Development of a colorimetric colony‐screening assay for detection of defluorination by micro‐organisms

Aims: To develop a colorimetric colony‐screening assay to facilitate the isolation of micro‐organisms capable of defluorination. Methods and Results: A metal‐dye chelate, zirconium‐xylenol orange was used to detect fluoride ions released from a fluorinated substrate through microbial metabolism. Depolymerised zirconium reagent gave the greatest visual contrast for the presence of fluoride compared to more polymerised forms of zirconium reagent. The sensitivity of the assay was greatest when the molar ratio of depolymerised zirconium to xylenol orange was 1 : 2. Using depolymerised zirconium and xylenol orange (150 and 300 nmol l^?1 respectively), the assay could detect a fluoride application spot (5 mmol l^?1) containing 50 nmoles of fluoride ions. Most media constituents were well tolerated by the assay, although phosphate ions needed to be restricted to 0·1 g l^?1 and some proteins digest to between 1 and 5 g l^?1. A microbial enrichment culture growing on solidified medium containing 20 mmol l^?1 fluoroacetate was screened using the assay, and defluorinating bacteria belonging to the genus Burkholderia isolated. Conclusions: A method was developed that is sensitive, rapid and reliable for detecting defluorination by micro‐organisms growing on solidified medium. Significance and Impact of the Study: This method can be used to facilitate the isolation of micro‐organisms capable of defluorination.     

Effects of historical forest contraction on the phylogeographic structure of Australo‐Papuan populations of the red‐legged pademelon (Macropodidae: Thylogale stigmatica)

Geographic patterns of genetic variation are strongly influenced by historical changes in species habitats. Whether such patterns are common to co‐distributed taxa may depend on the extent to which species vary in ecology and vagility. We investigated whether broad‐scale phylogeographic patterns common to a number of small‐bodied vertebrate and invertebrate species in eastern Australian forests were reflected in the population genetic structure of an Australo‐Papuan forest marsupial, the red‐legged pademelon (Macropodidae: Thylogale stigmatica). Strong genetic structuring of mtDNA haplotypes indicated the persistence of T. stigmatica populations across eastern Australia and southern New Guinea in Pleistocene refugial areas consistent with those inferred from studies of smaller, poorly dispersing species. However, there was limited divergence of haplotypes across two known historical barriers in the northeastern Wet Tropics (Black Mountain Barrier) and coastal mideastern Queensland (Burdekin Gap) regions. Lack of divergence across these barriers may reflect post‐glacial recolonization of forests from a large, central refugium in the Wet Tropics. Additionally, genetic structure is not consistent with the present delimitation of subspecies T. s. wilcoxi and T. s. stigmatica across the Burdekin Gap. Instead, the genetic division occurs further to the south in mideastern Queensland. Thus, while larger‐bodied marsupials such as T. stigmatica did persist in Pleistocene refugia common to a number of other forest‐restricted species, species‐specific local extinction and recolonization events have resulted in cryptic patterns of genetic variation. Our study demonstrates the importance of understanding individualistic responses to historical climate change in order to adequately conserve genetic diversity and the evolutionary potential of species.     

Broad‐scale patterns in smoke‐responsive germination from the south‐eastern Australian flora

Questions

Fire is a crucial component of many ecosystems. Plants whose seeds germinate in response to smoke may benefit from resource availability in the post‐fire environment. Smoke can influence germination timing and success, as well as seedling vigour, resulting in burgeoning research interest in smoke‐responsive germination. Research in this field has largely focused on four key ‘Mediterranean‐type’ fire‐prone ecosystems: the Mediterranean Basin, South African fynbos, Californian chaparral and Western Australia. There are far fewer studies from south‐eastern Australia, a fire‐prone but not “Mediterranean‐type” region. How does smoke‐responsive germination in this region vary according to ecological, phylogenetic, and methodological variables?

Location

South‐eastern Australia.

Methods

We investigated patterns of smoke‐promoted germination in south‐eastern Australian plants across habitat types, growth forms, fire response strategies, phylogeny, taxonomic levels and smoke application methods. We compiled and interrogated data comprising 303 entries on germination responses to smoke in 233 south‐eastern Australian plant species, from 33 different sources.

Results

Smoke‐responsive germination occurs at a lower rate (~41% of tested species) in south‐eastern Australian flora than it does in fynbos and Western Australian floras, and there is clear patterning within these data. Obligate‐seeding species were more likely to respond, Leguminosae and Rubiaceae were less likely to respond (although we question the generality of these results), while Poaceae were more likely to respond to smoke. Finally, studies using aerosol smoke and studies conducted in situ were most likely to find smoke‐promoted germination.

Conclusions

Obligate seeders and Poaceae may be selected for in habitats with higher fire frequencies, consistent with literature suggesting that short inter‐fire intervals favour grasslands over forests. These findings may be particular to south‐eastern Australia, or more widely applicable; more broad‐scale comparative research will reveal the answer. By synthesizing the south‐eastern Australian smoke germination literature we broaden our understanding beyond the better‐studied Mediterranean‐type floras.

     

Biogeographic barriers in south‐eastern Australia drive phylogeographic divergence in the garden skink,Lampropholis guichenoti

Aim To investigate the impact of climatic oscillations and recognized biogeographic barriers on the evolutionary history of the garden skink (Lampropholis guichenoti), a common and widespread vertebrate in south‐eastern Australia. Location South‐eastern Australia. Methods Sequence data were obtained from the ND4 mitochondrial gene for 123 individuals from 64 populations across the entire distribution of the garden skink. A range of phylogenetic (maximum likelihood, Bayesian) and phylogeographic analyses (genetic diversity, Tajima’s D, Φ_ST, mismatch distribution) were conducted to examine the evolutionary history and diversification of the garden skink. Results A deep phylogeographic break (c. 14%), estimated to have occurred in the mid–late Miocene, was found between ‘northern’ and ‘southern’ populations across the Hunter Valley in northern New South Wales. Divergences among the geographically structured clades within the ‘northern’ (five clades) and ‘southern’ (seven clades) lineages occurred during the Pliocene, with the location of the major breaks corresponding to the recognized biogeographic barriers in south‐eastern Australia. Main conclusions Climatic fluctuations and the presence of several elevational and habitat barriers in south‐eastern Australia appear to be responsible for the diversification of the garden skink over the last 10 Myr. Further molecular and morphological work will be required to determine whether the two genetic lineages represent distinct species.     

Lethal 1080 baiting continues to reduce European Red Fox (Vulpes vulpes) abundance after more than 25 years of continuous use in south‐west Western Australia

European Red Fox (Vulpes vulpes) baiting with 1080 poison (sodium fluoroacetate) is undertaken in many Australian sites to reduce fox abundance and to protect vulnerable native species from predation. The longest continuous use of fox baiting for fauna conservation commenced in south‐west Western Australia in the 1980s and includes baiting Dryandra Woodland and Tutanning Nature Reserve. The trap success of the Woylie (Bettongia penicillata) in these two reserves initially increased more than 20‐fold after the commencement of baiting and was maintained until 2000. Woylie captures then decreased rapidly, despite ongoing fox baiting, so the long‐term efficacy of 1080 baiting was questioned. Here, fox density and probabilities of detection, re‐detection and survival between replicated baited and unbaited sites were compared by modelling capture–recapture of individual foxes. These were identified from microsatellite DNA genotypes obtained non‐invasively from hair, scat and saliva samples. The frequency and duration of fox residencies were also quantified. Remote cameras were used to determine the fate of baits but uptake by foxes was low, whereas nontarget species' bait uptake was high. Nevertheless, foxes inhabiting baited reserves had significantly higher mortality, shorter residency times, and 80% lower density than foxes inhabiting unbaited reserves. Baiting continues to significantly reduce fox abundance after more than 25 years of continuous use. This has positive implications for fox control programmes throughout Australia but reduced fox abundance may facilitate increased predation by feral Cats (Felis catus).     

Phylogeography of the world's tallest angiosperm, Eucalyptus regnans: evidence for multiple isolated Quaternary refugia

Aim There is a need for more Southern Hemisphere phylogeography studies, particularly in Australia, where, unlike much of Europe and North America, ice sheet cover was not extensive during the Last Glacial Maximum (LGM). This study examines the phylogeography of the south‐east Australian montane tree species Eucalyptus regnans. The work aimed to identify any major evolutionary divergences or disjunctions across the species’ range and to examine genetic signatures of past range contraction and expansion events. Location South‐eastern mainland Australia and the large island of Tasmania. Methods We determined the chloroplast DNA haplotypes of 410 E. regnans individuals (41 locations) based on five chloroplast microsatellites. Genetic structure was examined using analysis of molecular variance (AMOVA), and a statistical parsimony tree was constructed showing the number of nucleotide differences between haplotypes. Geographic structure in population genetic diversity was examined with the calculation of diversity parameters for the mainland and Tasmania, and for 10 regions. Regional analysis was conducted to test hypotheses that some areas within the species’ current distribution were refugia during the LGM and that other areas have been recolonized by E. regnans since the LGM. Results Among the 410 E. regnans individuals analysed, 31 haplotypes were identified. The statistical parsimony tree shows that haplotypes divided into two distinct groups corresponding to mainland Australia and Tasmania. The distribution of haplotypes across the range of E. regnans shows strong geographic patterns, with many populations and even certain regions in which a particular haplotype is fixed. Many locations had unique haplotypes, particularly those in East Gippsland in south‐eastern mainland Australia, north‐eastern Tasmania and south‐eastern Tasmania. Higher haplotype diversity was found in putative refugia, and lower haplotype diversity in areas likely to have been recolonized since the LGM. Main conclusions The data are consistent with the long‐term persistence of E. regnans in many regions and the recent recolonization of other regions, such as the Central Highlands of south‐eastern mainland Australia. This suggests that, in spite of the narrow ecological tolerances of the species and the harsh environmental conditions during the LGM, E. regnans was able to persist locally or contracted to many near‐coastal refugia, maintaining a diverse genetic structure.     

Metabolism and defluorination of fluoroacetate in the brush-tailed possum (Trichosurus vulpecula).

The brush-tailed possum (T. vulpecula) from Western Australia was found to be nearly 150 times more resistant to fluoroacetate intoxication in vivo than the same species from South Australia. Acetone powder preparations from the liver of animals from both populations showed similar abilities to convert fluoroacetate into fluorocitrate. Aconitate hydratase activity in liver preparations from both Western Australian and South Australian animals was similarly and competitively inhibited by fluorocitrate. Both animals were capable of defluorinating fluoroacetate at similar rates by a glutathione-dependent enzymic mechanism resulting in the formation of free fluoride ion and S-carboxymethylcysteine. Glutathione was also capable of partial protection against the toxic effects of fluoroacetate in vitro by a further unelucidated mechanism.     

Spangled perch (Leiopotherapon unicolor) in the southern Murray‐Darling Basin: Flood dispersal and short‐term persistence outside its core range

The spangled perch Leiopotherapon unicolor is considered a rare vagrant in the southern Murray‐Darling Basin, Australia, due to its intolerance of the relatively cool water temperatures that prevail during winter months. This study details 1342 records of the species from 68 locations between 2010 and 2014 outside its accepted ‘core adult range’ following widespread flooding during 2010 and 2011. Although records of the species declined over 2013, L. unicolor remained resident in the southern Murray‐Darling Basin as of April 2014. The species persisted in several locations for three consecutive winters with recruitment documented at two sites. This study represents the first identification of the dispersal of large numbers of L. unicolor into the southern Murray‐Darling Basin, persistence beyond a single winter, and recruitment by the species in habitats south of its recognized ‘core adult range’. Targeted research would determine the potential for predicted environmental changes (artificially warmer drainage wetlands, climate change and greater floodplain connectivity) to facilitate longer term persistence and range expansion by the species in the southern Murray‐Darling Basin.     

Plio‐Pleistocene diversification and genetic population structure of an endangered lizard (the Blue Mountains water skink,Eulamprus leuraensis) in south‐eastern Australia

Aim Although climatic fluctuations occurred world‐wide during the Pleistocene, the severity of glacial and drought events – and hence their influence on animal and plant biogeography – differed among regions. Many Holarctic species were forced to warmer‐climate refugia during glacial periods, leaving the genetic signature of recent expansion and gene flow among modern‐day populations. Montane south‐eastern Australia experienced less extreme glaciation, but the effects of drier and colder climatic conditions over this period on biotic distributions, and hence on the present‐day genetic structure of animal and plant populations, are poorly known. Location South‐eastern Australia. Methods The endangered Blue Mountains water skink (Eulamprus leuraensis) is a viviparous lizard known from fewer than 40 isolated small swamps at 560–1060 m elevation in south‐eastern Australia. We conducted molecular phylogenetic, dating and population genetics analyses using the mitochondrial NADH dehydrogenase 4 (ND4) of 224 individuals of E. leuraensis sampled across the species’ distribution. Results Ancient divergences in haplotype groups between lizards from the Blue Mountains and the Newnes Plateau, and strong genetic differences, even between swamps separated by only a few kilometres, suggest that the species has persisted as a series of relatively isolated populations within its current distribution for about a million years. Presumably, habitat patches similar to current‐day swamps persisted throughout glacial–interglacial cycles in this region, allowing the development of high levels of genetic structuring within and among present‐day populations. Main conclusions Our results suggest that less extreme glacial conditions occurred in the Southern Hemisphere compared with the Northern Hemisphere, allowing cold‐adapted species (such as E. leuraensis) to persist in montane areas. However, additional studies are needed before we can assemble a comprehensive view of the impact of Pleistocene climatic variation on the phylogeography of Southern Hemisphere taxa.     

Fox‐baiting in agricultural landscapes in south‐eastern Australia: a case‐study appraisal and suggestions for improvement

Summary In south‐eastern Australia, the introduced Red Fox (Vulpes vulpes) is a major predator of native wildlife and livestock. Fox control in agricultural landscapes is heavily reliant on the laying of poisoned baits by private landholders, yet there have been few assessments of the application or success of landholder‐baiting practices. We evaluated a community‐based fox‐baiting campaign, typical of programs employed throughout the agricultural regions of south‐eastern Australia to control foxes. We recorded the spatial coverage of 1080 baits deployed by landholders, assessed baiting procedures, monitored the survival of six radio‐collared foxes during and after baiting, and compared the spatial coverage and likely effectiveness of the baiting program with two alternative (theoretical) baiting strategies. Relative to other baiting programs, coordination among neighbours was reasonably high, with 37.5% of baited properties (n = 40) adjoining ≥3 neighbouring properties that also contained baits. Nevertheless, the maximum distance from the centre of a baited property to the nearest edge of an unbaited property was <750 m (mean = 380 m ± 147 m SD). On average, 33% (±17% SD) of each fox’s home range overlapped with baited properties, but only two foxes died during the baiting program. The remaining four foxes were still alive 10 weeks after baiting ceased. Modelling of simulated fox home ranges showed that 13.5% contained no bait stations based on the community baiting program, whereas alternative roadside‐ and grid‐baiting strategies (theoretically) delivered baits to all simulated home ranges. Some landholders employed practices that could reduce the effectiveness of baiting programs such as not removing decayed baits before deploying new ones or placing bait stations too close together. Our research illustrates the difficulties of managing a coordinated baiting program on private land that effectively controls foxes. Alternative baiting strategies such as roadside baiting need to be considered to improve fox control in agricultural landscapes.     

Factors influencing the occurrence of the Southern Long‐nosed Bandicoot (Perameles nasuta Geoffroy) during a population irruption and decline

Modelling the occupancy of species is a key part of the discipline of ecology, with particular efforts often focused on identifying which environmental, vegetation and other factors influence why a given species occurs where it does. Here, based on data gathered between 2003 and 2016, we developed models of the environmental, terrain and vegetation factors associated with site occupancy of the Southern Long‐nosed Bandicoot (Perameles nasuta Geoffroy) at Booderee National Park in the Jervis Bay Territory, south‐eastern Australia. The Long‐nosed Bandicoot is a nocturnal omnivorous marsupial which feeds primarily on subterranean invertebrates and fungi. The species has undergone a major reduction in abundance and site occupancy following a peak irruption in 2006 with the percentage of the sites at which the species was present declining from 74.3% of sites trapped in 2006 to 10.5% of sites trapped in 2016. We found the Long‐nosed Bandicoot was distributed widely across Booderee National Park and occurred in all six broad vegetation types in the reserve (forest, heathland, woodland, shrubland, sedgeland and rainforest). Detection‐occupancy modelling revealed that the persistence and colonisation of sites by the species were negatively associated with the per cent cover of leaf litter, irrespective of broad vegetation type. Occupancy models are an important tool in identifying parts of landscapes most likely to support populations of particular species, such as the Long‐nosed Bandicoot over time, and they may assist management of protected areas to prioritise resources to manage the habitat of those areas.     

Climate‐driven shifts in the distribution of koala‐browse species from the Last Interglacial to the near future

The koala's Phascolarctos cinereus distribution is currently restricted to eastern and south‐eastern Australia. However, fossil records dating from 70 ± 4 ka (ka = 10³ yr) from south‐western Australia and the Nullarbor Plain are evidence of subpopulation extinctions in the southwest at least after the Last Interglacial (~128–116 ka). We hypothesize that koala sub‐population extinctions resulted from the eastward retraction of the koala's main browse species in response to unsuitable climatic conditions. We further posit a general reduction in the distribution of main koala‐browse trees in the near future in response climate change. We modelled 60 koala‐browse species and constructed a set of correlative species distribution models for five time periods: Last Interglacial (~128–116 ka), Last Glacial Maximum (~23–19 ka), Mid‐Holocene (~7–5 ka), present (interpolations of observed data, representative of 1960–1990), and 2070. We based our projections on five hindcasts and one forecast of climatic variables extracted from WorldClim based on two general circulation models (considering the most pessimistic scenario of high greenhouse‐gas emissions) and topsoil clay fraction. We used 17 dates of koala fossil specimens identified as reliable from 70 (± 4) to 535 (± 49) ka, with the last appearance of koalas at 70 ka in the southwest. The main simulated koala‐browse species were at their greatest modelled extent of suitability during the Last Glacial Maximum, with the greatest loss of koala habitat occurring between the Mid‐Holocene and the present. We predict a similar habitat loss between the present and 2070. The spatial patterns of habitat change support our hypothesis that koala extinctions in the southwest, Nullarbor Plain and central South Australia resulted from the eastward retraction of the dominant koala‐browse species in response to long‐term climate changes. Future climate patterns will likely increase the extinction risk of koalas in their remaining eastern ranges.     

Differences in leaf‐litter invertebrate assemblages between radiata pine plantations and neighbouring native eucalypt woodland

Abstract We investigated the structure, composition and environmental correlates of leaf‐litter invertebrate assemblages in Pinus radiata plantations and in neighbouring native eucalypt woodland in the Jenolan Caves Karst Conservation Reserve, south‐east Australia. Invertebrate assemblages of plantations were compared with remnant eucalypt woodland located well away from the influence of plantations to determine the direct effects of plantations as a result of habitat‐replacement with a non‐native plantation species. We also included in our comparisons edge habitat of eucalypt woodland located immediately adjacent to plantations. This unique edge habitat is exposed to the intrusion of large volumes of pine leaf‐litter from plantations, which has the potential to affect indirectly invertebrate assemblages of surrounding woodland. We found that species richness of invertebrates was significantly lower in pine plantations compared with remnant eucalypt woodland. There was a complete absence of species from 12 invertebrate orders that were found in surrounding eucalypt woodland. A rich and abundant native plant understorey that provides increased habitat heterogeneity is the most likely explanation for the richer invertebrate assemblage found in remnant eucalypt woodland. The total abundance of all invertebrate taxa in pine plantations in winter was significantly higher than in remnant eucalypt woodland, pine‐litter edges and pine‐free edges. Plantations were characterized by particularly high abundances of species in two orders, Acari and Collembola. High abundances of acarine and collembolan species in plantations were associated with a decompositional environment represented by comparatively higher moisture contents and higher C : N ratios of both leaf‐litter and soil, higher soil conductivity and lower soil pH. We suggest that implementation of The Plantation Biodiversity Benefits Score will be a fruitful way forward to assess the environmental benefits that can be gained from pine plantations in this region of south‐eastern Australia.     

Low levels of genetic structuring in King George whiting Sillaginodes punctatus across two geographic regions

Postlarvae of King George whiting Sillaginodes punctatus, a commercially important fish species in southern Australia, were collected from multiple locations across south and south‐eastern Australia. Genetic analyses using seven microsatellite markers found little evidence of genetic structure suggesting high levels of connectivity between the regions. The results found no evidence of a distinct source spawning population within the south‐eastern range sampled in this study.     

Nestedness in fragmented landscapes: a case study on birds, arboreal marsupials and lizards

Aim The potential nestedness of assemblages of birds, arboreal marsupials and lizards was examined in a fragmented landscape in south‐eastern Australia. We assessed which ecological processes were related to the presence or absence of nestedness, particularly in relation to previous autoecological studies in the same study area. Location Data were collected at Buccleuch State Forest, c. 100 km to the west of the Australian Capital Territory in south‐eastern Australia. Methods Presence/absence matrices were compiled for birds (40 pine sites, 40 continuous forest sites, 43 fragments), arboreal marsupials (41 continuous forest sites, 39 fragments) and lizards (30 sites including all landscape elements) from a range of field surveys conducted since 1995. Nestedness was analysed using a standardized discrepancy measure, and statistical significance was assessed using the RANDNEST null model. For birds, species thought to be extinction‐prone were analysed separately to assess if assemblages comprising extinction‐prone species were more strongly nested than others. Also, sites with a substantial amount of Eucalyptus radiata were analysed separately to assess whether nestedness was stronger if environmental heterogeneity was minimized. Results The assemblages of lizards and arboreal marsupials were not nested, probably because of qualitative differences between species in response to environmental conditions. The assemblages of birds in fragments and pine sites were significantly nested, but nestedness was substantially stronger in fragments. For birds, nestedness appeared to be related to somewhat predictable extinction sequences, although there were many outliers in the analysis. Nestedness increased when extinction‐prone species were analysed by themselves. Nestedness decreased when environmental heterogeneity was minimized by including only sites dominated by E. radiata. Main conclusions In a given landscape, different vertebrate assemblages can respond in vastly different ways to fragmentation. Nestedness analyses can provide a useful overview of likely conservation issues in fragmented landscapes, for example by highlighting the possible roles of local extinction and immigration. However, nestedness analyses are a community‐level tool, and should be complemented by more detailed autoecological studies when applied in a conservation context.     

More long‐unburnt forest will benefit mammals in Australian sub‐alpine forests and woodlands

The composition of mammalian communities in Australia's Eucalyptus forests and woodlands is known to be affected by fire. However, there are few published studies that compare mammal assemblages in recently burnt and long‐unburnt forests because there are few areas with long‐term fire history data. Understanding the value of long‐unburnt forest is important because it is becoming rare in fire‐prone regions of the world, such as south‐eastern Australia, partly because of the widespread use of prescribed burning. We deployed wildlife cameras for 28 trap‐nights at each of 81 sites that ranged from 0.5 to at least 96 years since the last fire. We recorded a total of 15 native mammal species. At least one mammal species was recorded at 80 of the 81 sites. Significantly more species were detected at long‐unburnt sites (>96 years since fire) than sites 0.5–12 years since the last fire. Species composition varied significantly between sites 0.5–12 years and >96 years since the last fire but did not vary between sites 0.5–2 years and 6–12 years since the last fire. Although there was not one category of time since fire (i.e. 0.5–2 years, 6–12 years and >96 years) in which all 15 native mammal species were recorded, long‐unburnt sites were significantly more important for the occurrence of seven mammal species; intermediate and recently burnt sites were significantly more important for one species. Our results suggested that, while a diversity of fire ages is important for conserving mammalian diversity, long‐unburnt forests and woodlands (which comprised only 8% of our study area) are disproportionately important for mammal conservation. Our results add to a growing body of the literature from south‐eastern Australia, suggesting that remaining long‐unburnt forest should be afforded protection from fire and more forest should be transitioned to long unburnt.     

Daily age determination and growth rates of freshwater fish throughout a regulated lotic system of the Murray‐Darling Basin Australia

To facilitate future research in freshwater fish recruitment response to environmental flow delivery, size‐at‐age and growth models are presented for eight fish species occurring in south‐eastern Australia; three small‐bodied species and the juvenile 0+ age classes of five large‐bodied species. Otolith increments were used to estimate the daily age of golden perch Macquaria ambigua, bony bream Nematalosa erebi, common carp Cyprinus carpio; Murray cod Maccullochella peelii, freshwater eel‐tailed catfish Tandanus tandanus, Australian smelt Retropinna semoni, un‐specked hardyhead Craterocephalus stercusmuscarum fulvus and Murray–Darling rainbowfish Melanotaenia fluviatilis. Linear growth models provided the best fit for length‐at‐age data of juvenile 0+ age large‐bodied species; whereas von Bertalanffy growth functions provided the best fit to length‐at‐age data of small‐bodied species. The results provide novel baseline data for future research in this area.     

Long‐term declines in multiple waterbird species in a tidal embayment,south‐east Australia

Worldwide, local extinctions and severe declines in waterbird densities are being reported from many important waterbird sites. Waterbird sites often exist as a network, collectively providing crucial habitat for different life history stages of different species. Therefore, population changes at one site may strongly influence others. In Australia, many waterbird species are highly mobile, and move rapidly over long distances in response to rainfall. Large tidal wetlands often serve as drought refugia or alternative breeding habitat for these species. These sites are also the migration terminus of many species of shorebirds that spend their non‐breeding season in Australia. One such site in south‐eastern Australia is Western Port, a Ramsar‐listed tidal embayment forming part of the East Asian–Australasian Shorebird Site Network. We measured waterbird population trends over nearly 40 years in Western Port to see whether changes showed consistent trends over time across multiple species. Thirty‐nine species were recorded often enough to allow an analysis of trends over time using dynamic linear models and, where appropriate, piecewise linear regression. Twenty‐two species had declined, including four species of duck, five species of fish‐eating bird (cormorants, terns and pelicans), one species each of grebe, gull and heron, and 10 species of shorebird. Only two species (Australian pied oystercatcher Haematopus longirostris and straw‐necked ibis Threskiornis spinicollis) increased significantly over the same time period. Patterns of decline in non‐migratory waterbirds may reflect diminishing wetland availability, local reductions in fish prey, increased predation pressure and changes in inland wetland resources. Declines in migratory shorebirds are most likely related to loss of habitat elsewhere in their trans‐equatorial migration routes. These trends in waterbirds that use Western Port reflect widespread impacts on populations elsewhere in Australia and overseas, necessitating more than simply local management of this tidal embayment.     

Poisoning for production: how effective is fox baiting in south‐eastern Australia?

• 1 The European red fox Vulpes vulpes represents a continuing threat to both livestock and native vertebrates in Australia, and is commonly managed by setting ground‐level baits impregnated with 1080 (sodium fluoroacetate) poison. However, the long‐term effectiveness of such control campaigns is likely to be limited due to the ability of foxes to disperse over considerable distances and to swiftly recolonize areas from where they had been removed.
• 2 To investigate the effectiveness of fox baiting in a production landscape, we assessed the potential for foxes to reinvade baited farm property areas within the jurisdiction of the Molong Rural Lands Protection Board (RLPB), an area of 815 000 ha on the central tablelands of New South Wales, Australia. The spatial distribution and timing of fox baiting campaigns between 1998 and 2002 was estimated from RLPB records and mapped using Geographical Information System software. The effectiveness of the control campaign was assessed on the basis of the likely immigration of foxes from non‐baited farms using immigration distances calculated from published relationships between dispersal distance and home range size.
• 3 Few landholders undertook baiting campaigns in any given year, and the area baited was always so small that no baited property would have been sufficiently far from an unbaited property to have been immune from immigrating individuals. It is likely, therefore, that immigration onto farms negated any long‐term effects of baiting operations. This study highlights some of the key deficiencies in current baiting practices in south‐eastern Australia and suggests that pest management programmes should be monitored using such methods to ensure they achieve their goals.

     

Gene flow of the canker pathogen Botryosphaeria australis between Eucalyptus globulus plantations and native eucalypt forests in Western Australia

Abstract The eucalypt plantation industry in Western Australia provides a unique opportunity to study the movement of pathogens between closely related host taxa. Eucalyptus globulus, a native to Tasmania and south‐eastern Australia, is the predominant species in Western Australian plantations, often being planted adjacent to native forest containing Eucalyptus marginata and Eucalyptus diversicolor. Since the commencement of the plantation industry 20 years ago, several fungal species, previously known only to eastern Australia or overseas, have been reported on E. globulus in Western Australia. Botryosphaeria australis is a newly described species, recently found causing cankers on Acacia spp. in eastern Australia. However, during a routine survey, B. australis was found to be the predominant species associated with E. globulus plantations and native Eucalyptus spp. in Western Australia. In this study, six short simple repeat markers were used to evaluate genetic diversity and gene flow between collections of B. australis from native eucalypt forest and E. globulus plantations at two locations in south‐western Australia. In both cases, there was no restriction to gene flow between the plantations and the adjacent native forest. Botryosphaeria australis has now been isolated from a wide range of hosts across south‐western Australia and was not isolated from E. globulus in Tasmania or South Australia. This extensive distribution and host range suggests B. australis is native to Western Australia. This study demonstrates the ability of a pathogen to move between plantation and forests.