any one of the atoms within the molecule can be chosen to define the system volume. Ensemble averages obtained with the use of the shell molecule differ from ensemble averages determined with the old (i.e. no shell particle) Monte Carlo algorithm, specifically for small system sizes, although both sets of averages become equal, as they must, in the thermodynamic limit. Monte Carlo simulations in the constant pressure ensemble for various Lennard-Jones polyatomic fluids, both for pure component and binary mixtures, demonstrate these differences for small systems. For mixtures, Monte Carlo simulations may include attempted identity swaps for the shell molecule, as the choice of which component serves as the shell molecule is arbitrary when periodic boundary conditions are applied.     

Isolation and characterization of 14 polymorphic microsatellite loci in the ark shell Scapharca subcrenata (Bivalvia: Arcidae)

The ark shell Scapharca subcrenata is an important fishery resource, but has been suffering from severe population decline due to the deterioration of the coastal environment and over-exploitation. To investigate the genetic variation and structure among populations of S. subcrenata, 14 polymorphic microsatellite loci were developed. The number of alleles per polymorphic locus ranged from 11 to 29 and the observed and expected heterozygosity varied from 0.400 to 0.923 and from 0.705 to 0.965, respectively. These microsatellites will help advance the investigation of the genetic population structure and genetic diversity in this species.     

Core–shell silver nanoparticles for optical labeling of cells

Silver nanoparticles have been modified with self-assembled monolayers of hydroxyl-terminated long chain thiols and encapsulated with a silica shell. The resulting core–shell nanoparticles were used as optical labels for cell analysis using flow cytometry and microscopy. The excitation of plasmon resonances in nanoparticles results in strong depolarized scattering of visible light, permitting detection at the single nanoparticle level. The nanoparticles were modified with neutravidin via epoxide–azide coupling chemistry, to which biotinylated antibodies targeting cell surface receptors were bound. The nanoparticle labels exhibited long-term stability in solutions with high salt concentrations without aggregation or silver etching. Labeled cells exhibited two orders of magnitude enhancement of the scattering intensity compared with unlabeled cells.     

Can AFLP genome scans detect small islands of differentiation? The case of shell sculpture variation in the periwinkle Echinolittorina hawaiiensis

Genome scans have identified candidate regions of the genome undergoing selection in a wide variety of organisms, yet have rarely been applied to broadly dispersing marine organisms experiencing divergent selection pressures, where high recombination rates can reduce the extent of linkage disequilibrium (LD) and the ability to detect genomic regions under selection. The broadly dispersing periwinkle Echinolittorina hawaiiensis exhibits a heritable shell sculpture polymorphism that is correlated with environmental variation. To elucidate the genetic basis of phenotypic variation, a genome scan using over 1000 AFLP loci was conducted on smooth and sculptured snails from divergent habitats at four replicate sites. Approximately 5% of loci were identified as outliers with Dfdist, whereas no outliers were identified by BayeScan. Closer examination of the Dfdist outliers supported the conclusion that these loci were false positives. These results highlight the importance of controlling for Type I error using multiple outlier detection approaches, multitest corrections and replicate population comparisons. Assuming shell phenotypes have a genetic basis, our failure to detect outliers suggests that the life history of the target species needs to be considered when designing a genome scan.     

Cracks in the shell—zooming in on eggshell formation in the human parasite <Emphasis Type="Italic">Schistosoma mansoni</Emphasis>

Schistosomiasis, currently the second most common parasitic disease of humans in tropical regions is caused by the eggs of trematode worms of the genus Schistosoma. Understanding egg formation and specifically the synthesis of the eggshell comprises, consequently, a promising starting point to cure and prevent the disease. To shed light on the genetics of the latter process, we analysed the three known S. mansoni eggshell proteins P14, P19 and P48 against the background of the species inferred proteome and of eggshell proteins identified in other trematode species. Our results suggest that eggshell formation in Schistosoma involves a multitude of different proteins organised in currently three distinct protein families (P14, P48 and P34 eggshell protein family). The first two families are of simple structure. Their respective members share a substantial degree of sequence similarity and are, to date, observed only in the genus Schistosoma. In contrast, the P34 family of eggshell proteins is complex. Its in part highly diverged members share only a conserved motif of 67-aa length on average and are detected in various trematode species. The resulting widespread occurrence of this protein motif suggests an important role during eggshell formation in trematodes. Screening more than 7,000 putative proteins of S. mansoni, we could identify six new members of the P34 protein family that are likely to be involved in eggshell formation in this species.Electronic Supplementary Material Supplementary material is available for this article at .     

Relationships between broodstock condition,oocyte quality,and 24 h D-larval survival during the spawning season of the pullet carpet shell Venerupis corrugata (Gmelin, 1791)

Abstract

Venerupis corrugata is commercially exploited in Europe. Over-fishing and recruitment failure is causing the decline of its populations and stock sustainability. Knowledge of this species reproduction is paramount to establish hatchery production of juveniles for restoring natural beds. This work aimed to find a relationship between broodstock condition, oocyte quality, and viability of 24 h D-larvae. Adult specimens were induced to spawn by thermal stimulation. From each female, oocytes were taken for biochemical analyses (proteins, total lipids, and carbohydrates), and the remaining oocytes were fertilized. The 24 h D-larval yield was calculated after embryo incubation. Spawning in the hatchery with ‘wild’ broodstock was possible for a long period, however, subsequent larval viability varied according to oocyte quality. Two distinct periods of spawning were recorded: in January/March, with a higher number of oocytes released, and in June/July with a lower response to the spawning stimulation, however with greater success in 24 h D-larval survival. The condition index of broodstock and the total lipids of oocytes released can be used as benchmarks for estimating the success of D veliger larvae.     

Computational modeling of the effective Young’s modulus values of fullerene molecules: a combined molecular dynamics simulation and continuum shell model

Estimating the Young’s modulus of a structure in the nanometer size range is a difficult task. The reliable determination of this parameter is, however, important in both basic and applied research. In this study, by combining molecular dynamics (MD) simulations and continuum shell theory, we designed a new approach to determining the Young’s modulus values of different spherical fullerenes. The results indicate that the Young’s modulus values of fullerene molecules decrease nonlinearly with increasing molecule size and understandably tend to the Young’s modulus of an ideal flat graphene sheet at large molecular radii. To the best of our knowledge, this is first time that a combined atomistic–continuum method which can predict the Young’s modulus values of fullerene molecules with high precision has been reported.