Characterization of biological diversity through analysis of discrete cranial traits

In the present study, the frequency distributions of 20 discrete cranial traits in 70 major human populations from around the world were analyzed. The principal-coordinate and neighbor-joining analyses of Smith's mean measure of divergence (MMD), based on trait frequencies, indicate that 1). the clustering pattern is similar to those based on classic genetic markers, DNA polymorphisms, and craniometrics; 2). significant interregional separation and intraregional diversity are present in Subsaharan Africans; 3). clinal relationships exist among regional groups; 4). intraregional discontinuity exists in some populations inhabiting peripheral or isolated areas. For example, the Ainu are the most distinct outliers of the East Asian populations. These patterns suggest that founder effects, genetic drift, isolation, and population structure are the primary causes of regional variation in discrete cranial traits. Our results are compatible with a single origin for modern humans as well as the multiregional model, similar to the results of Relethford and Harpending ([1994] Am. J. Phys. Anthropol. 95:249-270). The results presented here provide additional measures of the morphological variation and diversification of modern human populations.     

Maximum-likelihood variance components analysis of heritabilities of cranial nonmetric traits

Nonmetric traits of the cranium are often used to support hypotheses of the history and divergence of human populations. These studies rely on the assumption that nonmetric traits are heritable, yet few skeletal series exist with associated pedigree information that allow for the calculation of additive genetic variance, or heritability. In addition, traits for which heritabilities have been published represent dichotomous present/absent forms instead of the range of expression that can be observed for many nonmetric characters. In the present study I use a maximum-likelihood variance components analysis to calculate univariate narrow-sense heritability estimates on the skeletal series from Hallstatt, Austria, for 9 sutural bones, 27 multilevel traits, and dichotomized present/absent forms for 19 of these multilevel characters. Most of the trait heritabilities do not differ significantly from a model of h2 = 0, and they have large standard errors. In a heuristic comparison of multilevel versus dichotomous trait forms, most of the nonmetric characters showed no differences in heritability between the two methods used for parsing the phenotypic variation, although where differences were noted, the presence-absence version had higher heritabilities. These results have implications not only for the use of particular nonmetric traits in population studies but also for the practice of character dichotomization in data collection.     

Basicranial axis length v. skull length in analysis of carnivore skull shape

Skull length is the measurement most commonly used as a standard against which other aspects of cranial morphology are compared to derive an index of relative size or proportions. However, skull length is composed of two different functional components, facial skull and cerebral skull, which vary independently and have different scaling relationships with body size. An analysis of carnivore skull shape with measurements standardized against basicranium length produced very different results than an analysis using skull length as the standard. For example, expressions of relative size of cranial measurements were reduced by 13% in mustelids and increased by 20% in canids, reflecting removal of jaw length (short in mustelids and long in canids) from the comparative standard (basicranial axis length). Cranial measurements scale with higher allometric exponents against basicranial axis length than against skull length.     

Functional cranial analysis of large animalivorous bats (Microchiroptera)

Large animalivorous bats include carnivorous, piscivorous and insectivorous microchiropterans. Skull proportions and tooth morphology are examined and interpreted functionally. Four wide- faced bats from four families are convergent in having wide skulls, large masseter muscle volumes and stout jaws, indicating a powerful bite. Three of the four also have long canine teeth relative to their maxillary toothrows. Carnivorous bats have more elongate skulls, larger brain volumes and larger pinnae. The wide-faced bats are all dral emitters and have heads positively tilted relative to the basicranial axis. The carnivorous species are nasal-emitting bats and have negatively tilted heads. The orientation of the head relative to the basicranial axis affects several characters of the skull and jaws and is not correlated with size. The speculation that the type of echolocation may be more of a determinant of evolutionary change than the feeding mechanism is addressed. Wide-faced bats are thought to be capable of eating hard prey items (durophagus) and are probably non- discriminating, aurally less sophisticated insect generalists while the carnivorous and non- durophagus insectivorous bats may be more discriminating and aurally more sophisticated in what they eat.     

High-resolution in-vivo analysis of normal brain response to cranial irradiation

Radiation therapy (RT) is a widely accepted treatment strategy for many central nervous system (CNS) pathologies. However, despite recognized therapeutic success, significant negative consequences are associated with cranial irradiation (CR), which manifests months to years post-RT. The pathophysiology and molecular alterations that culminate in the long-term detrimental effects of CR are poorly understood, though it is thought that endothelial injury plays a pivotal role in triggering cranial injury. We therefore explored the contribution of bone marrow derived cells (BMDCs) in their capacity to repair and contribute to neo-vascularization following CR. Using high-resolution in vivo optical imaging we have studied, at single-cell resolution, the spatio-temporal response of BMDCs in normal brain following CR. We demonstrate that BMDCs are recruited specifically to the site of CR, in a radiation dose and temporal-spatial manner. We establish that BMDCs do not form endothelial cells but rather they differentiate predominantly into inflammatory cells and microglia. Most notably we provide evidence that more than 50% of the microglia in the irradiated region of the brain are not resident microglia but recruited from the bone marrow following CR. These results have invaluable therapeutic implications as BMDCs may be a primary therapeutic target to block acute and long-term inflammatory response following CR. Identifying the critical steps involved in the sustained recruitment and differentiation of BMDCs into microglia at the site of CR can provide new insights into the mechanisms of injury following CR offering potential therapeutic strategies to counteract the long-term adverse effects of CR.     

An analysis of interspecific relationships ofSaguinus based on cranial measurements

The interspecific relationships of the following nine forms ofSaguinus were analyzed applying the multivariate analysis to the cranial measurements;S. oedipus, S. geoffroyi, S. leucopus, S. nigricollis, S. fuscicollis, S. labiatus, S. mystax, S. midas midas, andS. midas niger. Penrose's size distance was used to express the size factor among the nine forms; and for the shape factor, Q-mode correlation coefficients were utilized. The shape distance betweenS. oedipus andS. geoffroyi was almost equal to that betweenS. nigricollis andS. fuscicollis which are recognized as different species based on biogeographical evidence. Furthermore, the Penrose's size distance betweenS. oedipus andS. geoffroyi was quite large. Therefore, the results of this study support the hypothesis thatS. oedipus andS. geoffroyi are valid species. The analysis of the phylogenetic relationships among the nine forms was based on the shape factor only. The forms were divided into two main clusters: (1)S. oedipus, S. geoffroyi, andS. leucopus; (2)S. nigricollis, S. fuscicollis, S. labiatus, S. mystax, S. midas midas, andS. midas niger. In the former cluster,S. oedipus was more closely related toS. geoffroyi than either was toS. leucopus. The latter cluster was subdivided in two subclusters based on the degree of their affinity: (2a)S. nigricollis, S. fuscicollis, S. labiatus, andS. mystax; and (2b)S. midas midas andS. midas niger. In the former subcluster, [S. nigricollis, S. fuscicollis] and [S. labiatus, S. mystax] were classified into clusters, respectively. The ancestor of theS. nigricollis group differentiated intoS. oedipus, S. geoffroyi, andS. leucopus with the narrowing of the maxilla in the facial region, andS. midas midas andS. midas niger with the downward movement of rhinion.     

A comparative analysis of internal cranial anatomy in the hylobatidae

Craniometric studies on the hylobatids using external metrics (Creel and Preuschoft, 1976 , 1984 ) sorted hylobatid populations into primary species groupings which are in accordance with the four currently recognized generic‐level groupings. The goal of the current study was to assess the relative orientations of the orbits, palate, and basioccipital clivus among the hylobatid genera in an effort to further clarify whether the lesser apes differ significantly in these internal cranial features and how that variation patterns across the groups. Nine angular variables quantifying orbital, palatal, and basioccipital clivus orientations were measured on lateral view radiographs of adults representing three of the four hylobatid genera: Hylobates; Nomascus; and, Symphalangus. The interspecific adult hylobatid means for the angular variables were analyzed using t‐test contrasts. The total sample was further subjected to discriminant function analysis (DFA) to test for the ability of craniofacial angular variables to distinguish the hylobatid genera from one another. The three hylobatid genera displayed significant morphological differentiation in orbital, palatal, and posterior skull base orientations. Normal, jackknifed, and cross‐validation DFA procedures correctly identified the hylobatids 50–100% of the time. The observed morphological patterns generally mapped onto the findings of earlier external craniometric hylobatid studies and suggest concordance between specific internal and external cranial features. This article is the first comprehensive study of variation in internal cranial anatomy of the Hylobatidae and includes the first published craniofacial angular data for Nomascus. Am J Phys Anthropol 143:250–265, 2010. © 2010 Wiley‐Liss, Inc.     

Strain-specific telomere length revealed by single telomere length analysis in Caenorhabditis elegans

Terminal restriction fragment analysis is the only method currently available for measuring telomere length in Caenorhabditis elegans. Its limitations include low sensitivity and interference by the presence of interstitial telomeric sequences in the C.elegans genome. Here we report the adaptation of single telomere length analysis (STELA) to measure the length of telomeric repeats on the left arm of chromosome V in C.elegans. This highly sensitive PCR-based method allows telomere length measurement from as few as a single worm. The application of STELA to eight wild-type C.elegans strains revealed considerable strain-specific differences in telomere length. Within individual strains, short outlying telomeres were observed that were clearly distinct from the bulk telomere length distributions, suggesting that processes other than end-replication losses and telomerase-mediated lengthening may generate telomere length heterogeneity in C.elegans. The utility of this method was further demonstrated by the characterization of telomere shortening in mrt-2 mutants. We conclude that STELA appears to be a valuable tool for studying telomere biology in C.elegans.     

Sex determination of fragmentary crania by analysis of the cranial base

The cranial base can be used to determine the sex of fragmentary or deformed skulls. An initial study used nine measurements taken from 100 crania in the Terry Collection. The sample was divided equally by race and sex. Six regression models were formulated that predicted correctly the sex of the sample with 71-90% accuracy. In a separate test, a control sample of 20 skulls, also drawn from the Terry Collection but not involved with formulating the regression equations, was correctly classified with 70-85% accuracy.     

新生隐球菌的AFLP分析

目的评估AFLP-DNA指纹技术在新生隐球菌分类中应用情况。方法新生隐球菌基因组DNA用双酶酶切,双链接头连于其酶切末端,用与接头和酶切位点互补的引物扩增DNA片段,其产物在高分辨的变性聚丙酰胺凝胶上电泳分离,然后进行银染。结果分析来自5种血清型和临床分离株的18株新生隐球菌,可见有30多条大小在30～500bp的DNA-AFLP指纹,相同的血清型有不同的指纹图谱,来自同一患者不同病期的两株分离株和来自同一患者患者的不同部位的两株分离株都显示出相同的带型。结论显示了AFLP的高分辨率,是适用于新生隐球菌流行病学调查的有力工具。     

Frequency analysis of arterial pulse transmission in the cranial cavity]

The changes of intracranial and arterial pulse shape under functional loads (hypervolemia and intracranial hypertension) were compared. The logarithmic amplitude-frequency characteristics were found and used for the synthesis of equivalent electrical circuit of arterial pressure pulses transmission on cerebrospinal fluid (CSF) in the cranial cavity. The model obtained points to the necessity of taking into account the induction which was not performed in the earlier models of the CSF-system. It is found that the attenuation factor permitted to estimate the stability of the intracranial circulation system to input influences under different functional conditions.     

A factor analysis of cranial base and vault dimensions in children

Lengths within the cranial base and vault were measured in cephalometric radiographs of 220 boys and 177 girls ranging in age from 0 to 15 years; all these children are participants in The Fels Longitudinal Growth Study. The present study is based on mixed longitudinal data derived from 1640 radiographs for boys and 1260 radiographs for girls. Factor analysis was applied separately for boys and girls for each age group; i.e., 0–3, 4–6, 7–9, 10–12, and 13–15 years. For the 0–3 year age group, two factors were extracted in each sex, whereas four factors were extracted in the rest of the age groups. The factor structures are similar in the three older age groups of boys (7–9, 10–12, and 13–15 years). The first four factors for these groups are labelled, respectively: cranial vault size, posterior cranial base length, presphenoid length, and basisphenoid length. The order of the third and fourth factors is reversed in the 7–9 year olds. For girls, the factors extracted were also the same in both the 7–9 and 10–12 year age groups, even though the order of factors was different between age groups; i.e., anterior cranial base length, cranial vault size, basisphenoid length, and basioccipital length. Differential growth rates among cranial base dimensions probably cause changes in factor patterns. Obliteration of the spheno-occipital synchondrosis is suggested as the mechanism responsible for the change of factor pattern in the girls. Closure of this synchondrosis would have occurred too late to affect the patterns in boys.     

Functional expression of full length Limulus Factor C in stably transformed Sf9 cells

Limulus Factor C is a potent antagonist of endotoxin from Gram-negative bacteria. A fusion construct containing full length Factor C has been cloned intoSpodoptera frugiperda Sf9 cell. Stable Sf9 cell transfectants were obtained using Zeocin selection for 2 weeks. The recombinant Factor C (rFC) was secreted into the culture medium at 9 mg l^–1. Both the crude and partially purified rFC were able to detect lipid A at 10 pg ml^–1 in an ELISA-based lipid A binding assay.     

Accurate root length measurement by image analysis

Algorithms for estimating root length by image analysis should lead to results that have no systematic error (bias), be insensitive to preferential root orientation, valid across a wide range of sample sizes and adjust for overlap between roots in samples, to reduce the effort needed in spreading out root systems. We propose a new algorithm that forms a compromise between small bias and robustness (insensitivity to variation in sample size and preferential root orientation), and provide a simple way of dealing with root overlap. Image analysis was performed on a Macintosh computer using the public domain NIH Image program. The digital image of the root was processed to get the thinned image (skeleton). The numbers of orthogonally and diagonally connected pairs of pixels (N _o and N _d, respectively) in the skeleton were counted separately and used for length (L) calculation. A new length calculation equation was introduced so that the effect of orientation on length calculation was minimized; L=[N d ²+(N _d+N _o/2)²]^1/2+N _o/2. The maximum error due to orientation of a single line was evaluated for an ideal line, and the analysis revealed that the new equation was less affected by orientation than previous equations. Copper wire and rice (Oryza sativa L.) roots containing both primary and fine secondary root were measured manually and with image analysis. The two methods showed good agreement within 1.5%. The proposed image analysis method yielded length estimates with CV from 0.23 to 0.88%, which was lower than the CVs of the line-intersect method. Moreover, the lengths of overlapping samples were calculated correctly because the image analysis method distinguished an overlapping pixel from a thinned image, while the calculation with the line-intersect method showed underestimation because overlaps were not considered in that method. This revised version was published online in June 2006 with corrections to the Cover Date.