The basis of the hydrophobic effect

The property of a molecule that most reliably determines the magnitude of the hydrophobic effect that it will experience is the number of hydrogen–carbon bonds it contains not the accessible surface area of its nonpolar portions. This conclusion follows from an examination of the standard free energies of transfer of alkanes, alkenes, alkadienes, and arenes from water to hexadecane. When the standard free energies of transfer for hydrocarbons in these different classes are plotted as a function of the number of hydrogen–carbon bonds they contain, all of the data fall upon the same line. These standard free energies of transfer are also directly proportional to the number of hydrogen–carbon bonds the hydrocarbons contain. When the same standard free energies of transfer are plotted as a function of the accessible surface areas of the hydrocarbons, the data do not fall upon the same line nor are the standard free energies of transfer directly proportional to the accessible surface areas. An examination of the standard free energies of transfer for the different classes of hydrocarbons from the gas phase to water and from the gas phase to hexadecane reinforces the conclusion that the number of hydrogen–carbon bonds in a molecule rather than its accessible surface area is the basis of the hydrophobic effect. Consequently, estimates of the contribution of different functional groups to the hydrophobic effect providing the free energy of folding of a molecule of protein or providing the free energy of dissociation for the association of two proteins or the association of a ligand with a protein should be made by counting the number of hydrogen–carbon bonds excluded from water rather than computing the accessible surface areas excluded from water.     

Anaerobic mineralization of marine sediment organic matter: Rates and the role of anaerobic processes in the oceanic carbon economy

Abstract

This paper addresses three related questions: (1) What factors control the efficiency of carbon burial in sediments? (2) Are rates of anaerobic organic matter degradation intrinsically lower than aerobic rates? (3) How important are anaerobic processes in the global marine sediment carbon economy?

Carbon burial efficiency (the ratio of the carbon burial rate and the carbon flux to the sediment surface) was estimated from literature data for a range of environments and was shown to be a function of sedimentation rate. No difference independent of sedimentation rate was found between aerobic and anaerobic sediments.

A review of recent microcosm and laboratory studies shows that anaerobic rates are not intrinsically lower than aerobic rates; fresh organic matter degrades at similar rates under oxic and anoxic conditions. Aerobic decomposition rates near the sediment surface are typically greater than anaerobic rates at depth because the most labile carbon is consumed before it can be buried in the anoxic zone.

A model approach was taken in estimating the importance of anaerobic processes in the global marine sediment economy, instead of extrapolating measured rates as done previously. The result, 150 Tg C yr^?1, is two to nine times lower than previous estimates. This rate is about 9% of the global aerobic carbon oxidation rate and is about equal to the rate of long‐term carbon burial. The importance of anaerobic processes in marine sediments lies in their role in determining the amount of carbon preserved, not in the amount of carbon remineralized overall.     

A Sediment Penetrometer for in situ Determination of Sediment Type and Potential Bottom Dynamic Conditions

Comparison of the shear strength at the surface of underwater sediments provides a simple means of characterizing areas of erosion, transportation and accumulation. A triple cone penetrometer has been developed to obtain relative sediment penetration data, in situ. Following calibration of the instrument on selected samples from lakes and coastal areas, relative data are used to characterize a wide range of bottom types. The cone data are useful in, e.g., contexts of coastal planning and aquatic pollution control, i. e., in matters where sediment distribution maps for entire lakes and coastal areas are requested rather than detailed information from specific sites. The instrument provides rough but objective data on sediment type without samples being taken and laboratory analysis being done. The total weight of the instrument is 7.5 kg, which makes it easy to operate by hand from a small boat.     

The role of amoeboid protists and the microbial community in moss-rich terrestrial ecosystems: biogeochemical implications for the carbon budget and carbon cycle, especially at higher latitudes

Moss-rich terrestrial communities are widely distributed in low- and high-latitude environments, covering vast surface areas in the boreal forests and tundra. The microbial biota in these organic-rich communities may contribute substantially to the carbon budget of terrestrial communities and the carbon cycle on a global scale. Recent research is reported on the carbon content of microbial communities in some temperate and high-latitude moss communities. The total carbon content and potential respiratory carbon dioxide (CO(2)) efflux is reported for bacteria, microflagellates, naked amoebae, and testate amoebae within sampling sites at a northeastern forest and the tundra at Toolik, Alaska. Quantitative models of the predicted total CO(2) efflux from the microbes, based on microscopic observations and enumeration of the microbiota in samples from the research sites, are described and predictions are compared with published field-based data of CO(2) efflux. The significance of the predictions for climate change and global warming are discussed.     

仪器的加热效应校正对生态系统碳水通量估算的影响

涡度相关技术的广泛应用为获取生态系统碳、水通量提供了可能,但在开路式涡度相关系统中,仪器的加热效应增大了观测数据的不确定性。为了衡量仪器的加热效应,以ChinaFLUX3个典型生态系统(长白山温带针阔混交林(CBS)、海北灌丛草甸(HBGC)、鼎湖山亚热带常绿阔叶林(DHS))为研究对象,就仪器的加热效应校正对碳、水通量估算的影响进行分析。结果表明:加热校正没有改变生态系统的能量闭合特征,也没有对水汽通量的估算产生影响,但显著减小了CBS和HBGC非生长季的净生态系统生产力(NEP),进而减少了NEP的年总量,对DHS没有显著影响。NEP减小幅度受到温度的强烈影响,CBS为7.7%～10.4%,远小于HBGC的76.6%～85.2%,HBGC的NEP大幅降低主要是由夜间NEP的改变导致生态系统呼吸(RE)的增大而引起。因而,在温带生态系统中,充分考虑加热校正对于准确估算生态系统的碳收支具有重要作用。     

Impact of sinking carbon flux on accumulation of deep-ocean carbon in the Northern Indian Ocean

The export of carbon through the biological pump from the surface to the deep ocean has a direct influence on the removal of CO₂ from the atmosphere. This is because the carbon is sequestered for only a few days to months in the surface while the carbon removed from the surface to deep waters takes hundreds of years to re-enter the atmosphere. The highest dissolved inorganic carbon (DIC) is expected in the deep waters of the North Pacific due to longer age of waters. On contrary, the higher deep water DIC is found in the northern Indian Ocean than elsewhere in the World Oceans. The sinking fluxes of particulate organic (POC) and inorganic carbon (CaCO₃) are found to be the highest in the northern Indian Ocean. The rates of bacterial respiration, organic carbon regeneration and inorganic carbon dissolution are also found to be the highest in the northern Indian Ocean than elsewhere. A most efficient biological pump appears to be operating in the northern Indian Ocean that transports surface-derived organic/inorganic carbon to deeper layers where it is converted and stored for longer times in dissolved inorganic form.     

中国科学院清原森林生态系统观测研究站塔群平台的功能和应用

森林生态系统结构与生态服务功能关系是森林生态学和林学的永恒研究主题。受传统森林调查方法及技术手段的限制,对复杂地形下森林生态系统结构和功能的监测及二者关系的研究面临诸多挑战。在中国科学院野外站网络重点科技基础设施建设项目的支持下,中国科学院清原森林生态系统观测研究站在独立流域内建成了以观测塔群(三座观测塔覆盖各自子流域代表性森林类型)为主体,集激光雷达(LiDAR)、通量仪器、水文站网、固定标准地和数据中心为综合体的“次生林生态系统塔群激光雷达监测平台”(简称塔群平台)。塔群平台采用激光雷达扫描获取森林点云数据,描述森林生态系统的全息三维结构;依托独立流域/子流域内的通量监测系统、水文监测站网和通量源区内的长期固定标准地,可保证碳-水过程观测的可靠性,并用于验证复杂地形下的通量监测技术与方法,揭示森林生态水文与碳交换过程,准确估算森林生态系统主体生态服务功能(水源涵养和固碳)。所有“塔-站”数据通过无线网络实时汇集于数据中心,便于数据监视、管理与共享。此外,塔群平台将侧重研究森林生态系统结构量化的新方法和新指标,探索复杂地形森林生态系统中H₂O/CO₂/痕量气体通量观测的理论与方法,为阐明森林结构与功能的关系、服务于森林生态系统管理提供基础数据。     

陆地生态系统碳通量面临的挑战与机遇——基于涡度协方差测定

区域和全球涡度协方差网络提供了基于陆地-大气生态系统间最大的综合性原位碳通量观测数据集。这些数据目前已成为自下而上核算陆地生态系统碳平衡的基础,但部分测量数据合理性问题引起通量界广泛关注。通过梳理近40年研究进展,总结了涡度协方差测量原理,系统地分析了仪器局限性和环境因素潜在影响,讨论了不同碳通量组分填补存在的争议、生态系统冬季休眠期的净碳吸现象违背生理学知识、夜间湍流发展不充分对生态系统呼吸的低估等,并由此产生数据偏移和测量滞后时间等。通过阐述涡度协方差测量原理和数据处理存在的缺陷与争议,提出了适当的改进措施以限制(或降低)数据测量产生的不确定性,旨在为后续监测精度提升和探究陆地生态系统碳循环及其对环境因子的响应提供理论支撑。     

陆地碳循环研究中植物生理生态过程模拟进展

植物生理生态过程的模拟是陆地碳循环模型研究中的关键过程之一,就与碳循环过程密切相关的3个关键的植物生理生态过程;光合作用,碳分配和物候等过程的数学模式进行分类：（1）光合作用模式,根据光合作用模式基础的不同把光合作用模式分为：半经验模式;机理模式和使用卫星遥感资料的模式等;（2）植物碳分配模式介绍了功能平衡模式;运输-阻力模式;光合作用与生长模式;环境反应模式和大尺度生态系统模式等5类。（3）植被物候模式;根据观测和参数化方法的不同可以将现有的物候数值模式分为两类;观测统计模式和使用卫星遥感资料的物候模式,对各类模式的主要控制方程,研究进展和应用分别进行了简要评述。     

Pyrolysis of plant, animal and human waste: physical and chemical characterization of the pyrolytic products

Pyrolysis (carbonization) has been proposed as one of several optional technologies for disposing and recycling waste products in Japan. Plant wastes (sugarcane bagasse and rice husks), animal waste (cow biosolids) and human waste (treated municipal sludge) were pyrolyzed at temperatures from 250–800 °C in closed containers. The carbonized materials were evaluated for specific physical properties (yield, surface area, density) and specific chemical properties (total carbon, total nitrogen, pH, fixed carbon, ash content, volatility) in order to compare differences in properties among the four waste products. The results indicated that (1) surface area, total carbon, ash content and pH increased as the carbonization temperature increased, while carbonization yield decreased with increasing temperature, (2) product density however was not affected by temperature and (3) correlation coefficients were determined among the physical and chemical properties and several significant correlations were observed. The data indicate that source material had considerable influence on the physical and chemical properties of the carbonized products.     

土地利用变化对川西米亚罗林土壤活性碳库的影响

为了揭示土地利用变化对土壤活性有机碳库的影响,在四川省亚高山米亚罗林区,以原始冷杉林(M-Y)和由原始林转化成的45年龄云杉人工林(M-60)、25年龄云杉人工林(M-80)和菜地(M-C)等4种土地利用类型为研究对象,进行了土壤的微生物量碳(MBC)、水溶性有机碳(WDOC)和易氧化有机碳(LOC)的含量和季节变化研究.结果表明,土地利用变化明显影响土壤活性有机碳组分的含量,其中微生物量碳和水溶性有机碳的变化趋势为M-Y>M-60>M-80>M-C,易氧化有机碳的变化趋势则为M-60>M-Y.土地利用变化没有改变活性有机碳各组分的垂直分布,各组分均随着土层深度的增加而降低,季节变化幅度较小,但枯落物层和表层土壤的变化幅度明显高于深层土壤,而各组分的分配比例变化幅度明显小于活性有机碳含量的变化.     

Production and comparison of high surface area bamboo derived active carbons

High surface area activated carbons have been produced from the natural biomaterial bamboo, using phosphoric acid as the activating agent. The effects of phosphoric acid impregnation ratio, activation temperature, heating rate on the carbon surface area, porosity and mass yield are presented. Three of these bamboo derived active carbons, surface areas 1337, 1628 and 2123m(2)/g were assessed for their ability to adsorb Acid Red 18 dye from aqueous solution; these results were compared with three conventional adsorbents: activated carbon F400, bone char and peat. Isotherm data were analysed using Langmuir, Freundlich, Redlich-Peterson and Langmuir-Freundlich isotherms. Different isotherms provided the best fit correlations to the adsorption experimental data but the Langmuir-Freundlich equation provided the best overall correlation of data. The adsorption capacities of two of the selected bamboo derived carbons were much greater than the capacities of the other three adsorbents.     

On the elastic properties of single-walled carbon nanotubes/poly(ethylene oxide) nanocomposites using molecular dynamics simulations

Molecular dynamics simulations are used to study the physical and mechanical properties of single-walled carbon nanotubes/poly(ethylene oxide) nanocomposites. The effects of nanotube atomic structure, diameter, and volume fraction on the polymer density distribution, polymer atom distribution, stress–strain curves of nanocomposites and Young’s, and shear moduli of single-walled carbon nanotubes/poly(ethylene oxide) nanocomposites are explored. It is shown that the density of polymer, surrounding the nanotube surface, has a peak near the nanotube surface. However, increasing distance leads to dropping it to the value near the density of pure polymer. It is seen that for armchair nanotubes, the average polymer atoms distances from the single-walled carbon nanotubes are larger than the polymer atom distance from zigzag nanotubes. It further is shown that zigzag nanotubes are better candidates to reinforce poly (ethylene oxide) than their armchair counterparts.     

Design and demonstration of a dynamometric horseshoe for measuring ground reaction loads of horses during racing conditions

Because musculoskeletal injuries to racehorses are common, instrumentation for the study of factors (e.g. track surface), which affect the ground reaction loads in horses during racing conditions, would be useful. The objectives of the work reported by this paper were to (1) design and construct a novel dynamometric horseshoe that is capable of measuring the complete ground reaction loading during racing conditions, (2) characterize static and dynamic measurement errors, and (3) demonstrate the usefulness of the instrument by collecting example data during the walk, trot, canter, and gallop for a single subject. Using electrical resistance strain gages, a dynamometric horseshoe was designed and constructed to measure the complete ground reaction force and moment vectors and the center of pressure. To mimic the load transfer surface of the hoof, the shape of the surface contacting the ground was similar to that of the solar surface of the hoof. Following static calibration, the measurement accuracy was determined. The root mean squared errors (RMSE) were 3% of full scale for the force component normal to the hoof and 9% for force components in the plane of the hoof. The dynamic calibration determined that the natural frequency with the full weight of a typical horse was 1744 Hz. Example data were collected during walking on a ground surface and during trotting, cantering, and galloping on a treadmill. The instrument successfully measured the complete ground reaction load during all four gaits. Consequently the dynamometric horseshoe is useful for studying factors, which affect ground reaction loads during racing conditions.     

Surface Features of Bacillus polymyxa Spores as Revealed by Scanning Electron Microscopy

The surface features of Bacillus polymyxa spores were compared by use of thin sections, carbon replicas, and the scanning electron microscope. Some features of the characteristic ridges, previously reported in ultrathin sections and carbon replicas of spores of this species, were more clearly revealed with the scanning electron microscope. A three-dimensional image is provided because of the greater depth of focus possible with this instrument. End-on views of B. polymyxa spores readily illustrate the polygonal porelike structure present.     

Advances in surface plasmon resonance biosensor analysis

The number and diversity of surface plasmon resonance (SPR) biosensor applications continue to increase. Evolutions in instrument and sensor chip technology, experimental methodology, and data analysis are making it possible to examine a wider variety of biomolecular interactions in greater mechanistic detail. SPR biosensors are poised to make a significant impact in basic research and pharmaceutical discovery.     

Fundamental Technical Elements of Freeze-fracture/Freeze-etch in Biological Electron Microscopy

Freeze-fracture/freeze-etch describes a process whereby specimens, typically biological or nanomaterial in nature, are frozen, fractured, and replicated to generate a carbon/platinum “cast” intended for examination by transmission electron microscopy. Specimens are subjected to ultrarapid freezing rates, often in the presence of cryoprotective agents to limit ice crystal formation, with subsequent fracturing of the specimen at liquid nitrogen cooled temperatures under high vacuum. The resultant fractured surface is replicated and stabilized by evaporation of carbon and platinum from an angle that confers surface three-dimensional detail to the cast. This technique has proved particularly enlightening for the investigation of cell membranes and their specializations and has contributed considerably to the understanding of cellular form to related cell function. In this report, we survey the instrument requirements and technical protocol for performing freeze-fracture, the associated nomenclature and characteristics of fracture planes, variations on the conventional procedure, and criteria for interpretation of freeze-fracture images. This technique has been widely used for ultrastructural investigation in many areas of cell biology and holds promise as an emerging imaging technique for molecular, nanotechnology, and materials science studies.     

Bacterial community in the biofilm of granular activated carbon (GAC) PreBiofilter in bench-scale pilot plants for surface water pretreatment

Biofilters of granular activated carbon (GAC) are responsible for the removal of organic matters in drinking water treatments. PreBiofilters, which operate as the first unit in a surface water treatment train, are a cost-effective pretreatment for conventional surface water treatment and provide more consistent downstream water quality. This study investigated bacterial communities from the samples of raw surface water, biofilm on the PreBiofilter, and filtrates for surface water pretreatment. A bench-scale pilot plant of PreBiofilter was constructed to pretreat surface water from the Canoochee River, GA, USA. PreBiofilter exhibited a significant reduction of total organic carbon and dissolved organic carbon. The evenness and Shannon diversity of bacterial operational taxonomic units (OTUs) were significantly higher on the biofilm of PreBiofilter than in raw water and filtrates. Similar bacteria communities were observed in the raw water and filtrates using relative abundance of bacterial OTUs. However, the bacterial communities in the filtrates became relatively similar to those in the biofilm using presence/absence of bacterial OTUs. GAC biofilm or raw water and filtrates greatly contributed to the abundance of bacteria; whereas, bacteria sheared from colonized biofilm and entered filtrates. Evenly distributed, diverse and unique bacteria in the biofilm played an important role to remove organic matters from surface water for conventional surface water pretreatment.     

尿酸在聚6-甲基香豆素修饰的玻碳电极上的电化学行为

制备了聚6-甲基香豆素修饰玻碳电极,研究了尿酸(UA)在该修饰电极上的电化学行为。实验结果表明:在pH=5.0的磷酸盐缓冲溶液中,扫描速率为50mV/s时,尿酸在修饰电极上于0.352V处产生一个灵敏的氧化峰,在0.278V处有一弱的还原峰。经线性扫描伏安法测定,氧化峰电流与尿酸浓度在2.5×10-6～1.0×10-5mol/L范围内表现出良好的线性关系,检出限为1.0×10-6mol/L。将修饰电极在常温下放置50d及将体系温度升高到75℃时,修饰电极对尿酸的响应电流大体不变,结果满意。