Is orchid species richness and abundance related to the conservation status of oak forest?

The response of organisms to anthropogenic or natural modification of the environment is one of the most important questions in conservation biology and ecological theory. In spite of the fact that orchids are one of the most studied groups of plants, little information exists regarding their response to habitat alteration. The few existing studies are biased toward European orchid species and no consensus exists with regard to the response of orchids to human and natural disturbance. In this study, we sampled 30 transects (0.1 ha each) of oak forest located in Morelos, Central Mexico, and measured 13 variables related to forest aging and stump abundance, and six variables of orchid species richness and abundance. Neither abundance nor the richness and specific abundance of orchid genus or species were related to timber extraction. The abundance of dead standing trees in the forest, a surrogate variable of forest age, was positively related to abundance of orchids of the genus Malaxis, orchid richness and orchid abundance. This finding suggests that the conservation of all facets of the studied forest orchid community is dependent on natural processes (such as self-thinning) and the maintenance of older areas of the forest, and concurs with previous studies that suggest that natural disturbance is a key process for orchid survival.     

Eurasian badger habitat selection in Mediterranean environments: Does scale really matter?

It is widely believed that spatial scale affects habitat selection, and should influence management options, especially for species with wide geographic distribution or large territories. Eurasian badger habitat selection has been well studied throughout most of its European distribution range, but never at multiple spatial scales. We used compositional analysis to assess habitat selection of Eurasian badgers in southern Portugal at four spatial scales (1, 4, 25, and 100 km²). We assessed habitat use from setts, latrines and footprints presence, and road kills. Oak woodlands with understorey were selected at all scales, being the most preferred habitat at 3 scales (1, 4, and 100 km²). Pastures were most selected at the scale of the 25 km² cell, but their use was not significantly different from oak woodland with understorey. Shrubs and pastures were also secondly important at the majority of scales. Contrary to findings at northern latitudes, deciduous forests decreased in importance as cell size increased. In the highly humanized and fragmented landscape of southern Portugal, Eurasian badgers are selecting the matrix of oak woodlands interspersed with patches of pastures, shrubs and riparian vegetation. In these oak woodlands, scale does not have a marked effect. Management for badgers should provide, for at least, 30% of oak woodland cover at all scales. Our study illustrates the across-scale importance of maintaining the historically human altered, sustainable and unique landscape and land use system – the montado.     

Do biogeographic parameters matter? Plant species richness and distribution of macrophytes in relation to area and isolation of ponds in NW Polish agricultural landscape

Effects of pond size and isolation on total vascular plant species richness and number of obligate wetland species were compared. Subsequently, the potential for the presence of spatial patterns in wetland species distribution among ponds in an agricultural landscape was explored. Relationships between species richness and two main biogeographic parameters were analysed using simple and multiple linearised regression models. Spatial patterns were looked for by means of analyses carried out with the R CRAN software (join-count statistics). Simple regression analyses performed on the regional scale (n = 50) revealed the significance of the effect of pond size only (r = 0.46 for total plant species richness and r = 0.28 for wetland species richness vs. pond area). Further analyses conducted on the local scale identified the best multiple regression models in the largest pond cluster (n = 20); the models showed statistical significance of relationships between the species richness and both independent variables (r = 0.80 for total plant species richness and r = 0.70 for wetland species richness vs. pond area and isolation, including mean distance to the nearest ten ponds). Spatial analyses were performed for 26 obligate wetland species selected from 149 species recorded in all the 50 ponds. Exploratory spatial data analysis revealed the presence of significant positive spatial autocorrelation in the distribution of 8 species. In such cases, it is possible to reject the random distribution hypothesis, which justifies exploration of spatial regimes. In practice, correct spatial model specifications may have implications for predicting species occurrences under changing environmental conditions, e.g. changes in the number of ponds.     

Using connectivity metrics in conservation planning – when does habitat quality matter?

Aim The objective of conservation planning is often to prioritize patches based on their estimated contribution to metapopulation or metacommunity viability. The contribution that an individual patch makes will depend on its intrinsic characteristics, such as habitat quality, as well as its location relative to other patches, its connectivity. Here we systematically evaluate five patch value metrics to determine the importance of including an estimate of habitat quality into the metrics. Location We tested the metrics in landscapes designed to represent different degrees of variability in patch quality and different levels of patch aggregation. Methods In each landscape, we simulated population dynamics using a spatially explicit, continuous time metapopulation model linked to within patch logistic growth models. We tested five metrics that are used to estimate the contribution that a patch makes to metapopulation viability: two versions of the probability of connectivity index, two versions of patch centrality (a graph theory metric) and the metapopulation capacity metric. Results All metrics performed best in environments where patch quality was very variable and high quality patches were aggregated. Metrics that incorporated some measure of patch quality did better in all environments, but did particularly well in environments with high variance of patch quality and spatial aggregation of good quality patches. Main conclusions Including an estimate of patch quality significantly increased the ability of a given connectivity metric to rank correctly habitat patches according to their contribution to metapopulation viability. Incorporating patch quality is particularly important in landscapes where habitat quality is highly variable and good quality patches are spatially aggregated. However, caution should be used when applying patch metrics to homogeneous landscapes, even if good estimates of patch quality are available. Our results demonstrate that landscape structure and the degree of variability in patch quality need to be assessed prior to selecting a suitable method for estimating patch value.     

Testing for evidence of inefficient selection in bdelloid rotifers: do sample size and habitat differences matter?

Preliminary evidence on inefficient selection has indicated that asexual (=parthenogenetic) animals suffer from a greater accumulation of deleterious mutations compared with their closest sexual sister taxa. However, previous work on bdelloid rotifers did not completely rule out the confounding effects of sample size and habitat differences. Here, we present further evidence of inefficient selection against deleterious mutations in the bdelloid rotifers in comparison with their closest clade, the monogononts, by taking account of larger samples. However, the analysis of samples from both clades co-occurring in the same location seems to contradict the hypothesis. Both groups show evidence of the accumulation of deleterious mutations in mitochondrial DNA, but further population sampling and inclusion of additional genes is needed to resolve this issue.     

Does intrauterine site of insemination in cattle really matter?

Two trials were conducted to determine the influence of semen placement on pregnancy rate in dairy heifers and cows. Seventy-two dairy heifers were artificially inseminated (AI) 10 to 12 h after the first detection of estrus. Control heifers (n = 25) were inseminated at the junction of the uterine body and internal cervical os. The remaining heifers were inseminated deep in one uterine horn, 3 to 5 cm anterior to the external bifurcation. Twenty-three heifers were inseminated in the horn ipsilateral to the ovary bearing the ovulatory follicle, and 24 heifers were inseminated in the contralateral horn. Pregnancy rates did not differ for the three groups of heifers. In a second trial, 64 inseminations were performed in 38 nonlactating, adult dairy cattle. Thirty-one inseminations were made deep in the uterine horn ipsilateral to the ovary bearing the ovulatory follicle and 33 in the contralateral horn. Pregnancy rates were similar for both groups. Combining both trials, pregnancy rates for ipsilateral and contralateral inseminations were equal (32 54 = 59% and 34 57 = 60% , respectively). Therefore, placement of semen in one horn of the uterus does not appear to be a cause of decreased or increased pregnancy rate with AI.     

Species’ surrogacy for conservation planning: caveats from comparing the response of three arboreal rodents to habitat loss and fragmentation

The use of surrogate species in conservation planning has been applied with disappointing results on relatively large sets of species. It could still prove useful for optimizing conservation efforts when considering a small set of species with similar ecological requirements, however few field tests of this nature have been carried out. The aim of this research is to compare the response of three arboreal rodent species—the fat dormouse (Glis glis), the hazel dormouse (Muscardinus avellanarius) and the red squirrel (Sciurus vulgaris)—to habitat loss and fragmentation, with the aim of identifying priorities for conservation and evaluating possible optimization of conservation efforts under different scenarios: habitat restoration and selection of focal patches. We studied the distribution of the three species in a sample of patches in a highly fragmented landscape in central Italy, using a patch-landscape scale approach. The distribution was studied by using hair tubes, nestboxes and nocturnal surveys. The three species showed analogous responses to increasing isolation and decreasing size of habitat patches; what differed however, was the magnitude of responses. Our results show possible application of surrogacy within this restricted group of species, however several caveats arise depending on the conservation strategy and available funding. If habitat restoration is the objective, then the fat dormouse should be the target species for guiding size and isolation of patches. On the other hand, the magnitude of the differences and patch requirements for this species, question the feasibility of these conservation actions. If selection of focal patches for conservation is the objective then selecting the fat dormouse as a focal/umbrella species would overlook areas suitable for the other two species. Feasible optimisation of conservation efforts may be possible only between the red squirrel and the hazel dormouse.     

Does size really matter? Weight and values in public health

The medical community has long regarded obesity and overweight as serious health risks, and popular culture reflects these concerns. A focus on body weight reduction motivates many contemporary exercise and diet practices, especially among women. Yet, there is significant evidence that those risks have been exaggerated, that weight loss regimens may be more detrimental to health than moderate obesity, and that pressure to be thin leads to disordered eating and unhealthy lifestyle choices. This paper examines the problematic manners in which some national health policies regard the problems of overweight and obesity. It contends that concepts of aesthetics, grounded in 19th-century beliefs about the body, guide clinicians to emphasize measurement of the body in health assessment at potential cost to individual wellness.     

Does habitat use explain large scale species richness patterns of aquatic beetles in Europe?

Regularities in species richness are widely observed but controversy continues over its mechanistic explanation. Because richness patterns are usually a compound measure derived from taxonomically diverse species with different ecological requirements, these analyses may confound diverse causes of species numbers. Here we investigate species richness in the aquatic beetle fauna of Europe, separating major taxonomic groups and two major ecological types, species occurring in standing and running water bodies. We collated species distributions for 800+ species of water beetles in 15 regions across western Europe. Species number in any of these regions was related to three variables: total area size, geographic connectedness of the area, and latitude. Pooled species numbers were accurately predicted, but correlations were different for species associated with either running or standing water. The former were mostly correlated with latitude, while the latter were only correlated with the measure of connectedness or with area size. These differences were generally also observed in each of the four phylogenetically independent lineages of aquatic Coleoptera when analysed separately. We propose that effects of habitat, in this case possibly mediated by different long term persistence of running and standing water bodies, impose constraints at the population or local level which, if effective over larger temporal and spatial scales, determine global patterns of species richness.     

Can we predict centres of plant species richness and rarity from environmental variables in sub‐Saharan Africa?

In order to investigate continental-scale patterns of plant species richness and rarity, distribution maps of 3661 plant species were digitized into a one degree grid of sub-Saharan Africa using the WORLDMAP computer programme. Cells with high species richness were also likely to be those containing the greatest number of species of restricted range, but areas such as the South African Cape and the Eastern Arc mountains were found to have more restricted-range species than predicted from their richness scores. The two environmental predictors which had the strongest individual relationships with both species richness and range-size rarity were absolute maximum annual temperature and mean monthly potential evapotranspiration. However, correlative predictive powers of these variables were low, with R =−0.58 and R =−0.54, respectively ( P  < 0.01). Multiple regression also failed to produce a strong explanatory model for observed continental-scale patterns of diversity. Spatial variability analysis showed that this was likely to be because different environmental parameters predicted different centres of richness and rarity. West African species richness was better predicted by absolute maximum annual temperature, whereas East African species richness was better predicted by mean monthly potential evapotranspiration.  © 2003 The Linnean Society of London, Botanical Journal of the Linnean Society , 2003, 142 , 187–197.     

How far can a tortoise walk in open habitat before overheating? Implications for conservation

Terrestrial chelonians are threatened worldwide by habitat destruction and illegal harvesting. Tortoises are slow moving animals susceptible to dehydration and overheating during movements in open habitats. Many species inhabit arid steppes where the availability of thermally buffered refuges (e.g. burrows) is a limiting factor. Determining the maximal distance between refuges that individuals can safely traverse during the active season is thus essential. We examined the relationship between body temperature variations and movement patterns in adult Testudo graeca in the arid steppes of Morocco. Using physical and mathematical models, our results suggest that during the active season adults cannot travel more than 1 km without serious risk of overheating. However, radio-tracking suggests that free-ranging individuals are behaviourally limited to 0.5 km trips between refuges. Overall, maintaining a distance less than 0.5 km between refuges (e.g. through bush planting) is essential to limit fragmentation and to retain healthy populations. This restoration would also benefit to many other species that depend on bush-refuges.     

Do rural impoundments in coastal Bay of Fundy,Canada sustain adequate habitat for wildlife?

In Canada and elsewhere in North America, impoundments are created in compensation for historic wetland loss and for habitat loss due to development projects, but these new sites are infrequently evaluated to determine how effectively they function. The Cumberland Marsh Region (CMR), located at the head of the Bay of Fundy, Canada, is of importance to migratory birds and has been subject to 300+ years of anthropogenic alteration, including impoundment creation on diked and drained tidal marsh in the last five decades. Wetland managers have noticed a pervasive decline in impoundment productivity leading to reduced waterbird usage (senescence). To understand factors that promote senescence, we analyzed abiotic and biotic proxies in sediment archives from six freshwater impoundments in two coastal watersheds to assess spatial trends across the CMR within recent decades. Our results demonstrate that impoundment productivity is driven by autochthonous nutrient sources (C/N between 7.7 and 14.4), but biogeochemical conditions can be highly variable among impoundments despite their proximity. Biogeochemical variation among top-of-core sediment samples from each impoundment was generally minimal, and thus we believe that the aging of impoundments has resulted in low productivity and organic matter accumulation due to dike stabilization and declines in nutrient loading. We conclude that these freshwater impoundments (in the CMR and likely other similar settings) are not highly productive, and may not provide abundant forage and optimal wildlife habitat which is expected of these systems; adaptive management strategies and hydrologic rehabilitation merit consideration to enhance ecological functioning. Understanding landscape attributes, hydrologic dynamics, and conditions prior to and after major human alterations should be a priority in future compensation projects.     

Patterns of richness and endemism of the Mexican herpetofauna,a matter of spatial scale?

The goal of this study was to compare the richness and endemism patterns of Mexican species of amphibians and reptiles at different spatial scales. We used the best available dataset of distributional ranges generated from ecological niche models and employed geographically weighted regressions (GWRs) to test whether richness and endemism were related. Patterns were found to vary with the scale used for richness and endemism, and these patterns were not coincident. The results showed that: (1) only relatively coarse spatial scales can address latitudinal patterns in amphibians and reptiles, and, in fine scales, they are related to topographic formations; (2) areas of greatest endemism for amphibians and reptiles are located in the highlands of the central or southern part of the country, although not necessarily in the same specific highlands for both groups; (3) there is a strong average correlation between richness and endemism for both groups, indicating that the same factors contribute to both patterns, but these factors act differentially in terms of regions among amphibians and reptiles; and (4) the scale at which the analysis is conducted is important, and we believe that careful consideration of spatial scale must be undertaken to avoid false conclusions. © 2013 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 111 , 305–316.     

Gene gain and gene loss in streptococcus: is it driven by habitat?

Bacterial genomes can evolve either by gene gain, gene loss, mutating existing genes, and/or by duplication of existing genes. Recent studies have clearly demonstrated that the acquisition of new genes by lateral gene transfer (LGT) is a predominant force in bacterial evolution. To better understand the significance of LGT, we employed a comparative genomics approach to model species-specific and intraspecies gene insertions/deletions (ins/del among 12 sequenced streptococcal genomes using a maximum likelihood method. This study indicates that the rate of gene ins/del is higher on the external branches and varies dramatically for each species. We have analyzed here some of the experimentally characterized species-specific genes that have been acquired by LGT and conclude that at least a portion of these genes have a role in adaptation.