Bird Richness and Abundance in Response to Urban Form in a Latin American City: Valdivia,Chile as a Case Study

There is mounting evidence that urban areas influence biodiversity. Generalizations however require that multiple urban areas on multiple continents be examined. Here we evaluated the role of urban areas on avian diversity for a South American city, allowing us to examine the effects of urban features common worldwide, using the city of Valdivia, Chile as case study. We assessed the number of birds and their relative abundance in 152 grid cells of equal size (250 m²) distributed across the city. We estimated nine independent variables: land cover diversity (DC), building density (BD), impervious surface (IS),municipal green space (MG),non-municipal green space (NG), domestic garden space (DG), distance to the periphery (DP), social welfare index (SW), and vegetation diversity (RV). Impervious surface represent 41.8% of the study area, while municipal green, non-municipal green and domestic garden represent 11.6%, 23.6% and 16% of the non- man made surface. Exotic vegetation species represent 74.6% of the total species identified across the city. We found 32 bird species, all native with the exception of House Sparrow and Rock Pigeon. The most common species were House Sparrow and Chilean Swallow. Total bird richness responds negatively to IS and MG, while native bird richness responds positively to NG and negatively to BD, IS DG and, RV. Total abundance increase in areas with higher values of DC and BD, and decrease in areas of higher values of IS, SW and VR. Native bird abundance responds positively to NG and negatively to BD, IS MG, DG and RV. Our results suggest that not all the general patterns described in previous studies, conducted mainly in the USA, Europe, and Australia, can be applied to Latin American cities, having important implications for urban planning. Conservation efforts should focus on non-municipal areas, which harbor higher bird diversity, while municipal green areas need to be improved to include elements that can enhance habitat quality for birds and other species. These findings are relevant for urban planning in where both types of green space need to be considered, especially non-municipal green areas, which includes wetlands, today critically threatened by urban development.     

Prevalence of yeast-like fungi and evaluation of several virulence factors from feral pigeons in Seoul, Korea

Aims: Studies of pigeon‐borne yeasts have tended to focus on species, such as Cryptococcus neoformans and Candida albicans, with scant attention to feral pigeons in Korea. We studied the prevalence of yeasts from faecal samples of feral pigeons obtained in various public places in Seoul, Korea, and assessed their potential capacity as human pathogens. Methods and Results: Three hundred and six pigeon faeces samples were collected at city squares and parks in 21 localities in Seoul and Seoul Grand Park and analysed for yeast with conventional methods. Of the 306 samples, 126 (41·2%) were positive for yeast. Seventeen species of yeast were identified. The most frequent species were Candida glabrata (34·1%), Candida famata (12·7%), Cryptococcus albidus (14·3%) and Cryptococcus laurentii (7·9%). The yeast isolates were tested for virulence. Of the 116 isolates (ten isolates missing), 70·7% (n = 82) grew at 37°C. All the Cryptococcus spp. isolates possessed a capsule, 16·4% (n = 19) produced melanin, and 33·6% (n = 39) produced proteinase. Two Ca. glabrata, a Ca. famata and Ca. albicans as well as three C. neoformans, a C. laurentii and Ca. albicans isolates had three virulence factors. Accordingly, 29·3% (n = 34) isolates possessed more than two virulence factors except capsule formation. Conclusions: These results of this study indicate that feral pigeons harbour a variety of yeasts and are a reservoir of human pathogenic fungi. Significance and Impact of the Study: This study is the first time about the microflora (fungi) presents in faecal samples collected from a variety of public areas throughout Seoul, Korea.     

空气污染对信鸽比赛个体归巢速度的影响

空气污染作为一种有害的环境因素,对人类及动物的生理、心理均有影响.在鸟类中,信鸽(Columba livia)是研究空气污染影响的理想模型.为探究空气污染的行为学效应,通过收集并筛选2018和2019年成都市信鸽协会春秋两个季节举办的64场赛事共285羽参赛5场及以上的信鸽不同空距等级下的归巢速度,利用混合线性模型分析...     

Not so black,not so white:differences in microorganism load of contiguous feathers from white stork chicks

Many organisms are characterized by strikingly contrasting black and white coloration, but the function of such contrasts has been inadequately studied. In this article, we tested the function of black and white contrasting plumage in white stork Ciconia ciconia chicks. We found greater abundance and diversity of microorganisms on black compared with adjacent white feathers. In addition, nest size was positively correlated with the abundance and diversity of microorganisms on white feathers. Flight initiation distance (FID), defined as the distance at which adult white storks took flight when approached by a human, was negatively correlated with most measurements of microorganism abundance. Breeding success was generally positively correlated with the abundance and diversity of microorganisms on black feathers. The feather growth rate was positively correlated with some and negatively correlated with other measurements of microbial abundance and diversity. Finally, chick growth was negatively correlated with the number of microbial species on black feathers and positively with the abundance and diversity of microorganisms on white feathers. These findings are consistent not only with the role of microorganisms in the maintenance of a benign microbial environment which differs between black and white feathers, but also with the hypothesis that several taxa of microorganisms found in black and white plumage are virulent, with negative effects on the fitness of their hosts.     

Relative abundance of mature myostatin rather than total myostatin is negatively associated with bone mineral density in Chinese

Myostatin is mainly secreted by skeletal muscle and negatively regulates skeletal muscle growth. However, the roles of myostatin on bone metabolism are still largely unknown. Here, we recruited two large populations containing 6308 elderly Chinese and conducted comprehensive statistical analyses to evaluate the associations among lean body mass (LBM), plasma myostatin, and bone mineral density (BMD). Our data revealed that total myostatin in plasma was mainly determined by LBM. The relative abundance of mature myostatin (mature/total) was significantly lower in high versus low BMD subjects. Moreover, the relative abundance of mature myostatin was positively correlated with bone resorption marker. Finally, we carried out in vitro experiments and found that myostatin has inhibitory effects on the proliferation and differentiation of human osteoprogenitor cells. Taken together, our results have demonstrated that the relative abundance of mature myostatin in plasma is negatively associated with BMD, and the underlying functional mechanism for the association is most likely through inhibiting osteoblastogenesis and promoting osteoclastogenesis.     

Community composition and diversity of Neotropical root‐associated fungi in common and rare trees

Interactions between plants and root‐associated fungi can affect the assembly, diversity, and relative abundances of tropical plant species. Host–symbiont compatibility and some degree of host specificity are prerequisites for these processes to occur, and these prerequisites may vary with host abundance. However, direct assessments of whether specificity of root‐associated fungi varies with host abundance are lacking. Here, in a diverse tropical forest in Los Tuxtlas, Mexico, we couple DNA metabarcoding with a sampling design that controls for host phylogeny, host age, and habitat variation, to characterize fungal communities associated with the roots of three confamilial pairs of host species that exhibit contrasting (high and low) relative abundances. We uncovered a functionally and phylogenetically diverse fungal community composed of 1,038 OTUs (operational taxonomic units with 97% genetic similarity), only 14 of which exhibited host specificity. Host species was a significant predictor of fungal community composition only for the subset of OTUs composed of putatively pathogenic fungi. We found no significant difference in the number of specialists associating with common versus rare trees, but we found that host abundance was negatively correlated with the diversity of root fungal communities. This latter result was significant for symbiotrophs (mostly arbuscular mycorrhizal fungi) and, to a lesser extent, for pathotrophs (mostly plant pathogens). Thus, root fungal communities differ between common and rare trees, which may impact the strength of conspecific negative density dependence. Further studies from other tropical sites and host lineages are warranted, given the role of root‐associated fungi in biodiversity maintenance.     

Molecular diversity and distribution of marine fungi across 130 European environmental samples

Environmental DNA and culture-based analyses have suggested that fungi are present in low diversity and in low abundance in many marine environments, especially in the upper water column. Here, we use a dual approach involving high-throughput diversity tag sequencing from both DNA and RNA templates and fluorescent cell counts to evaluate the diversity and relative abundance of fungi across marine samples taken from six European near-shore sites. We removed very rare fungal operational taxonomic units (OTUs) selecting only OTUs recovered from multiple samples for a detailed analysis. This approach identified a set of 71 fungal ‘OTU clusters'' that account for 66% of all the sequences assigned to the Fungi. Phylogenetic analyses demonstrated that this diversity includes a significant number of chytrid-like lineages that had not been previously described, indicating that the marine environment encompasses a number of zoosporic fungi that are new to taxonomic inventories. Using the sequence datasets, we identified cases where fungal OTUs were sampled across multiple geographical sites and between different sampling depths. This was especially clear in one relatively abundant and diverse phylogroup tentatively named Novel Chytrid-Like-Clade 1 (NCLC1). For comparison, a subset of the water column samples was also investigated using fluorescent microscopy to examine the abundance of eukaryotes with chitin cell walls. Comparisons of relative abundance of RNA-derived fungal tag sequences and chitin cell-wall counts demonstrate that fungi constitute a low fraction of the eukaryotic community in these water column samples. Taken together, these results demonstrate the phylogenetic position and environmental distribution of 71 lineages, improving our understanding of the diversity and abundance of fungi in marine environments.     

哈尔滨市主要城市绿地特征和耦合关系

采用样方法调查了哈尔滨市17块绿地的植物多样性,研究城市绿地生态系统中本土植物多样性对外来植物的影响规律。结果如下:哈尔滨市绿地有75种外来植物,外来栽培植物42种,外来非栽培植物33种。在哈尔滨市绿地植物群落中,外来栽培植物的平均盖度、平均重要值和平均出现频度均较高;外来非栽培种的平均盖度、平均重要值较低,而平均出现频度较高。绿地本土植物物种数与外来栽培种、外来非栽培种的物种数极显著正相关(P<0.01),与外来非栽培种的平均出现频度显著负相关(P<0.05)。绿地乔木层本土植物的香农威尔指数、物种丰富度与外来栽培种、外来非栽培种的物种数均显著负相关(P<0.05),乔木层本土植物的均匀度与外来非栽培种的平均出现频度极显著负相关(P<0.01);灌木层本土植物的物种丰富度与外来栽培种的平均重要值显著负相关(P<0.05);草本层本土植物的均匀度与外来非栽培种的平均相对盖度显著正相关(P<0.05)。随绿地总面积的增加,外来栽培种和外来非栽培种的物种数增加,平均出现频度均呈现显著降低的趋势。随建成时间增加,外来栽培种的平均出现频度呈非线形变化,外来非栽培种的平均出现频度呈现降低的趋势。应提高哈尔滨市绿地本土植物的多样性,严格控制新建成的、总面积较小的绿地中外来植物的引种栽培管理,以防止外来植物发展成为危害本地生态系统的入侵植物。     

Similarities and spatial variations of bacterial and fungal communities in field rice planthopper (Hemiptera: Delphacidae) populations

Rice planthoppers are notorious plant sap‐feeding pests which cause serious damage. While several microbes in rice planthoppers have been broadly characterized, the abundance and diversity of bacteria and fungi in field planthoppers are largely unknown. This study investigated the bacterial and fungal community compositions of Chinese wild rice planthoppers Laodelphax striatellus and Sogatella furcifera using parallel 16S rRNA gene amplicon and internal transcribed space region sequencing. The bacteria varied significantly between the species and were partitioned significantly by sex, tissues and host environments in each species. The majority of bacteria were affiliated with the genera Wolbachia, Cardinium, Rickettsia and Pantoea. The abundance of Wolbachia was negatively correlated with that of Cardinium in both planthopper species. Compared with bacteria, the abundance and diversity of fungi did not differ between sexes but both were enriched in the gut. The bacterial community as a whole showed no significant correlation with the fungal community. The majority of fungi were related to Sarocladium, Alternaria, Malassezia, Aspergillus and Curvularia. A phylogenetic analysis revealed that these fungi were closely related to botanic symbionts or pathogens. Our results provide novel insights into the bacteria and fungi of rice planthoppers.     

Negative per capita effects of two invasive plants, Lythrum salicaria and Phalaris arundinacea, on the moth diversity of wetland communities

Invasive plants have been shown to negatively affect the diversity of plant communities. However, little is known about the effect of invasive plants on the diversity at other trophic levels. In this study, we examine the per capita effects of two invasive plants, purple loosestrife (Lythrum salicaria) and reed canary grass (Phalaris arundinacea), on moth diversity in wetland communities at 20 sites in the Pacific Northwest, USA. Prior studies document that increasing abundance of these two plant species decreases the diversity of plant communities. We predicted that this reduction in plant diversity would result in reduced herbivore diversity. Four measurements were used to quantify diversity: species richness (S), community evenness (J), Brillouin's index (H) and Simpson's index (D). We identified 162 plant species and 156 moth species across the 20 wetland sites. The number of moth species was positively correlated with the number of plant species. In addition, invasive plant abundance was negatively correlated with species richness of the moth community (linear relationship), and the effect was similar for both invasive plant species. However, no relationship was found between invasive plant abundance and the three other measures of moth diversity (J, H, D) which included moth abundance in their calculation. We conclude that species richness within, and among, trophic levels is adversely affected by these two invasive wetland plant species.     

Reduced Diversity and High Sponge Abundance on a Sedimented Indo-Pacific Reef System: Implications for Future Changes in Environmental Quality

Although coral reef health across the globe is declining as a result of anthropogenic impacts, relatively little is known of how environmental variability influences reef organisms other than corals and fish. Sponges are an important component of coral reef fauna that perform many important functional roles and changes in their abundance and diversity as a result of environmental change has the potential to affect overall reef ecosystem functioning. In this study, we examined patterns of sponge biodiversity and abundance across a range of environments to assess the potential key drivers of differences in benthic community structure. We found that sponge assemblages were significantly different across the study sites, but were dominated by one species Lamellodysidea herbacea (42% of all sponges patches recorded) and that the differential rate of sediment deposition was the most important variable driving differences in abundance patterns. Lamellodysidea herbacea abundance was positively associated with sedimentation rates, while total sponge abundance excluding Lamellodysidea herbacea was negatively associated with rates of sedimentation. Overall variation in sponge assemblage composition was correlated with a number of variables although each variable explained only a small amount of the overall variation. Although sponge abundance remained similar across environments, diversity was negatively affected by sedimentation, with the most sedimented sites being dominated by a single sponge species. Our study shows how some sponge species are able to tolerate high levels of sediment and that any transition of coral reefs to more sedimented states may result in a shift to a low diversity sponge dominated system, which is likely to have subsequent effects on ecosystem functioning.     

The effect of habitat and number of inhabitants on the population sizes of feral pigeons around towns in northern Poland

Most studies on factors influencing density of the feral pigeons Columba livia var. domestica were carried out in large cities and agglomerations. However, also in small towns, pigeons are important epidemiological and sanitary problem. In our studies, feral pigeons were censused in 33 towns located in the Pomeranian Province (northern Poland) during 2006–2008. These birds occurred in 19 (57.6%) towns. The number of pigeons was positively correlated with the area of the town, and it was significantly higher in towns localized in agricultural landscape than in towns surrounded by forests. We also found a significant effect of interactions between type of a landscape surrounding a town and residual number of inhabitants on the abundance of pigeons. In the largest towns of the Pomeranian Province, feral pigeons were concentrated mainly in central quarters. In smaller towns, they were noted in central parts or in areas with blocks of flats and even the suburbs. The obtained results suggest that food conditions in small and middle towns may be not sufficient for colonization by pigeons.     

Multi‐trophic impacts of an invasive aquatic plant

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Intraspecific chemical diversity among neighbouring plants correlates positively with plant size and herbivore load but negatively with herbivore damage

Intraspecific plant diversity can modify the properties of associated arthropod communities and plant fitness. However, it is not well understood which plant traits determine these ecological effects. We explored the effect of intraspecific chemical diversity among neighbouring plants on the associated invertebrate community and plant traits. In a common garden experiment, intraspecific diversity among neighbouring plants was manipulated using three plant populations of wild cabbage that differ in foliar glucosinolates. Plants were larger, harboured more herbivores, but were less damaged when plant diversity was increased. Glucosinolate concentration differentially correlated with generalist and specialist herbivore abundance. Glucosinolate composition correlated with plant damage, while in polycultures, variation in glucosinolate concentrations among neighbouring plants correlated positively with herbivore diversity and negatively with plant damage levels. The results suggest that intraspecific variation in secondary chemistry among neighbouring plants is important in determining the structure of the associated insect community and positively affects plant performance.     

Host and tissue variations overshadow the response of boreal moss‐associated fungal communities to increased nitrogen load

Human activity has more than doubled the amount of nitrogen entering the global nitrogen cycle, and the boreal forest biome is a nitrogen‐limited ecosystem sensitive to nitrogen load perturbation. Although bryophyte‐associated microbes contribute significantly to boreal forest ecosystem function, particularly in carbon and nitrogen cycling, little is known about their responses to anthropogenic global change. Amplicon pyrosequencing of the ITS2 region of rDNA was used to investigate how fungal communities associated with three bryophyte species responded to increased nitrogen loads in a long‐term fertilization experiment in a boreal Picea abies forest in southern Norway. Overall, OTU richness, community composition and the relative abundance of specific ecological guilds were primarily influenced by host species identity and tissue type. Although not the primary factor affecting fungal communities, nitrogen addition did impact the abundance of specific guilds of fungi and the resulting overall community composition. Increased nitrogen loads decreased ectomycorrhizal abundance, with Amphinema, Cortinarius, Russula and Tylospora OTUs responding negatively to fertilization. Pathogen abundance increased with fertilization, particularly in the moss pathogen Eocronartium. Saprophytic fungi were both positively and negatively impacted by the nitrogen addition, indicating a complex community level response. The overshadowing of the effects of increased nitrogen loads by variation related to host and tissue type highlights the complexity of bryophyte‐associated microbial communities and the intricate nature of their responses to anthropogenic global change.     

Changes in fungal diversity and composition along a chronosequence of Eucalyptus grandis plantations in Ethiopia

Eucalyptus tree species are widely used in Ethiopian plantations, but the impact of these plantations on the soil fungal communities is still unknown. We assessed the changes in diversity, species composition and ecological guilds of the soil fungal communities across tree ages of Eucalyptus grandis plantations by DNA metabarcoding of ITS2 amplicons. Changes in soil fungal species composition, diversity and ecological guilds were related to stand age but also to fertility changes. The relative abundance of saprotrophs and pathogens were negatively correlated with stand age, and positively with soil fertility. In contrast, the relative abundance and diversity of ectomycorrhizal species were higher in older, less fertile stands, including well-known cosmopolitan species but also species associated with Eucalyptus, such as Scleroderma albidum and Descomyces albellus. We show that soil fungal community changes are linked to progressive soil colonization by tree roots but are also related to soil fertility changes.     

Urban mycorrhizas: predicting arbuscular mycorrhizal abundance in green roofs

Mycorrhizas face unique anthropogenic stressors in urban environments, but the factors influencing their abundance in cities remains comparatively unstudied. Using green roofs as a model system, we built a conceptual model outlining the biotic and abiotic factors influencing arbuscular mycorrhizal (AM) fungal abundance in cities. We then tested this model and its multiple causal hypotheses with structural equation modeling using plant, soil, and AM fungal abundance measurements from 60 plots across 12 green roofs in Chicago, USA. The best direct predictor of AM fungal abundance was not plant cover, plant richness, or soil nutrients, but instead green roof age, suggesting temporal accumulation of AM fungal propagules in degraded urban environments. Soil P had the strongest total effect on AM fungal abundance both directly and via indirect promotion of plant cover. This study highlights knowledge gaps and challenges to studying the urban ecology of AM fungi.     

Soil Fungal Diversity and Community Composition in Response to Continuous Sweet Potato Cropping Practices

Soil fungi are extremely important for maintaining soil health and plant production in agricultural systems. Currently, the effect of continuous cropping of sweet potato on soil fungal communities and physiochemical parameters has not been well documented. In the present study, four sweet potato fields consecutively monocultured for 1, 2, 3, and 4 years were selected to investigate the effect of monoculture on soil fungal communities through Illumina MiSeq sequencing. Continuous cropping of sweet potatoes dramatically altered the fungal community composition, whereas fungal diversity was almost unchanged. Ascomycota and Basidiomycota were the most abundant phyla in all soil samples, accounting for 32.59% and 21.14% of the average relative abundance, respectively. The abundance of some potential pathogens, such as Ascobolus spp, specifically Ascobolus stercorarius, and some unknown fungi increased significantly as the sweet potato monoculture period increased, and their presence were highly positively correlated with disease incidence. In contrast, Basidiomycota, Bullera, Fusarium and Trichocladium most likely play roles as antagonists of sweet potato disease development, as their relative abundance decreased significantly over time and were negatively correlated with disease incidence. Redundancy and correlation analyses revealed that soil pH and organic carbon content were the most important factors driving these changes. Our findings provided a dynamic overview of the fungal community and presented a clear scope for screening beneficial fungi and pathogens of sweet potato.     

健康与凋萎病杨梅树体及根围菌群的差异

凋萎病是制约杨梅产业发展的严重病害。为了有效防控凋萎病,本研究分析了杨梅健康和感染凋萎病树体各部位及根表土和根围土中细菌和真菌群落的丰富度与多样性的差异。结果表明: 与健康树相比,病树根围土、根表土、根、枝干、枝皮和叶片的细菌和真菌丰富度均发生了显著变化,其中,根表土细菌和枝皮内真菌的丰富度和多样性均显著降低,而枝皮内细菌和根表土的真菌丰富度和多样性均显著升高。病树各部位及根表、根围土细菌和真菌的优势菌相对丰度在门、纲和属水平上发生了明显的变化,在病树枝干、根和根表土中的假单胞菌属及根表土、根围土中的镰刀菌属的相对丰度明显降低,病树根表土及根围土中青霉菌属的相对丰度明显增加。与凋萎病菌同属的拟盘多毛孢菌在病树根内显著减少,而在其他位置均大量增殖,其相对丰度与多数相对丰度较高的真菌呈正相关。本研究结果将为开发杨梅凋萎病的生态改良、培育健康树体和生物防治技术提供有效的理论依据。     

Predator diversity strengthens trophic cascades in kelp forests by modifying herbivore behaviour

Although human-mediated extinctions disproportionately affect higher trophic levels, the ecosystem consequences of declining diversity are best known for plants and herbivores. We combined field surveys and experimental manipulations to examine the consequences of changing predator diversity for trophic cascades in kelp forests. In field surveys we found that predator diversity was negatively correlated with herbivore abundance and positively correlated with kelp abundance. To assess whether this relationship was causal, we manipulated predator richness in kelp mesocosms, and found that decreasing predator richness increased herbivore grazing, leading to a decrease in the biomass of the giant kelp Macrocystis. The presence of different predators caused different herbivores to alter their behaviour by reducing grazing, such that total grazing was lowest at highest predator diversity. Our results suggest that declining predator diversity can have cascading effects on community structure by reducing the abundance of key habitat-providing species.