Mechanisms of ecological succession: insights from plant functional strategies

Successions are a central issue of ecological theory. They are governed by changes in community assembly processes that can be tracked by species’ traits. While single‐trait‐based approaches have been mostly promoted to address community assembly, ecological strategies actually encompass tradeoffs between multiple traits that are relevant to succession theory. We analyzed plant ecological strategies along a 140‐year‐long succession primary succession of 52 vertical outcrop communities after roadwork. We performed a RLQ analysis to relate six functional traits, associated with resource acquisition, competition, colonization ability and phenology, to the age of the outcrops. We found the prominence of two main axes of specialization, one related to resource acquisition and the other to reproduction and regeneration. We further examined the community‐level variation in ecological strategies to assess the abiotic and biotic drivers of community assembly. Using trait‐based statistics of functional richness, regularity and divergence, we found that different processes drove the variation in ecological strategies along the axes of specialization. In late succession, functional convergence was detected for the traits related to resource acquisition as a signature of habitat filtering, while the coexistence of contrasted strategies was found for the traits related to reproduction and regeneration as a result of spatial micro‐heterogeneity. We observed a lack of niche differentiation along the succession, revealing a weak importance of biotic interactions for the regulation of community assembly in the outcrops. Overall, we highlight a prominent role of habitat filtering and spatial micro‐heterogeneity in driving the primary succession governed by water and nutrient limitation.     

Temporal segregations in the surface community of an ephemeral habitat: Time separates the potential competitors of coprophilous Diptera

Temporal separations among species greatly enhance the species' coexistence, especially in insect communities inhabiting temporally unstable, yet resource‐rich, ephemeral habitats like dung or carrion. The insect communities inhabiting ephemeral habitats consist of two components, the internal community dwelling within the substrate (mostly Coleoptera), and the surface community inhabiting the habitat's outer rim (mostly adult Diptera). In contrast to the internal community, the surface community is very rarely studied. We present here the first quantitative study of temporal trends in the surface community of coprophilous dipteran adults. Using artificially created 1.5 L cow dung pats, we studied the succession and seasonality in the surface community during six sampling periods in 2011 and 2012. In total, we sampled 13579 adults of dung‐visiting Diptera. Both the abundance and species richness decreased rapidly throughout the succession, and were highest during summer. Along the successional gradient, the community was separated into two main groups (early and late) and four subgroups: (i) species occurring during the first few hours (mainly Calyptratae: Diptera); (ii) species occurring between the first and second days; (iii) species occurring between the second and third days (mainly Acalyptratae: Diptera); and (iv) species with optima after the third day of dung pat existence (mainly Nematocera). The earliest and latest successional groups, occurring mainly during spring–autumn, were seasonally separated from the two mid‐successional groups, occurring during summer. The ecologically similar species displayed detectable seasonal micro‐optima, which likely facilitate their coexistence. There was a high overall similarity in temporal patterns between dung and carrion surface communities.     

No detectable role for predators mediating effects of aquatic habitat size and permanence on populations and communities of container‐dwelling mosquitoes

1. General theory from aquatic ecology predicts that smaller aquatic habitats have shorter hydroperiods favouring species that are better resource competitors and complete development quickly. Larger habitats are predicted to have longer hydroperiods enabling longer‐lived predators to persist. Habitats with long hydroperiods and predators are predicted to favour slower‐developing, predator‐resistant species, rather than competitive species. 2. In a field experiment, habitat size and hydroperiod were manipulated independently in water‐filled containers, to test these hypotheses about processes structuring aquatic communities. Human‐made containers were used that are dominated by mosquitoes that vary in desiccation resistance, competitive ability, and predation resistance. 3. Habitat size and drying had significant effects on abundances of larvae of the common species in these communities. There was sorting of species by habitat size and by drying, with species that are better competitors relatively more abundant in smaller, more ephemeral habitats, and predator‐resistant, slower‐developing species relatively more abundant in larger or permanently flooded habitats. There were no detectable effects of habitat size or drying on the dominant predator. 4. Habitat size and its interaction with drying affected inputs of eggs to containers. Habitat size also affected relative abundances of the two dominant species in the egg population. 5. Although habitat size and hydroperiod significantly affected composition of these communities, these impacts did not appear to be mediated through effects on predator abundance. Species‐specific differences in habitat size and drying regime preferences, and habitat‐dependent larval performance appear to be the main forces shaping these communities.     

Patch dynamics and temporal dispersal partly shape annual plant communities in ephemeral habitat patches

Most organisms in ephemeral habitat patches have resting stages which form a local species pool in response to temporal variations in the patch's availability and suitability. Temporal dispersal from the local species pool may, therefore, be an important process shaping the community assembly, particularly soon after patch creation, and possibly interacting with environmental filtering. As the temporal variation of the environmental conditions has a major effect on the composition of the local species pool, we investigated how well contemporary conditions (both patch availability and patch suitability) and temporal dispersal (approximated by environmental temporal variation and temporal distance) explain the changes in community composition in a given locality through successive ephemeral habitat cycles. We used arable weeds in annual crops as models. We calculated temporal weed community dissimilarity indices between weed communities surveyed in cropping seasons at intervals of two to eight years within a given field. The weeds were surveyed twice each cropping season to account for any changes in the relative contributions of temporal dispersal and contemporary conditions during the season. Patch availability explained most of the temporal weed dissimilarity, suggesting that patch dynamics have the greatest effect on weed community assembly. Temporal distance and temporal variation of the environmental conditions had more effect at the start of the cropping season than later, while patch suitability had more effect in the middle of the season. These results suggest that temporal dispersal drives the weed community assembly when ephemeral habitat patches are created. These assemblies are further shaped by environmental filtering. This is consistent with a temporal source sink dynamic mechanism where the seed bank acts as the main weed source. However, a large part of temporal weed dissimilarity remains unexplained, suggesting that other ecological processes such as spatial dispersal and founder effect may also shape the weed community.     

Bacterial Succession on the Leaf Surface: A Novel System for Studying Successional Dynamics

Succession is a widely studied process in plant and animal systems, but succession in microbial communities has received relatively little attention despite the ubiquity of microorganisms in natural habitats. One important microbial habitat is the phyllosphere, or leaf surface, which harbors large, diverse populations of bacteria and offers unique opportunities for the study of succession and temporal community assembly patterns. To explore bacterial community successional patterns, we sampled phyllosphere communities on cottonwood (Populus deltoides) trees multiple times across the growing season, from leaf emergence to leaf fall. Bacterial community composition was highly variable throughout the growing season; leaves sampled as little as a week apart were found to harbor significantly different communities, and the temporal variability on a given tree exceeded the variability in community composition between individual trees sampled on a given day. The bacterial communities clearly clustered into early-, mid-, and late-season clusters, with early- and late-season communities being more similar to each other than to the mid-season communities, and these patterns appeared consistent from year to year. Although we observed clear and predictable changes in bacterial community composition during the course of the growing season, changes in phyllosphere bacterial diversity were less predictable. We examined the species–time relationship, a measure of species turnover rate, and found that the relationship was fundamentally similar to that observed in plant and invertebrate communities, just on a shorter time scale. The temporal dynamics we observed suggest that although phyllosphere bacterial communities have high levels of phylogenetic diversity and rapid turnover rates, these communities follow predictable successional patterns from season to season.     

Seasonal strengths of the abiotic and biotic drivers of a zooplankton community

相似文献   

Long-term seasonal variation in the biological traits of benthic-macroinvertebrates in two Mediterranean-climate streams in California, U.S.A.

1. We investigated the seasonal variation of biological traits and the influence of interannual rainfall variability on this pattern. Using long‐term survey data (6–19 years) from an intermittent and a perennial stream in the Mediterranean‐climate region of northern California, we examined 16 fuzzy‐coded biological traits (e.g. maximum size, life cycle duration, and mode of respiration). 2. Seasonal habitat variability is higher in the intermittent stream than in the perennial stream. During the winter and spring wet‐season both streams flood; however, during the summer dry‐season, the intermittent stream forms isolated pools in (occasionally drying completely). 3. Seasonal habitat variability influenced both taxonomic and biological trait composition. Distinct taxonomic communities were present in each season, particularly in the intermittent stream. The intermittent stream also exhibited more seasonal variation in biological traits than the perennial stream. 4. Despite statistically significant seasonal variation, trait composition was relatively stable among seasons in comparison with taxonomic composition and abundance. Taxonomic composition varied considerably between seasons, because of high seasonal and interannual replacement of taxa resulting from seasonal habitat changes. 5. The seasonality of taxonomic composition and abundance was sensitive to interannual rainfall variability. In dry years, the taxonomic composition of communities was more similar between seasons than in wet years, while trait composition was relatively insensitive to rainfall variability. 6. Despite high seasonal variation in abundance and taxonomic composition, biological traits of aquatic macroinvertebrates varied less and exhibited seasonal stability, which may be a result of the unpredictability and harshness of stream environments.     

Temporal Dynamics of Rich Moth Ensembles in the Montane Forest Zone in Southern Ecuador1

We studied temporal dynamics of diverse moth ensembles (Arctiidae and Geometridae) in early and late succession stages of forest recovery in the montane zone of southern Ecuador. Moths were sampled using weak light sources (2 × 15 W tubes per trap) during three sampling periods (March–April 2002, wet season; October–November 2002, and August–October 2003, both “dry” seasons). Arctiid moth abundance hardly varied between sampling periods. Estimates of local diversity were lower in 2002 (wet and dry season) than in the dry season 2003, and ensemble composition was more strongly affected by sampling period rather than habitat differences. Geometridae ensembles revealed stronger temporal patterns. Geometrid abundance increased about twofold from the wet to the dry season, and temporal effects on species composition were far more pronounced that in arctiids. These differences might hint to variation in the dependence of geometrid versus arctiid larvae on ephemeral plant resources. Despite these significant temporal dynamics, in both families only a few of the more common species analyzed individually showed strong temporal changes in abundance. Almost all common species occurred as adults during all sampling periods. Therefore, even though temporal dynamics of moth ensembles are not negligible, both moth families are suitable “indicators” of community diversity and change along the succession gradient. Samples must be large enough, however, and preferably should be collated over various times of the year and in parallel, to allow for valid statements about moth diversity and species compositions in relation to habitat differences. These recommendations undermine the validity of the concept of “rapid biodiversity inventories” for speciose tropical insect communities.     

Seasonal flow variation allows 'time-sharing' by disparate aquatic insect communities in montane desert streams

1. Flow variation can drive major abiotic changes in stream environments between seasons. Theoretically, disparate biotic communities could be maintained during different seasons at a single site if suitable refuges and colonist sources were available. Using isolated montane desert streams in south‐east Arizona as a model system, we hypothesised that two disparate aquatic insect faunas (montane temperate and neotropical) could be maintained at the same sites through strong seasonal variation in abiotic conditions. 2. We collected aquatic insects representing 59 families from seven streams during high‐flow (March–April) and low‐flow (June) sampling periods across two years. We assessed changes in aquatic insect community and functional feeding group composition by habitat (riffle, pool) and season (high flow, low flow). 3. Within sites, wetted stream area decreased by an average of 97% between high‐flow (predominately riffles) and low‐flow (predominately pools) seasons. Community composition likewise showed strong seasonal patterns; the montane temperate fauna was strongly associated with the high‐flow season while neotropical hemipterans and coleopterans were associated with the low‐flow season. Increased water temperature was significantly associated with this shift from temperate to neotropical assemblages. 4. Functional feeding group composition shifted dramatically by season. The proportion of predators increased from 24.5% (high flow) to 75.2% (low flow) while collector–filterers and shredders declined from 38.4% (high flow) to 1.7% (low flow). 5. We suggest that habitat ‘time‐sharing’ by disparate communities is facilitated via strong seasonal variation in temperature and flow and the presence of high elevation refuges or diapause stages for temperate montane taxa to survive the dry season.     

Using functional trait diversity to evaluate the contribution of multiple ecological processes to community assembly during succession

Successional chronosequences provide a unique opportunity to study the effects of multiple ecological processes on plant community assembly. Using a series of 0.5 × 0.5 m² plots (n = 30) from five successional sub‐alpine meadow plant communities (ages 3, 5, 9, 12, and undisturbed) in the Qinghai‐Tibetan Plateau, we investigated whether community assembly is stochastic or deterministic for species and functional traits. We tested directional change in species composition, functional trait composition, and then functional trait diversity measured by Rao's quadratic entropy for four traits – plant height, leaf dry matter content, specific leaf area, and seed mass – along two comparable successional chronosequences. We then evaluated the importance of species interactions, habitat filtering and stochasticity by comparing with random communities and partitioning the environmental and spatial components of Rao's quadratic entropy. We found no directional change in species composition, but clear directionality in functional trait composition. None of the abiotic environmental variables (except P) showed linear change with successional age, but soil moisture and nitrogen were positively related to functional diversity within meadows. Functional trait diversity increased significantly with the increase in successional age. Comparison with random communities showed a significant shift from trait divergence in early stages of succession (3‐ and 5‐yr) to convergence in the later stages of succession 9‐, 12‐yr and undisturbed). The relative importance of abiotic variables and spatial structure for functional trait diversity changed in a predictable manner with successional age. Stochasticity at the species level may indicate dispersal limitation, but deterministic effects on functional trait distributions show the role of both habitat effects and biotic interactions.     

Developing biomonitoring protocols for shallow Arctic lakes using diatoms and artificial substrate samplers

Growing concerns over effects of climate warming and other stressors on shallow Arctic lakes and ponds stimulate the need to develop and implement effective protocols to track changes in ecological integrity. This study assesses seasonal and spatial variability of periphytic diatom communities in a shallow Arctic lake in northern Yukon Territory to establish biomonitoring protocols. Artificial substrate samplers, which mimic macrophytes, allow direct measurement of biotic responses to shifting environmental conditions and control for possible confounding factors (e.g., accrual time and microhabitat type). Artificial substrate samplers were deployed at three locations and retrieved at three times (early, mid, and late) during the ice-free season. Analyses identified that diatom abundance increased exponentially and community composition changed significantly over the ice-free season, despite little variability in water chemistry, but did not differ among the three sampling locations within the lake. Patterns of seasonal succession in diatom community composition were characterized by first arrival of well-dispersed taxa, which included several planktonic taxa, followed by a transitional phase composed of planktonic and periphytic taxa, and culminated with dominance by periphytic species, mainly Achnanthes minutissima (Kützing). Results highlight the role of seasonal succession on artificial substrate colonization and the need to deploy artificial substrate samplers for the duration of the ice-free season to capture peak periphytic algal abundance. Low spatial variability of shallow Arctic lakes allows for samplers to be deployed at one single location to characterize diatom community composition.     

Community assembly of bacteria and archaea in coastal waters governed by contrasting mechanisms: A seasonal perspective

Marine planktonic bacteria and archaea commonly exhibit pronounced seasonal succession in community composition. But the existence of seasonality in their assembly processes and between‐domain differences in underlying mechanism are largely unassessed. Using a high‐coverage sampling strategy (including single sample for each station during four cruises in different seasons), 16S rRNA gene sequencing, and null models, we investigated seasonal patterns in the processes governing spatial turnover of bacteria and archaea in surface coastal waters across a sampling grid over ~300 km in the East China Sea. We found that archaea only bloomed in prokaryotic communities during autumn and winter cruises. Seasonality mostly overwhelmed spatial variability in the compositions of both domains. Bacterial and archaeal communities were dominantly governed by deterministic and stochastic assembly processes, respectively, in autumn cruise, probably due to the differences in niche breadths (bacteria < archaea) and relative abundance (bacteria > archaea). Stochasticity dominated assembly mechanisms of both domains but was driven by distinct processes in winter cruise. Determinism‐dominated assembly mechanisms of bacteria rebounded in spring and summer cruises, reflecting seasonal variability in bacterial community assembly. This could be attributed to seasonal changes in bacterial niche breadths and habitat heterogeneity across the study area. There were seasonal changes in environmental factors mediating the determinism‐stochasticity balance of bacterial community assembly, holding a probability of the existence of unmeasured mediators. Our results suggest contrasting assembly mechanisms of bacteria and archaea in terms of determinism‐vs.‐stochasticity pattern and its seasonality, highlighting the importance of seasonal perspective on microbial community assembly in marine ecosystems.     

Deterministic processes have limited impacts on foliar fungal endophyte communities along a savanna-forest successional gradient

Patterns and drivers of succession provide insight into the mechanisms that govern community assembly, but remain poorly understood for microbial communities. We assess whether successional trends of trees are mirrored by foliar endophyte communities of three tree species across a deterministic woody successional gradient. Additionally, we test the relative contribution of abiotic predictors, biotic factors, and spatial distance between sites in predicting composition and richness of endophyte communities. Unlike the tree community, endophyte communities showed no consistent evidence of deterministic succession. Host identity was the most important factor structuring endophyte community composition; within hosts, spatial distance from the indigenous forest and between samples was important, while environmental predictors had small and inconsistent effects. Much variation in endophyte composition remained unexplained. In contrast, endophyte richness was well-explained by predictor variables. Host identity was most important in predicting endophyte richness, while the effect of other predictors on richness differed between host species. We conclude that deterministic succession in trees did not result in deterministic succession in endophyte communities; instead community assembly was most strongly influenced by host identity; while within hosts, neutral processes may be more important for endophyte assembly than deterministic factors.     

Assessing stream channel restoration: the phased recovery framework

Channel reconfiguration is one of the most common and costly stream restoration techniques, though its effectiveness is frequently questioned. Project monitoring often tracks changes in macroinvertebrate communities and other responses for a 5‐year period. However, channel reconfiguration is a documented disturbance to stream ecosystems, suggesting that this form of restoration initiates succession over longer time frames than monitoring typically captures. To address the role of succession in stream ecosystem recovery, we developed the Phased Recovery Framework (PRF) which proposes benchmarks represented by predictable habitat structure and community composition based on project age. The PRF was tested across nine stream restoration projects in western Montana, ranging in age from 1 to 18 years, each paired with an established reference system. We tested for differences in channel form, habitat character, and macroinvertebrate community composition. While restoration established desired channel form, most biotic variables had not recovered to reference condition even for the oldest projects. Across all sites, phases of the PRF were poor predictors of response. However, analyzing responses to reconfiguration independently for sites in watersheds with unimpaired water quality versus those experiencing excessive nutrient enrichment (i.e. impaired sites) indicated that biological variables converged on reference conditions at unimpaired sites, but diverged across impaired reaches. These large‐scale anthropogenic influences may play a stronger role in recovery than do changes to channel form and need to be incorporated into project design and success criteria. Assessment of the PRF suggests that short‐term monitoring is not likely to produce reliable indicators of effectiveness without incorporating locally appropriate change associated with watershed impairment and successional progression.     

Spatial scale and benthic community organisation in the littoral zones of large oligotrophic lakes: potential for cross-scale interactions

1. We studied the spatial organisation of littoral, benthic invertebrate communities in two large oligotrophic lakes with very extensive heterogeneous littoral zones, and report that littoral communities show significant variation in their structure at multiple spatial scales. 2. At coarser scales, littoral zone topography, riparian inputs and exposure may be important drivers of community spatial structure. At finer scales, the composition of substrates, particularly macrophytes and inorganic sediments, may be drivers of community spatial structure. 3. The effects of substrates on community spatial patterns were non‐additive across scales; community‐habitat correspondence became very noisy when we attempted to extrapolate results throughout the littoral. We present some evidence to suggest that this non‐additivity is because of the interaction among structuring processes that operate at different scales.     

Climatic variables influence the temporal dynamics of an anuran metacommunity in a nonstationary way

Understanding the temporal dynamics of communities is crucial to predict how communities respond to climate change. Several factors can promote variation in phenology among species, including tracking of seasonal resources, adaptive responses to other species, demographic stochasticity, and physiological constraints. The activities of ectothermic vertebrates are sensitive to climatic variations due to the effect of temperature and humidity on species physiology. However, most studies on temporal dynamics have analyzed multi‐year data and do not have resolution to discriminate within‐year patterns that can determine community assembly cycles. Here, we tested the temporal stability and synchrony of calling activity and also how climatic variables influence anuran species composition throughout the year in a metacommunity in the Atlantic Forest of southern Brazil. Using a multivariate method, we described how the relationship between species composition and climatic variables changes through time. The metacommunity showed a weak synchronous spatial pattern, meaning that species responded independently to environmental variation. Interestingly, species composition exhibited a nonstationary response to climate, suggesting that climate affects species composition differently depending on the season. The species‐climate relationship was stronger during the spring, summer, and winter, mainly influenced by temperature, rainfall, and humidity. Thus, temporal community dynamics seem to be mediated by species life‐history traits, in which independent fluctuations promote community stability in temporally varying environments.     

Environmental drivers of anuran calling phenology in a seasonal Neotropical ecosystem

Temporal variation represents an important component in understanding the structure of ecological communities and species coexistence. We examined calling phenology of an assemblage of anurans in the Gran Chaco ecoregion of Bolivia by deploying automated recording devices to document nocturnally vocalizing amphibians nightly at seven ponds from 20 January 2011 until 31 October 2011. Using logistic regression, we modelled the relationships between temperature, rainfall and photoperiod with calling activity. There was a distinct seasonal effect with calling activity concentrated in the rainy season with no species detected during the dry season from June until the end of October. Calling activity was positively and significantly correlated with photoperiod in 9 of the 10 species analyzed, but there were distinct species‐specific relationships associated with rainfall and temperature. All of these species utilize ephemeral ponds as breeding sites, which can account for their reliance on rainfall as an important driver in calling activity. Two prolonged breeders exhibited similar seasonal breeding patterns across the rainy season, but differed in their response to daily abiotic factors, which might be attributed to the constraints imposed by their reproductive mode. Explosive breeders needed several days of rain to elicit calling. Two pairs of congeners had distinct species‐specific relationships between their calling activity and abiotic factors, even though the congeners shared the same reproductive mode, suggesting that the reproductive modes vary in the constraints imposed on calling activity. The patterns observed suggest that calling phenology of tropical anurans is determined by the interaction of exogenous factors (i.e. climatic variables) and endogenous factors (i.e. reproductive modes).     

Environmental filtering predicts plant‐community trait distribution and diversity: Kettle holes as models of meta‐community systems

• Meta‐communities of habitat islands may be essential to maintain biodiversity in anthropogenic landscapes allowing rescue effects in local habitat patches. To understand the species‐assembly mechanisms and dynamics of such ecosystems, it is important to test how local plant‐community diversity and composition is affected by spatial isolation and hence by dispersal limitation and local environmental conditions acting as filters for local species sorting.We used a system of 46 small wetlands (kettle holes)—natural small‐scale freshwater habitats rarely considered in nature conservation policies—embedded in an intensively managed agricultural matrix in northern Germany. We compared two types of kettle holes with distinct topographies (flat‐sloped, ephemeral, frequently plowed kettle holes vs. steep‐sloped, more permanent ones) and determined 254 vascular plant species within these ecosystems, as well as plant functional traits and nearest neighbor distances to other kettle holes.Differences in alpha and beta diversity between steep permanent compared with ephemeral flat kettle holes were mainly explained by species sorting and niche processes and mass effect processes in ephemeral flat kettle holes. The plant‐community composition as well as the community trait distribution in terms of life span, breeding system, dispersal ability, and longevity of seed banks significantly differed between the two habitat types. Flat ephemeral kettle holes held a higher percentage of non‐perennial plants with a more persistent seed bank, less obligate outbreeders and more species with seed dispersal abilities via animal vectors compared with steep‐sloped, more permanent kettle holes that had a higher percentage of wind‐dispersed species. In the flat kettle holes, plant‐species richness was negatively correlated with the degree of isolation, whereas no such pattern was found for the permanent kettle holes.Synthesis: Environment acts as filter shaping plant diversity (alpha and beta) and plant‐community trait distribution between steep permanent compared with ephemeral flat kettle holes supporting species sorting and niche mechanisms as expected, but we identified a mass effect in ephemeral kettle holes only. Flat ephemeral kettle holes can be regarded as meta‐ecosystems that strongly depend on seed dispersal and recruitment from a seed bank, whereas neighboring permanent kettle holes have a more stable local species diversity.

     

鸟类群落研究进展

鸟类群落的研究一直是鸟类生态学研究的重要领域,研究内容主要集中在以下几个方面:群落的组成结构、集团结构、生态位与种间关系、动态与演替、群落与栖息地关系以及城市化对鸟类群落影响。群落的组成与结构、动态与演替以及群落与栖息地关系的研究是过去20年间的研究热点,但有关城市化对鸟类群落影响的研究还比较少。本文在总结国内外鸟类群落生态学研究的基础上,重点讨论了目前的研究热点和今后的发展趋势,以期促进我国鸟类群落生态学的研究。     

The influence of habitat heterogeneity on freshwater bacterial community composition and dynamics

Multiple forces structure natural microbial communities, but the relative roles and interactions of these drivers are poorly understood. Gradients of physical and chemical parameters can be especially influential. In traditional ecological theory, variability in environmental conditions across space and time represents habitat heterogeneity, which may shape communities. Here we used aquatic microbial communities as a model to investigate the relationship between habitat heterogeneity and community composition and dynamics. We defined spatial habitat heterogeneity as vertical temperature and dissolved oxygen (DO) gradients in the water column, and temporal habitat heterogeneity as variation throughout the open-water season in these environmental parameters. Seasonal lake mixing events contribute to temporal habitat heterogeneity by destroying and re-creating these gradients. Because of this, we selected three lakes along a range of annual mixing frequency (polymictic, dimictic, meromictic) for our study. We found that bacterial community composition (BCC) was distinct between the epilimnion and hypolimnion within stratified lakes, and also more variable within the epilimnia through time. We found stark differences in patterns of epilimnion and hypolimnion dynamics over time and across lakes, suggesting that specific drivers have distinct relative importance for each community.