Place prioritization for biodiversity conservation using probabilistic surrogate distribution data

We analyse optimal and heuristic place prioritization algorithms for biodiversity conservation area network design which can use probabilistic data on the distribution of surrogates for biodiversity. We show how an Expected Surrogate Set Covering Problem (ESSCP) and a Maximal Expected Surrogate Covering Problem (MESCP) can be linearized for computationally efficient solution. For the ESSCP, we study the performance of two optimization software packages (XPRESS and CPLEX) and five heuristic algorithms based on traditional measures of complementarity and rarity as well as the Shannon and Simpson indices of α‐diversity which are being used in this context for the first time. On small artificial data sets the optimal place prioritization algorithms often produced more economical solutions than the heuristic algorithms, though not always ones guaranteed to be optimal. However, with large data sets, the optimal algorithms often required long computation times and produced no better results than heuristic ones. Thus there is generally little reason to prefer optimal to heuristic algorithms with probabilistic data sets.     

A new method for conservation planning for the persistence of multiple species

Although the aim of conservation planning is the persistence of biodiversity, current methods trade-off ecological realism at a species level in favour of including multiple species and landscape features. For conservation planning to be relevant, the impact of landscape configuration on population processes and the viability of species needs to be considered. We present a novel method for selecting reserve systems that maximize persistence across multiple species, subject to a conservation budget. We use a spatially explicit metapopulation model to estimate extinction risk, a function of the ecology of the species and the amount, quality and configuration of habitat. We compare our new method with more traditional, area-based reserve selection methods, using a ten-species case study, and find that the expected loss of species is reduced 20-fold. Unlike previous methods, we avoid designating arbitrary weightings between reserve size and configuration; rather, our method is based on population processes and is grounded in ecological theory.     

Measuring progress in US endangered species conservation

Since passage of the Endangered Species Act in 1973, over 1300 endangered and threatened species have been protected in the USA and its territories. Most species continue to face a significant risk of extinction, but the status of many species is improving. Here we present analyses of federal agency reports to the United States Congress (1988–2002) that describe differences in species status and show which variables are correlated with improving or declining status. We found that 52% of species showed repeated improvements or were not declining over this time. Species status improves over time, with only 35% still declining 13 years or more after protection. Taxonomy, funding by US Fish and Wildlife Service and National Oceanic and Atmospheric Administration, and agency assessment of risk of extinction and potential to recover were significantly correlated with status.     

DNA分子标记技术在濒危物种保护中的应用

近20年来,随着分子生物学技术的迅猛发展,涌现出一批高效、可靠的DNA分子标记技术.本文论述了限制性片段长度多态性、微卫星DNA、随机扩增多态性DNA、扩增片段长度多态性等DNA分子标记技术的基本原理及技术特点;同时,介绍了DNA分子标记在濒危物种种群遗传学研究、致危因素分析及保护策略的制定等保护生物学方面的应用.     

Predicting species distributions for conservation decisions

Species distribution models (SDMs) are increasingly proposed to support conservation decision making. However, evidence of SDMs supporting solutions for on‐ground conservation problems is still scarce in the scientific literature. Here, we show that successful examples exist but are still largely hidden in the grey literature, and thus less accessible for analysis and learning. Furthermore, the decision framework within which SDMs are used is rarely made explicit. Using case studies from biological invasions, identification of critical habitats, reserve selection and translocation of endangered species, we propose that SDMs may be tailored to suit a range of decision‐making contexts when used within a structured and transparent decision‐making process. To construct appropriate SDMs to more effectively guide conservation actions, modellers need to better understand the decision process, and decision makers need to provide feedback to modellers regarding the actual use of SDMs to support conservation decisions. This could be facilitated by individuals or institutions playing the role of ‘translators’ between modellers and decision makers. We encourage species distribution modellers to get involved in real decision‐making processes that will benefit from their technical input; this strategy has the potential to better bridge theory and practice, and contribute to improve both scientific knowledge and conservation outcomes.     

Assessing the mechanisms behind successful surrogates for biodiversity in conservation planning

Limited by the availability of data, conservation planners must use surrogates for biodiversity when selecting conservation areas. Although several methods have been proposed for selecting surrogates, no clear set of species attributes have been described that allow for the efficient a priori selection of surrogate groups. We used a database of 1449 species in two regions of the United States to (1) examine the consistency in the performance of simple taxonomic-based surrogates of biodiversity and (2) test five hypotheses proposed to explain surrogate performance. First, we compared the ability of sites selected to protect members of seven surrogate groups to protect non-surrogate species in the north-western United States and in the Middle-Atlantic region of the eastern United States. Then, in a separate analysis, we tested whether surrogate performance could be explained by (1) taxonomic diversity; (2) nested species distributions; (3) hotspots of biodiversity; (4) species range sizes; (5) environmental diversity. Our first analysis revealed little consistency in the performance of surrogates in the two different study regions. For example, butterflies provided protection for 76% of all other species in the north-western United States but only 56% of all other species in the eastern United States. Our second analysis revealed only weak associations between species characteristics and surrogate performance. Furthermore, these associations proved inadequate for selecting successful surrogates across study regions. Overall, our results suggest that in lieu of searching for optimal surrogate groups, research efforts will be better spent by developing alternative methods for assessing conservation value in areas where data on species distributions are limited.     

Historical bird and terrestrial mammal extinction rates and causes

Aim Conservation of species is an ongoing concern. Location Worldwide. Methods We examined historical extinction rates for birds and mammals and contrasted island and continental extinctions. Australia was included as an island because of its isolation. Results Only six continental birds and three continental mammals were recorded in standard databases as going extinct since 1500 compared to 123 bird species and 58 mammal species on islands. Of the extinctions, 95% were on islands. On a per unit area basis, the extinction rate on islands was 177 times higher for mammals and 187 times higher for birds than on continents. The continental mammal extinction rate was between 0.89 and 7.4 times the background rate, whereas the island mammal extinction rate was between 82 and 702 times background. The continental bird extinction rate was between 0.69 and 5.9 times the background rate, whereas for islands it was between 98 and 844 times the background rate. Undocumented prehistoric extinctions, particularly on islands, amplify these trends. Island extinction rates are much higher than continental rates largely because of introductions of alien predators (including man) and diseases. Main conclusions Our analysis suggests that conservation strategies for birds and mammals on continents should not be based on island extinction rates and that on islands the key factor to enhance conservation is to alleviate pressures from uncontrolled hunting and predation.     

Interspecies embryo and nuclei transfer as an approach to endangered mammalian species conservation

A review represents the current status in the area of interspecies embryos and nuclei transfer for conservation of mammalian species and breeds. Modern a chievements have been reviewed in a historical pretext and key techniques, main problems, and perspectives of this approach have been discussed.     

浙江省珍稀濒危植物物种多样性保护的关键区域

浙江省植物资源丰富,有野生维管植物215科1196属3283种,其中包含了我国特有属49个,浙江省特有植物约200余种,许多物种十分稀少,并受到严重威胁,亟待保护。但浙江省需优先保护的植物物种的分布并不是均匀的,有些地区的重要保护对象比较集中,对这些地区我们应该给予更多的保护。本文根据维管植物物种多样性、珍稀濒危植物的物种数量及个体数量特征、受威胁状况以及浙江省特有植物的分布情况,提出了浙江省珍稀濒危植物保护的7个关键区域：以西天目山为中心的浙西北山区,以古田山为中心的浙西山区,以九龙山为中心的浙西南山区,以凤阳山－百山祖为中心的浙南山区,以括苍山为中心的浙东山区,以天台山为中心的浙东丘陵,以普陀山为中心的舟山群岛。最后提出了浙江省植物物种多样性保护的几点建议。     

Changes in fish assemblages in catchments in north‐eastern Spain: biodiversity,conservation status and introduced species

1. North‐eastern Spain is a hot spot for the introduction of alien fish species, and its native fish fauna is one of the most endangered worldwide. We used an extensive data set from 2002 to 2003 and historical information from the area to characterize fish diversity and establish conservation priorities in river catchments. 2. Diversity indices were used to characterize fish diversity at the basin scale. An index of conservation status was applied for each species, which considers the occurrence, abundance and endemicity of each taxon. We used indirect ordination methods to test the relationship among basin features and to identify those variables most correlated with each other. To identify physical, biotic and environmental characteristics that seem to make a basin particularly susceptible to invasion, we performed a step‐wise multiple regression to examine the relationship between the number of native, translocated and introduced fish species (including the original native species richness of each basin), and landscape variables. 3. Over a period of approximately 50 years, the mean range size of native fish species has decreased by 60%. The greatest decline occurred in Gasterosteus gymnurus, Anguilla anguilla and Salaria fluviatilis, for which species over 75% of the original distribution area has been lost. The species with the highest conservation index were Gasterosteus gymnurus and Salaria fluviatilis. 4. Basin area and the catchment type explained 70% of variation in native species richness, whereas the number of dams and basin area accounted for more than 80% of variation in the number of introduced species. 5. The original native species richness and the number of introduced species at basin scale were not related, and thus there was no evidence of “biotic resistance” to invasion. The restoration of natural hydrologic processes and the development of specific management tools to protect native species, such as the prioritization of areas for fish conservation and the eradication of local populations of exotic species, are required to restore native fish fauna in these catchments.     

Relative need for conservation assessments of vascular plant species among ecoregions

Aim (1) To determine the relative need for conservation assessments of vascular plant species among the world’s ecoregions given under‐assessed species distributions; (2) to evaluate the challenge posed by the lack of financial resources on species assessment efforts; and (3) to demonstrate the utility of nonlinear mixed‐effects models with both homoscedastic and heteroscedastic error structures in the identification of species‐rich ecoregions. Location Global. Methods We identified the world’s ecoregions that contain the highest vascular plant species richness after controlling for area using species–area relationship (SAR) models built within a mixed‐effects multi‐model framework. Using quantitative thresholds, ecoregions with the highest plant species richness, historical habitat loss and projected increase in human population density were deemed to be most in need of conservation assessments of plant species. We used generalized linear models to test if countries that overlap with highly important ecoregions are poorer compared with others. Results We classed ecoregions into nine categories based on the relative need for conservation assessments of vascular plant species. Ecoregions of highest relative need are found mostly in the tropics, particularly Southeast Asia, Central America, Tropical Andes and the Cerrado of South America, and the East African montane region and its surrounding areas. Countries overlapping with ecoregions deemed important for conservation assessments are poorer as measured by their capita gross national income than the other countries. The nonlinear mixed modelling framework was effective in reducing residual spatial autocorrelation compared with nonlinear models comprised of only fixed effects. In contrasting multiple SAR models to identify species‐rich ecoregions, there was not one SAR model that fitted best across all biomes. Not all SAR models displayed homoscedastic errors; therefore it is important to consider models with both homoscedastic and heteroscedastic error structures. Main conclusions We propose that conservation assessments should be conducted first in ecoregions with the greatest predicted species richness, historical habitat loss and future human population increase. As ecoregions deemed to be important for conservation assessments are located in the poorest countries, we urge international aid agencies and botanic gardens to cooperate with both local and international scientists to fund and implement conservation assessment programmes there.     

Establishing conservation units to promote recovery of two threatened freshwater mussel species (Bivalvia: Unionida: Potamilus)

Population genomics has significantly increased our ability to make inferences about microevolutionary processes and demographic histories, which have the potential to improve protection and recovery of imperiled species. Freshwater mussels (Bivalvia: Unionida) represent one of the most imperiled groups of organisms globally. Despite systemic decline of mussel abundance and diversity, studies evaluating spatiotemporal changes in distribution, demographic histories, and ecological factors that threaten long‐term persistence of imperiled species remain lacking. In this study, we use genotype‐by‐sequencing (GBS) and mitochondrial sequence data (mtDNA) to define conservation units (CUs) for two highly imperiled freshwater mussel species, Potamilus amphichaenus and Potamilus streckersoni. We then synthesize our molecular findings with details from field collections spanning from 1901 to 2019 to further elucidate distributional trends, contemporary status, and other factors that may be contributing to population declines for our focal species. We collected GBS and mtDNA data for individuals of P. amphichaenus and P. streckersoni from freshwater mussel collections in the Brazos, Neches, Sabine, and Trinity drainages ranging from 2012 to 2019. Molecular analyses resolved disputing number of genetic clusters within P. amphichaenus and P. streckersoni; however, we find defensible support for four CUs, each corresponding to an independent river basin. Evaluations of historical and recent occurrence data illuminated a generally increasing trend of occurrence in each of the four CUs, which were correlated with recent increases in sampling effort. Taken together, these findings suggest that P. amphichaenus and P. streckersoni are likely rare throughout their respective ranges. Because of this, the establishment of CUs will facilitate evidence‐based recovery planning and ensure potential captive propagation and translocation efforts are beneficial. Our synthesis represents a case study for conservation genomic assessments in freshwater mussels and provides a model for future studies aimed at recovery planning for these highly imperiled organisms.     

Identifying evolutionarily significant units for conservation of the endangered Malus sieversii using genome‐wide RADseq data

Malus sieversii, a wild progenitor of the domesticated apple, is an endangered species and is assigned second conservation priority by the China Plant Red Data Book. It is urgent to carry out in situ conservation of this species, but previous studies have not identified evolutionarily significant units (ESUs) for conservation management. In this study, we investigated the genetic diversity and relationships of six M. sieversii populations from China using integrated analysis of microsatellite (nSSR) data, genome‐wide SNPs and previous results in order to propose a reasonable conservation management. The results showed that levels of genetic diversity were inconsistently reflected by our nSSR and previous studies, suggesting that indices of genetic diversity are not effective to identify priority conservation areas for M. sieversii. Based on the selection criteria of ESUs for endangered species conservation, ESUs should reflect lineage divergence, geographical separation and different adaptive variation. Our phylogenetic tree based on genome‐wide SNPs yielded a clear relationship of divergent lineages among M. sieversii populations, leading to new different from those of previous studies. Three independent lineages, including the pairs of populations Huocheng‐Yining, Gongliu‐Xinyuan and Tuoli‐Emin, were identified. The geographic distances between populations among the different phylogenetic lineages were much greater than those within the same phylogenetic lineage. A cluster analysis on environmental variables showed that the three independent lineages inhabit different environmental conditions, suggesting that they may have adapted to different environments. Based on the results, we propose that three independent ESUs should be recognized as conservation units for M. sieversii in China.     

The need for speed: informed land acquisitions for conservation in a dynamic property market

Land acquisition is a common approach to biodiversity conservation but is typically subject to property availability on the public market. Consequently, conservation plans are often unable to be implemented as intended. When properties come on the market, conservation agencies must make a choice: purchase immediately, often without a detailed knowledge of its biodiversity value; survey the parcel and accept the risk that it may be removed from the market during this process; or not purchase and hope a better parcel comes on the market at a later date. We describe both an optimal method, using stochastic dynamic programming, and a simple rule of thumb for making such decisions. The solutions to this problem illustrate how optimal conservation is necessarily dynamic and requires explicit consideration of both the time period allowed for implementation and the availability of properties.     

Global conservation strategies for two clades of snakes: combining taxon-specific goals with general prioritization schemes

Aim We present the first attempt of mapping global conservation priorities for two snake clades, Viperidae and Elapidae. We compared the global conservation priorities of each clade with the nine global conservation schemes defined by Brooks et al. to evaluate how effective these schemes are in ensuring the preservation of viperid and elapid biodiversity. Location Global. Methods Based on range maps of 228 species of Viperidae and 224 species of Elapidae, we used systematic conservation planning methods of complementarity and irreplaceability to generate a set of conservation networks under two cost scenarios: (1) minimizing conservation‐human development conflicts and (2) maximizing environmental suitability for high snake richness. Analysis of variance was used to investigate whether the mean irreplaceability of cells matching the areas covered by each of the nine global prioritization schemes in Brooks et al. was higher than the mean irreplaceability of cells located outside these areas. Results Overall, few areas showed irreplaceability higher than 0.5 based on a goal of representing 25% of the species’ ranges. The conservation networks generated in expectation of low conflicts between human development and conservation were quite different from the networks of high environmental suitability. Areas with higher irreplaceability coincided with the regions covered by global schemes of Endemic Bird Areas (for Viperidae and Elapidae) and High‐Biodiversity Wilderness (for Elapidae). Main conclusions Our findings indicated the existence of viable conservation opportunities for these two snake groups. This study can be viewed as a way to overcome, at least in part, the recent criticism concerning the independent development of several global conservation priorities by evaluating which groups of organisms are better represented in each of them. More than simply determining priorities for snakes’ conservation, our analyses showed that the development of parallel priority‐setting initiatives can be reconciled with those strategies for which financial resources are already being designed.     

列入《濒危野生动植物物种国际贸易公约》附录的物种的新标准

ＣＩＴＥＳ（濒危野生动植物国际贸易公约）是一个通过控制贸易的方法来维护物种生存及其持续利用的国际法规,其附录中所列的物种是重点管理的对象,主要根据现有的Ｂｅｒｎｅ标准来确定。但是,长期的实践证明,它已不能满足实际的需要。１９９２年６月ＣＩＴＥＳ常务委员会要求世界保护联盟协助制定一个简明、实用、科学和客观的新标准,本文对此作一简介和讨论。     

A method for spatial freshwater conservation prioritization

1. Freshwater ecosystems are amongst the most threatened and poorly protected globally. They continue to be degraded through habitat loss, pollution and invading species and conservation measures are urgently needed to halt declining trends in their biodiversity and integrity.
2. During the past decade a suite of decision support tools and computational approaches have been developed for efficient and targeted conservation action in terrestrial or marine ecosystems. These methods may be poorly suited for planning in freshwater systems because connectivity in terrestrial and marine systems is typically modelled in a way unsuitable for rivers, where connectivity has a strong directional component.
3. We modify the conservation prioritization method and software, zonation , to account for connectivity in a manner better suited to freshwater ecosystems. Prioritization was performed using subcatchment/catchment-based planning units and connectivity was modified to have directional upstream and downstream components consistent with the ecology of our target species.
4. We demonstrate this modified method for rivers and streams in the southern North Island of New Zealand. Data included predicted occupancy from boosted regression tree models of species distributions for 18 fish species. The study area covered 2.1 million hectares and included 394 first- to fourth order catchment or subcatchment planning units.
5. Realistic modelling of connectivity had a major influence on the areas proposed for conservation. If connectivity was ignored, recommended conservation areas were very fragmented. By contrast, when connectivity was modelled, high priority conservation targets consisted of entire river basins or headwater subcatchments.
6. The proposed method serves as a starting point for the implementation of reserve selection methods in river ecosystems.