Hybrid filtering to rescue stable oscillations from noise-induced chaos in continuous cultures of budding yeast

In large-scale fermentations with oscillating microbial cultures, noise is commonly present in the feed stream(s). As this can destabilize the oscillations and even generate chaotic behavior, noise filters are employed. Here three types of filters were compared by applying them to a noise-affected continuous culture of Saccharomyces cerevisiae with chaotic oscillations. The aim was to restore the original noise-free stable oscillations. An extended Kalman filter was found to be the least efficient, a neural filter was better and a combined hybrid filter was the best. In addition, better filtering of noise was achieved in the dilution rate than in the oxygen mass transfer coefficient. These results suggest the use of hybrid filters with the dilution rate as the manipulated variable for bioreactor control.     

Leveraging mathematical models for optimizing filter utility at manufacturing scale

In the production of biopharmaceuticals depth filters followed by sterile filters are often employed to remove residual cell debris present in the feed stream. In the back drop of a global pandemic, supply chains associated with the production of biopharmaceuticals have been constrained. These constraints have limited the available amount of depth filters for the manufacture of biologics. This has placed manufacturing facilities in a difficult position having to choose between running processes with reduced number of depth filters and risking a failed batch or the prospect of plants going into temporary shutdown until the depth filter resources are replenished. This communication describes a modeling based method that leverages manufacturing scale filtration data to predict the depth filter performance with a reduced number of filters and an increased operational flux. This method can be used to quantify the acceptable level of area reduction before which the filtration process performance is affected. This enables facilities to manage their filter inventory avoiding potential plant shutdowns and reduces the risks of negative depth filter performance.     

MY EXPERIENCE OF DIGITAL RECORDING

ABSTRACT

Object classifiers that attempt to mimic dolphin echolocation require an auditory weighting function representative of dolphin peripheral auditory processing. An evolutionary program (EvPg) was used to fit the frequency-dependent output of a bank of bandpass filters to the auditory sensitivity of the bottlenose dolphin, Tursiops truncatus. Pseudo-Gaussian (PG) and rounded exponential (ROEX) functions were used to describe individual filter shapes. Variables determining the number of filters per model, overall filter shape and amplitude scaling were submitted to the EvPg for optimization. Maximum deviation (P _e ) between model output and the sensitivity of the dolphin was used as a measure of similarity between the two, i.e., lower P _e indicated a greater similarity. The number of filters converged upon 37 for all ROEX models and ≤ 45 for all PG models. The P _e of the best-performing PG model was 0.08, and for all ROEX models was 0.13. Greatest deviations typically occurred below 5 kHz and above 130 kHz. Relative audiometric sensitivity of a dolphin ear model has been improved relative to previous models, thereby providing an auditory weighting function more representative of dolphin peripheral auditory processing. This model will be applied to further investigate how dolphins use echolocation to discriminate among objects.     

A kinematic method for computing the motion of the body centre-of-mass (CoM) during walking: a Bayesian approach

The gait pattern of a particular patient can be altered in a large set of pathologies. Tracking the body centre-of-mass (CoM) during the gait allows a quantitative evaluation of these diseases at comparing the gait with normal patterns. A correct estimation of this variable is still an open question because of its non-linearity and inaccurate location. This paper presents a novel strategy for tracking the CoM, using a biomechanical gait model whose parameters are determined by a Bayesian strategy. A particle filter is herein implemented for predicting the model parameters from a set of markers located at the sacral zone. The present approach is compared with other conventional tracking methods and decreases the calculated root mean squared error in about a 56% in the x-axis and 59% in the y-axis.     

A kinetic analysis and experimental validation of an integrated system of anaerobic filter and biological aerated filter

An anaerobic/aerobic filter (AF/BAF) system was developed treating dairy wastewater. The influent was blended with recirculated effluent to allow for pre-denitrification in the AF followed by nitrification in the BAF. The recirculation ratio ranged 100-300%. The average chemical oxygen demand (COD) removal efficiency was 79.8-86.8% in the AF and the average total nitrogen removal efficiency was 50.5-80.8% in the AF/BAF system. Steady-state mass balances on the AF were used to analyze removal kinetics in the AF. The kinetic model values for effluent COD in the AF were overestimated as compared with experimental data. The integrated suspended and attached biomass growth rates in the AF were estimated. The specific growth rate of the integrated biomass at each recirculation ratios was 0.6213, 0.6647, and 1.20831/day, respectively. The increase in specific growth rate corresponded to increases in biomass sloughing as the recirculation ratio increased.     

哺乳动物细胞灌流培养工艺开发与优化

近年来生物药市场需求量激增,高产量、高质量、低成本的哺乳动物细胞灌流培养工艺顺势成为工业界和学术界普遍关注的热点。文中围绕灌流培养工艺特有的操作环节及工艺优化应着重关注的细节展开论述,综述了近年来在灌流培养工艺开发和优化上取得的进步和提出的策略,以期为哺乳动物细胞灌流培养技术的开发提供参考。     

Effect of antibody solution conditions on filter performance for virus removal filter Planova™ 20N

We investigated the effect of antibody solution conditions (ionic strength, pH, IgG concentration, buffer composition, and aggregate level (dimer content)) on filter performance for a virus removal filtration process using the Planova? 20N, a virus removal filter. Ionic strength and pH affected the filter flux. A consistent high flux was maintained at an ionic strength greater than 10 mM and at pH 4–8 under a typical buffer composition (sodium chloride, citrate, acetate, and phosphate). Optimum IgG concentration was 10–20 mg/mL allowing for high throughput (kg/m² of IgG). Dimer content negligibly affected the flux level. Under high throughput conditions, virus spiking did not affect flux whereas a parvovirus logarithmic reduction value greater than 5 was maintained. From the results of zeta potential analyses for IgG and the membrane, we considered that electrostatic interactions between antibodies and the membrane affect filter performance (flux level and throughput). These results indicate that the Planova? 20N filter is applicable for a wide range of solution conditions typically used in antibody processing. © 2010 American Institute of Chemical Engineers Biotechnol. Prog., 2010     

Vocal tract motor patterns and resonance during constant frequency song: the white-throated sparrow

Bird song is a complex behavior that requires the coordination of several motor systems. Sound is produced in the syrinx and then modified by the upper vocal tract. Movements of the hyoid skeleton have been shown in the northern cardinal (Cardinalis cardinalis) to be extensively involved in forming an oropharyngeal–esophageal cavity (OEC), which contributes a major resonance to the vocal tract transfer function. Here we report that a similar relationship exists between the volume of the OEC and the fundamental frequency in the white-throated sparrow (Zonotrichia albicollis) whose song, unlike that of the cardinal, consists of a series of almost constant frequency notes. Cineradiography of singing sparrows shows that the oropharyngeal cavity and cranial end of the esophagus expand abruptly at the start of each note and maintain a relatively constant volume until the end of the note. Computation of the vocal tract transfer function suggests a major resonance of the OEC follows the fundamental frequency, making sound transmission more efficient. The presence of similar prominent song-related vocal tract motor patterns in two Oscine families suggests that the active control of the vocal tract resonance by varying the volume of the OEC may be widespread in songbirds. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Effects of varying virus-spiking conditions on a virus-removal filter Planova™ 20N in a virus validation study of antibody solutions

We aimed to investigate the effect of virus‐spiking conditions on the filter performance (flux, flux decay, and parvovirus reduction) of the small virus filter Planova? 20N. We used three kinds of porcine parvovirus (PPV) stocks: serum, serum‐free, and purified. The flux profile with PPV spiking was similar to that without spiking for normal load filtration of about 250–300 L/m². High volume (3 vol %) of serum‐free PPV and 1 vol % serum PPV reduced the flux to some extent for high‐load filtration (over 10 h, ca., 500 L/m², 5 mg/mL IgG solution). Log reduction value (LRV) of PPV was maintained at a high level (>5) over the filtration volume. Flux for Planova? 20N was only minimally affected by the use of different virus stocks for spiking. Transmission electron microphotography showed that the distribution of PPV particles captured inside the membrane wall was reached until the ?60% thickness of the membrane, showing that the membrane of Planova? 20N has a thick effective layer for virus removal. These results provided evidence for the robustness of the filter performance of Planova? 20N, showing that it was not easily affected by virus spiking conditions and that it has a large capacity for high‐load conditions. © 2011 American Institute of Chemical Engineers Biotechnol. Prog., 2011     

Photon dose at the maze entrance door: The comparison of flattening filter and flattening filter free working modes

In recent years, field flattening free accelerators have been introduced in therapy practice. One of the objective of these measurements was to establish if the maze door, designed for accelerators operating with flattening filter can provide adequate shielding in field flattening free mode of operation. Linac installed in this standard one band maze vault is equipped to operate at 6 MV with field flattening filter and in field flattening free mode of operation. Series of measurements of the photon dose at the maze door (with different jaws openings and gantry positions) were performed in both operation modes with and without water canister to mimic standard therapy conditions. In this paper results of photon dose measurements, performed at the maze door of the therapy linear accelerator vault are presented in order to compare photon dose in flattening filter and flattening filter free operation modes. It was obtained that in field flattening free mode of operation, the dose at the maze door is always lower than the dose measured in standard mode of operation with the field flattening filter. In the case when FFF therapy practice should start in some existing therapy vault, no additional shielding measures need to be added at the existing maze door.     

生物滴滤池处理甲苯废气的研究

以陶粒和活性炭为填料的生物滴滤池系统,对人工合成的甲苯废气进行了净化处理试验,4个多月的运行结果表明(1)添加活性炭能提高填料柱的处理性能,陶粒和活性炭组成的复合填料能有效地处理含有甲苯的废气,当进气浓度为2.35g/m3时,去除率可达95%以上,填料柱对甲苯的去除能力为130g/m3·h;(2)在低浓度下,生物滴滤池的处理性能受传质过程控制;(3)填料柱出气通过循环液曝气处理后,废气中甲苯浓度进一步降低.     

Potassium-dependent changes in the conformation of the Kv2.1 potassium channel pore.

The voltage-gated K+ channel, Kv2.1, conducts Na+ in the absence of K+. External tetraethylammonium (TEAo) blocks K+ currents through Kv2.1 with an IC50 of 5 mM, but is completely without effect in the absence of K+. TEAo block can be titrated back upon addition of low [K+]. This suggested that the Kv2.1 pore undergoes a cation-dependent conformational rearrangement in the external vestibule. Individual mutation of lysine (Lys) 356 and 382 in the outer vestibule, to a glycine and a valine, respectively, increased TEAo potency for block of K+ currents by a half log unit. Mutation of Lys 356, which is located at the outer edge of the external vestibule, significantly restored TEAo block in the absence of K+ (IC50 = 21 mM). In contrast, mutation of Lys 382, which is located in the outer vestibule near the TEA binding site, resulted in very weak (extrapolated IC50 = approximately 265 mM) TEAo block in the absence of K+. These data suggest that the cation-dependent alteration in pore conformation that resulted in loss of TEA potency extended to the outer edge of the external vestibule, and primarily involved a repositioning of Lys 356 or a nearby amino acid in the conduction pathway. Block by internal TEA also completely disappeared in the absence of K+, and could be titrated back with low [K+]. Both internal and external TEA potencies were increased by the same low [K+] (30-100 microM) that blocked Na+ currents through the channel. In addition, experiments that combined block by internal and external TEA indicated that the site of K+ action was between the internal and external TEA binding sites. These data indicate that a K+-dependent conformational change also occurs internal to the selectivity filter, and that both internal and external conformational rearrangements resulted from differences in K+ occupancy of the selectivity filter. Kv2.1 inactivation rate was K+ dependent and correlated with TEAo potency; as [K+] was raised, TEAo became more potent and inactivation became faster. Both TEAo potency and inactivation rate saturated at the same [K+]. These results suggest that the rate of slow inactivation in Kv2.1 was influenced by the conformational rearrangements, either internal to the selectivity filter or near the outer edge of the external vestibule, that were associated with differences in TEA potency.     

The use of outer filter effects for Cu(2+) quantitation: a unique example for monitoring nonfluorescent molecule with fluorescence

This article concerns a new and precise strategy for the determination of Cu(2+) based on a color reaction and outer filter effects (OFEs). Cu(2+) can react with sodium diethyldithiocarbamate trihydrate (DDTC) to form a DDTC-Cu(2+) complex with a significant absorption at 447 nm. Being positively correlated with Cu(2+), the absorption could be treated as the basis for the determination of Cu(2+). When cuvettes containing the complex were fixed in the light path of a fluorescence spectrophotometer, the excitation/emitted light were absorbed by the OFEs, similar to absorption mechanisms of inner filter effects. Under suitable conditions, OFEs from the complex could quantitatively reduce the fluorescence intensities of quinine sulfate and acridine yellow by absorbing the excitation or emission light. Compared with traditional absorption spectroscopy (with a detection limit at 0.9 μmol/L), indirect OEF techniques showed increased sensitivities by about 1 order of magnitude. The strategy could be extended to many different systems where components absorb the excitation wavelength and/or emission wavelength of fluorescers.     

The affinity of [3H]quinuclidinyl benzilate and some other radioligands for glass microfiber and cellulose filters in some common liquid scintillation solvents

The optimum conditions for measuring radioactivity in the filtration assay of muscarinic cholinoceptors with tritiated quinuclidinyl benzilate are to use Whatman GF/B filters and to add a simple toluene scintillant to them while they are still damp. Practically all the radioactive material is then slowly extracted into the scintillant and high counting efficiencies are obtained after 24 h. Dried filters, or dry filters in control experiments in the absence of receptor, adsorb much of the radioactivity with a 30% reduction in counting efficiency. Other scintillants were able to extract the radioactive material from dry filters, but were generally not preferable to toluene. The GF/B filters performed better than other glass microfiber and cellulose filters in terms of retention of receptor-bound ligand, rapid filtration rates, and low filter blanks. Toluene is unsuitable as a scintillant with GF/B filters for some other radioligands examined.     

生物滴滤池处理废气中生物质的积累与控制措施

生物滴滤池在废气处理中具有其无以比拟的优点,但由于其在工业化应用面临的最大难题就是如何解决生物质积累所带来的种种问题。综述分析生物滴滤池处理废气中生物质的积累的危害;以εf和αf为参数探求其积累的机理;生物质积累的控制措施,包括化学法、物理机械法与其他一些方法。     

Ciliary feeding structures and particle capture mechanism in the freshwater bryozoan Plumatella repens (Phylactolaemata)

Abstract. In contrast to marine bryozoans, the lophophore structure and the ciliary filter‐feeding mechanism in freshwater bryozoans have so far been only poorly described. Specimens of the phylactolaemate bryozoan Plumatella repens were studied to clarify the tentacular ciliary structures and the particle capture mechanism. Scanning electron microscopy revealed that the tentacles of the lophophore have a frontal band of densely packed cilia, and on each side a zigzag row of laterofrontal cilia and a band of lateral cilia. Phalloidin‐linked fluorescent dye showed no sign of muscular tissue within the tentacles. Video microscopy was used to describe basic characteristics of particle capture. Suspended particles in the incoming water flow, set up by the lateral ‘pump’ cilia on the tentacles, approach the tentacles with a velocity of 1–2 mm s^‐1. Near the tentacles, the particles are stopped by the stiff sensory laterofrontal cilia acting as a mechanical sieve, as previously seen in marine bryozoans. The particle capture mechanism suggested is based on the assumed ability of the sensory stiff laterofrontal cilia to be triggered by the deflection caused by the drag force of the through‐flowing water on a captured food particle. Thus, when a particle is stopped by the laterofrontal cilia, the otherwise stiff cilia are presumably triggered to make an inward flick which brings the restrained particle back into the downward directed main current, possibly to be captured again further down in the lophophore before being carried to the mouth via the food groove. No tentacle flicks and no transport of captured particles on the frontal side of the tentacles were observed. The velocity of the metachronal wave of the water‐pumping lateral cilia was measured to be ～0.2 mm s^‐1, the wavelength was ～7 μm, and hence the ciliary beat frequency estimated to be ～30 Hz (～20 °C). The filter feeding process in P. repens reported here resembles the ciliary sieving process described for marine bryozoans in recent years, although no tentacle flicks were observed in P. repens. The phylogenetic position of the phylactolaemates is discussed in the light of these findings.     

Behaviour and kinematics of continuous ram filtration in bowhead whales (Balaena mysticetus)

Balaenid whales perform long breath-hold foraging dives despite a high drag from their ram filtration of zooplankton. To maximize the volume of prey acquired in a dive with limited oxygen supplies, balaenids must either filter feed only occasionally when prey density is particularly high, or they must swim at slow speeds while filtering to reduce drag and oxygen consumption. Using digital tags with three-axis accelerometers, we studied bowhead whales feeding off West Greenland and present here, to our knowledge, the first detailed data on the kinematics and swimming behaviour of a balaenid whale filter feeding at depth. Bowhead whales employ a continuous fluking gait throughout the bottom phase of foraging dives, moving at very slow speeds (less than 1 m s⁻¹), allowing them to filter feed continuously at depth. Despite the slow speeds, the large mouth aperture provides a water filtration rate of approximately 3 m³ s⁻¹, amounting to some 2000 tonnes of water and prey filtered per dive. We conclude that a food niche of dense, slow-moving zooplankton prey has led balaenids to evolve locomotor and filtering systems adapted to work against a high drag at swimming speeds of less than 0.07 body length s⁻¹ using a continuous fluking gait very different from that of nekton-feeding, aquatic predators.     

应用数字滤波器消除神经放电中的噪声

本研究目的在于应用高通—低通数字滤波器消除神经放电中的噪声。数字滤波器通带频率500～1000Hz,其高通和低通阻带截止频率分别为300和2000Hz,阻带衰减大于25dB。以6阶和4阶Butterworth模拟滤波器变换为数字高通及低通滤波器,并在Apple—Ⅱ和MCS—51系列微机上得以实现。在消除家兔神经动作电位波形的噪声信号时取得了满意的结果。