轮藻和陆地植物系统发育及其进化

Charophytic algae and land plants together make up a monophyletic group, streptophytes, which represents one of the main lineages of multicellular eukaryotes and has contributed greatly to the change of the environment on earth in the Phanerozoic Eon. Significant progress has been made to understand phylogenetic relationships among members of this group by phylogenetic studies of morphological and molecular data over the last twenty-five years. Mesostigma viride is now regarded as among the earliest diverging unicellular organisms in streptophytes. Characeae are the sister group to land plants. Liverworts represent the first diverging lineage of land plants. Hornworts and lycophytes are extant representatives of bryophytes and vascular plants, respectively, when early land plants changed from gametophyte to sporophyte as the dominant generation in the life cycle. Equisetum, Psilotaceae, and ferns constitute the monophyletic group of monilophytes, which are sister to seed plants. Gnetales are related to conifers, not to angiosperms as previously thought. Amborella, Nymphaeales, Hydatellaceae, Illiciales, Trimeniaceae, and Austrobaileya represent the earliest diverging lineages of extant angiosperms. These phylogenetic results, together with recent progress on elucidating genetic and developmental aspects of the plant life cycle, multicellularity, and gravitropism, will facilitate evolutionary developmental studies of these key traits, which will help us to gain mechanistic understanding on how plants adapted to environmental challenges when they colonized the land during one of the major transitions in evolution of life.     

Horizontal gene transfer in the innovation and adaptation of land plants

Horizontal gene transfer (HGT) has been well documented in prokaryotes and unicellular eukaryotes, but its role in plants and animals remains elusive. In a recent study, we showed that at least 57 families of nuclear genes in the moss Physcomitrella patens were acquired from prokaryotes, fungi or viruses and that HGT played a critical role in plant colonization of land. In this paper, we categorize all acquired genes based on their putative functions and biological processes, and further address the importance of HGT in plant innovation and evolution.     

The evolution of the life cycle of brown seaweeds

The brown seaweeds (Phaeophyta) are well-suited for testing theories of the evolution of the sexual alternation of haploid and diploid generations because of the great diversity of life cycles within the phylum. Three theories are investigated in this paper. (1) Diploid growth evolves because it has the effect of complementing deleterious recessive mutations. This is rejected because (a) ancestral haplonty is not a parsimonious inference from current phylogenies; (b) the exaggeration of diploid growth does not evolve in a comb-like fashion; (c) forms with predominantly haploid growth have evolved from smaller isomorphic ancestors; and (d) there is no correlation between haploid growth and monoecy. (2) Diploid growth evolves when gamete dimorphism leads to intense sexual selection, favouring the production of genetically diverse gametes through meiosis. This is rejected because diere is no correlation between the dominance of the diploid generation and the degree of gamete dimorphism. It is possible to show that gamete dimorphism itself has evolved in the Phaeophyta through the increase in size of the macrogamete in forms that have evolved larger sporophytes. (3) Microthalli become specialized as gametophytes because fusion is promoted by releasing gametes into the boundary layer; macrothalli become specialized as sporophytes because dispersal is promoted by releasing zoospores into the water column. This is consistent with the sexual and reproductive biology of Phaeophyta. The classic sexual cycle can then be interpreted as evolving from an asexual alternation of microthallus and macrothallus, governed largely by environmental factors, through selection for the appropriate association of ploidy with vegetative size. The exceptions to this general rule are forms in which gametes are released from macrothalli, where a different suite of sexual characters has evolved.     

Evolution of networks and sequences in eukaryotic cell cycle control

The molecular networks regulating the G1-S transition in budding yeast and mammals are strikingly similar in network structure. However, many of the individual proteins performing similar network roles appear to have unrelated amino acid sequences, suggesting either extremely rapid sequence evolution, or true polyphyly of proteins carrying out identical network roles. A yeast/mammal comparison suggests that network topology, and its associated dynamic properties, rather than regulatory proteins themselves may be the most important elements conserved through evolution. However, recent deep phylogenetic studies show that fungal and animal lineages are relatively closely related in the opisthokont branch of eukaryotes. The presence in plants of cell cycle regulators such as Rb, E2F and cyclins A and D, that appear lost in yeast, suggests cell cycle control in the last common ancestor of the eukaryotes was implemented with this set of regulatory proteins. Forward genetics in non-opisthokonts, such as plants or their green algal relatives, will provide direct information on cell cycle control in these organisms, and may elucidate the potentially more complex cell cycle control network of the last common eukaryotic ancestor.     

Evolution of DNA amounts across land plants (embryophyta)

BACKGROUND AND AIMS: DNA C-values in land plants (comprising bryophytes, lycophytes, monilophytes, gymnosperms and angiosperms) vary approximately 1000-fold from approx. 0.11 to 127.4 pg. To understand the evolutionary significance of this huge variation it is essential to evaluate the phylogenetic component. Recent increases in C-value data (e.g. Plant DNA C-values database; release 2.0, January 2003; http://www.rbgkew.org.uk/cval/homepage.html) together with improved consensus of relationships between and within land plant groups makes such an analysis timely. METHODS: Insights into the distribution of C-values in each group of land plants were gained by superimposing available C-value data (4119 angiosperms, 181 gymnosperms, 63 monilophytes, 4 lycophytes and 171 bryophytes) onto phylogenetic trees. To enable ancestral C-values to be reconstructed for clades within land plants, character-state mapping with parsimony and MacClade was also applied. KEY RESULTS AND CONCLUSIONS: Different land plant groups are characterized by different C-value profiles, distribution of C-values and ancestral C-values. For example, the large ( approximately 1000-fold) range yet strongly skewed distribution of C-values in angiosperms contrasts with the very narrow 12-fold range in bryophytes. Further, character-state mapping showed that the ancestral genome sizes of both angiosperms and bryophytes were reconstructed as very small (i.e. < or =1.4 pg) whereas gymnosperms and most branches of monilophytes were reconstructed with intermediate C-values (i.e. >3.5, <14.0 pg). More in-depth analyses provided evidence for several independent increases and decreases in C-values; for example, decreases in Gnetaceae (Gymnosperms) and heterosperous water ferns (monilophytes); increases in Santalales and some monocots (both angiosperms), Pinaceae, Sciadopityaceae and Cephalotaxaceae (Gymnosperms) and possibly in the Psilotaceae + Ophioglossaceae clade (monilophytes). Thus, in agreement with several focused studies within angiosperm families and genera showing that C-values may both increase and decrease, it is apparent that this dynamic pattern of genome size evolution is repeated on a broad scale across land plants.     

Conservation and diversification of HAIRY MERISTEM gene family in land plants

The shoot apical meristems (SAMs) of land plants are crucial for plant growth and organ formation. In several angiosperms, the HAIRY MERISTEM (HAM) genes function as key regulators that control meristem development and stem cell homeostasis. To date, the origin and evolutionary history of the HAM family in land plants remains unclear. Potentially shared and divergent functions of HAM family members from angiosperms and non-angiosperms are also not known. In constructing a comprehensive phylogeny of the HAM family, we show that HAM proteins are widely present in land plants and that HAM proteins originated prior to the divergence of bryophytes. The HAM family was duplicated in a common ancestor of angiosperms, leading to two distinct groups: type I and type II. Type-II HAM members are widely present in angiosperms, whereas type-I HAM members were independently lost in different orders of monocots. Furthermore, HAM members from angiosperms and non-angiosperms (including bryophytes, lycophytes, ferns and gymnosperms) are able to replace the role of the type-II HAM genes in Arabidopsis, maintaining established SAMs and promoting the initiation of new stem cell niches. Our results uncover the conserved functions of HAM family members and reveal the conserved regulatory mechanisms underlying HAM expression patterning in meristems, providing insight into the evolution of key stem cell regulators in land plants.     

Evolution of land plants: insights from molecular studies on basal lineages

The invasion of the land by plants, or terrestrialization, was one of the most critical events in the history of the Earth. The evolution of land plants included significant transformations in body plans: the emergence of a multicellular diploid sporophyte, transition from gametophyte-dominant to sporophyte-dominant life histories, and development of many specialized tissues and organs, such as stomata, vascular tissues, roots, leaves, seeds, and flowers. Recent advances in molecular genetics in two model basal plants, bryophytes Physcomitrella patens and Marchantia polymorpha, have begun to provide answers to several key questions regarding land plant evolution. This paper discusses the evolution of the genes and regulatory mechanisms that helped drive such significant morphological innovations among land-based plants.     

Modelling the carbon and nitrogen balances of direct land use changes from energy crops in Denmark: a consequential life cycle inventory

This paper addresses the conversion of Danish agricultural land from food/feed crops to energy crops. To this end, a life cycle inventory, which relates the input and output flows from and to the environment of 528 different crop systems, is built and described. This includes seven crops (annuals and perennials), two soil types (sandy loam and sand), two climate types (wet and dry), three initial soil carbon level (high, average, low), two time horizons for soil carbon changes (20 and 100 years), two residues management practices (removal and incorporation into soil) as well as three soil carbon turnover rate reductions in response to the absence of tillage for some perennial crops (0%, 25%, 50%). For all crop systems, nutrient balances, balances between above‐ and below‐ground residues, soil carbon changes, biogenic carbon dioxide flows, emissions of nitrogen compounds and losses of macro‐ and micronutrients are presented. The inventory results highlight Miscanthus as a promising energy crop, indicating it presents the lowest emissions of nitrogen compounds, the highest amount of carbon dioxide sequestrated from the atmosphere, a relatively high carbon turnover efficiency and allows to increase soil organic carbon. Results also show that the magnitude of these benefits depends on the harvest season, soil types and climatic conditions. Inventory results further highlight winter wheat as the only annual crop where straw removal for bioenergy may be sustainable, being the only annual crop not involving losses of soil organic carbon as a result of harvesting the straw. This, however, is conditional to manure application, and is only true on sandy soils.     

The role of land plants,phosphorus weathering and fire in the rise and regulation of atmospheric oxygen

The evolution of vascular plants and their spread across the land surface, beginning ～420 Ma, progressively increased the rate of weathering of phosphorus from rocks. This phosphorus supply promoted terrestrial and marine productivity and the burial of organic carbon, which has been the major source of O₂ over geological timescales. Hence, it is predicted that the rise of plants led to an increase in the O₂ content of the atmosphere from ～12 vol %, 570–400 Ma to its present level of ～21 vol % by ～340 Ma. Previous modelling studies suggest that O₂ then rose to ～35 vol % ～300 Ma. Such high concentrations are difficult to reconcile with the known persistence of forests, because rising O₂ increases the frequency and intensity of vegetation fires, tending to decrease biomass and cause ecological shifts toward faster regenerating ecosystems. Rising O₂ also directly inhibits C3 photosynthetic carbon assimilation and increases the production of toxic reactive oxygen species in cells. These effects suppress plant‐induced phosphorus weathering and hence organic carbon burial, providing a sensitive negative feedback on O₂. A revised model predicts that this mechanism could have regulated atmospheric O₂ within the range 15–25 vol % for the last 350 million years.     

Phylogenetic distribution and evolution of mycorrhizas in land plants

A survey of 659 papers mostly published since 1987 was conducted to compile a checklist of mycorrhizal occurrence among 3,617 species (263 families) of land plants. A plant phylogeny was then used to map the mycorrhizal information to examine evolutionary patterns. Several findings from this survey enhance our understanding of the roles of mycorrhizas in the origin and subsequent diversification of land plants. First, 80 and 92% of surveyed land plant species and families are mycorrhizal. Second, arbuscular mycorrhiza (AM) is the predominant and ancestral type of mycorrhiza in land plants. Its occurrence in a vast majority of land plants and early-diverging lineages of liverworts suggests that the origin of AM probably coincided with the origin of land plants. Third, ectomycorrhiza (ECM) and its derived types independently evolved from AM many times through parallel evolution. Coevolution between plant and fungal partners in ECM and its derived types has probably contributed to diversification of both plant hosts and fungal symbionts. Fourth, mycoheterotrophy and loss of the mycorrhizal condition also evolved many times independently in land plants through parallel evolution.     

Material life cycle assessment in china

From the very beginning, the research of Material Life Cycle Assessment (MLCA) has been an important part of the ecomaterials research in China, and large numbers of researchers have been focusing their efforts on it. From 1998, and supported by the National High-tech Program-863 Projects, the study of some typical materials has been put into practice. Thus far, the first phase of the project has been finished smoothly. The practical MLCA methods have been developed, and the manufacturing technologies and processes of the steel and iron, aluminum, cement, ceramic, polymer and construction coatings have been assessed. The relevant assessment software has been developed. Reference systems are being set up for evaluation by studying typical materials. In this paper, the main achievements are reviewed. Some other developments of MLCA in China are also introduced.     

农业生命周期评价研究进展

作为评价产品系统全链条环境影响的有效工具,生命周期评价（LCA）方法已广泛用于工业领域。农业领域也面临着高强度的资源和环境压力,LCA在农业领域的应用应运而生。旨在综述已有农业LCA研究的基础上,鉴别农业LCA应用存在的问题,并为农业LCA未来的发展提出建议。目前农业LCA存在系统边界和功能单位界定不明晰、缺少区域清单数据库、生命周期环境影响评价模型（LCIA）不能准确反映农业系统环境影响、结果解释存在误区等方面的问题。为了科学准确地衡量农业系统的环境影响,促进农业系统的可持续发展,文章认为农业LCA应该从以下几个方面加强研究,即科学界定评价的参照系、系统边界的扩大及功能单位的合理选取、区域异质性数据库构建与LCIA模型开发、基于组织农业LCA的开发以及对于利益相关者行为的研究。     

哈氏噬纤维菌生活史中形态的变化

【目的】研究哈氏噬纤维菌Cytophaga hutchinsonii 在生活史中细胞形态的变化。【方法】利用光学显微镜、荧光显微镜和电子扫描显微镜对哈氏噬纤维菌生活状态进行详细观察。【结果】发现在饥饿状态下,长杆状菌体开始逐渐弯曲,菌体两端靠近成环形,环形菌体又进一步盘绕收缩成微小球形体,微小球形体在一定条件下能像生孢噬纤维菌的小孢囊一样萌发形成长杆状菌。另外还观察到哈氏噬纤维菌特殊的类核分裂现象。【结论】首次对哈氏噬纤维形成环形菌体和类似小孢囊的微小球形体的过程进行详细描述,为进一步揭示其形态变化与纤维素降解能力之间的关系提供依据。     

Adaptive walks through fitness landscapes for early vascular land plants

Hypothetical adaptive walks (i. e., morphological transformation series gaining increasing relative fitness) were simulated through a computer-generated domain for early vascular land plant morphologies to examine the relationship between the dynamics of adaptive walks and the topologies of fitness landscapes. A total of 15 hypothetical adaptive walks were simulated, assuming that relative fitness was based on performing one or more of four biological tasks: maximizing light interception, mechanical stability, and reproductive success, and minimizing total surface area. Morphologies occupying fitness peaks typically were similar to some early vascular land plant remains. The most stringent task (the minimization of total surface area) resulted in a few, comparatively small Y-shaped morphologies. Based on the 15 walks, the number of fitness peaks increased and their heights decreased as the number of tasks simultaneously performed increased. These results (which are consistent with prior computer-simulated walks treating light interception, mechanical stability, and reproductive success) suggest that the biological requirement to conserve water reduced the number of phenotypic options available to the earliest land plants, and that, once this adaptive hurtle was overcome, the simultaneous performance of two or more tasks, increased the number of phenotypic options with equivalent relative fitnesses that could be rapidly reached due to the comparatively small fitness differential between derived and ancestral morphologies.     

Early evolution of life cycles in embryophytes: A focus on the fossil evidence of gametophyte/sporophyte size and morphological complexity

Abstract Embryophytes (land plants) are distinguished from their green algal ancestors by diplobiontic life cycles, that is, alternation of multicellular gametophytic and sporophytic generations. The bryophyte sporophyte is small and matrotrophic on the dominant gametophyte; extant vascular plants have an independent, dominant sporophyte and a reduced gametophyte. The elaboration of the diplobiontic life cycle in embryophytes has been thoroughly discussed within the context of the Antithetic and the Homologous Theories. The Antithetic Theory proposes a green algal ancestor with a gametophyte‐dominant haplobiontic life cycle. The Homologous Theory suggests a green algal ancestor with alternation of isomorphic generations. The shifts that led from haplobiontic to diplobiontic life cycles and from gametophytic to sporophytic dominance are most probably related with terrestrial habitats. Cladistic studies strongly support the Antithetic Theory in repeatedly identifying charophycean green algae as the closest relatives of land plants. In recent years, exceptionally well‐preserved axial gametophytes have been described from the Rhynie chert (Lower Devonian, 410 Ma), and the complete life cycle of several Rhynie chert plants has been reconstructed. All show an alternation of more or less isomorphic generations, which is currently accepted as the plesiomorphic condition among all early polysporangiophytes, including basal tracheophytes. Here we review the existing evidence for early embryophyte gametophytes. We also discuss some recently discovered plants preserved as compression fossils and interpreted as gametophytes. All the fossil evidence supports the Antithetic Theory and indicates that the gametophytic generation/sporophytic generation size and complexity ratios show a gradual decrease along the land plant phylogenetic tree.     

Early evolution of life cycles in embryophytes:A focus on the fossil evidence of gametophyte/sporophyte size and morphological complexity

Embryophytes (land plants) are distinguished from their green algal ancestors by diplobiontic life cycles,that is,alternation of multicellular gametophytic and sporophytic generations.The bryophyte sporophyte is small and matrotrophic on the dominant gametophyte; extant vascular plants have an independent,dominant sporophyte and a reduced gametophyte.The elaboration of the diplobiontic life cycle in embryophytes has been thoroughly discussed within the context of the Antithetic and the Homologous Theories.The Antithetic Theory proposes a green algal ancestor with a gametophyte-dominant haplobiontic life cycle.The Homologous Theory suggests a green algal ancestor with alternation of isomorphic generations.The shifts that led from haplobiontic to diplobiontic life cycles and from gametophytic to sporophytic dominance are most probably related with terrestrial habitats.Cladistic studies strongly support the Antithetic Theory in repeatedly identifying charophycean green algae as the closest relatives of land plants.In recent years,exceptionally well-preserved axial gametophytes have been described from the Rhynie chert (Lower Devonian,410 Ma),and the complete life cycle of several Rhynie chert plants has been reconstructed.All show an alternation of more or less isomorphic generations,which is currently accepted as the plesiomorphic condition among all early polysporangiophytes,including basal tracheophytes.Here we review the existing evidence for early embryophyte gametophytes.We also discuss some recently discovered plants preserved as compression fossils and interpreted as gametophytes.All the fossil evidence supports the Antithetic Theory and indicates that the gametophytic generation/sporophytic generation size and complexity ratios show a gradual decrease along the land plant phylogenetic tree.