Interactions of carbaryl with estuarine bacterial communities

The addition of carbaryl (100g/ml) to a model estuarine ecosystem did not affect the number of bacteria in the sediment, but reduced the diversity (as measured by the rarefaction technique) of the microbial community as compared with a control model ecosystem. Two carbaryltolerant strains of bacteria were isolated from the carbaryl-treated system, but none were isolated from the control system. Bacterial growth and filter paper decomposition in mixed cultures was prevented by 100g/ml carbaryl, but this amount had no effect on the extracellular cellulase of an estuarine isolate. Increasing the amount of organic matter in the medium attenuated the toxicity of carbaryl to pure cultures of an estuarine isolate. The addition of 1, 10, or 100g/ml carbaryl to field plots had no effect on bacterial numbers, diversity, or filter paper decomposition. The amount of carbaryl in sediments exposed to 100g/ml fell below the limit of detection by thin-layer chromatography within 12 hours. In sterile and nonsterile model systems, carbaryl rapidly adsorbed to sediment, and hydrolyzed to 1-naphthol in both sediment and water. Although carbaryl may be toxic to bacteria under some conditions, the amounts that might enter and persist in an estuary are insufficient to have a significant impact on the sediment microbial community.     

Effects of sediment type on macrobenthic infaunal colonization of laboratory microcosms

We tested the effects of four different sediment types collected from northern Gulf of Mexico estuarine systems on macroinfaunal colonization and community development in our laboratory flow-through microcosm system. Four sediments, types included , a beach sand, two fine-grained muds, but from different locations, and a 50:50 mixture of one of the mud sediments and beach sand. Our hypothesis was that the pattern of colonization would differ among sediment types based on empirical field data and theory but the differences would be expressed most strongly at sediment type extremes (e.g., mud versus sand). A total of 49 taxa colonized the four sediments. Unidentified Actiniaria (sea anemones) numerically dominated densities among all four sediments with densities ranging between 46.5 to 60.5 per microcosm (20 cm side^–1). Average taxa richness per microcosm (N: 10 replicates per sediment treatment) ranged from 10.4 in one of the mud treatments to 14.9 taxa in the sand. These were the only significant differences among sediment types (P0.05) in taxa richness and we detected no significant effects of sediment type on animal densities. Differences in community metrics, although statistically significant, were generally of a relatively small magnitude. Five of 10 microcosms per treatment were randomly selected to test for effects of sediment depth (e.g., top, mid, and bottom). In vertically sectioned microcosms, average taxa richness in sand treatments was significantly greater than those of the other three sediments. A non-parametric multivariate analysis (Primer) revealed that community structure in the vertically sectioned microcosms differed significantly between sand and one of the mud treatments. Mean taxa richness of top sections differed significantly from mid and bottom sections. We detected significantly higher animal densities and taxa richness (p0.05) in vertically sectioned versus non-sectioned microcosms. However, these differences were unexplained based on experimental protocols.     

Microbial Communities Associated with Electrodes Harvesting Electricity from a Variety of Aquatic Sediments

The microbial communities associated with electrodes from underwater fuel cells harvesting electricity from five different aquatic sediments were investigated. Three fuel cells were constructed with marine, salt-marsh, or freshwater sediments incubated in the laboratory. Fuel cells were also deployed in the field in salt marsh sediments in New Jersey and estuarine sediments in Oregon, USA. All of the sediments produced comparable amounts of power. Analysis of 16S rRNA gene sequences after 3–7 months of incubation demonstrated that all of the energy-harvesting anodes were highly enriched in microorganisms in the -Proteobacteria when compared with control electrodes not connected to a cathode. Geobacteraceae accounted for the majority of -Proteobacterial sequences or all of the energy-harvesting anodes, except the one deployed at the Oregon estuarine site. Quantitative PCR analysis of 16S rRNA genes and culturing studies indicated that Geobacteraceae were 100-fold more abundant on the marine-deployed anodes versus controls. Sequences most similar to microorganisms in the family Desulfobulbaceae predominated on the anode deployed in the estuarine sediments, and a significant proportion of the sequences recovered from the freshwater anodes were closely related to the Fe(III)-reducing isolate, Geothrix fermentans. There was also a specific enrichment of microorganisms on energy harvesting cathodes, but the enriched populations varied with the sediment/water source. Thus, future studies designed to help optimize the harvesting of electricity from aquatic sediments or waste organic matter should focus on the electrode interactions of these microorganisms which are most competitive in colonizing anodes and cathodes.This revised version was published online in November 2004 with corrections to Volume 48.     

Continuously measured changes in redox potential influenced by oxygen penetrating from burrows of Callianassa subterranea

A continuously recording multiple redox sensor was used to measure oxygenation effects in otherwise anoxic sediments. The sensor reacted within three minutes (increase > 50 mV) to oxygen penetrating into the sediment. Different patterns of oxidation/reduction were observed along burrows of sediment-dwelling infauna. Examples of an increase of more than 600 mV lasting 50 hours and short, 1 to 4 hours long, oxidation pulses of 280 mV increase are given. Redox patterns similar to the ones observed along natural burrows were generated using artificial burrows. Oxygen penetrated up to 1 mm by diffusion from burrow walls into the adjacent sediment, whereas elevated Eh values were measured within 3 mm of the burrow. The oxygenation effect of a burrowing shrimp, Callianassa subterranea, was studied in a 3-month experiment with ten sensors and five animals. For one individual we recorded 108 events with Eh increasing by more than 300 mV. It was estimated that below every square meter of sediment surface 0.7 m². burrow surface are subjected to oxygenation at least once per day by the population of Callianassa in the southern North Sea.     

Clearance rates of bacteria-sized particles by freshwater ciliates,measured with monodisperse fluorescent latex beads

Summary Monodisperse fluorescent latex particles with diameters of 0.57 and 1.04 m have been used to measure the clearance rates of bacteria-sized particles by two ciliates from a Norwegian lake. The clearance rates by Epistylis rotans on these particles were in the range 0.23 to 1.26 l ind^-1h^-1, and by Strombidium sp. 0.26 to 0.90 l ind^-1 h^-1. The clearance rates varied with food level and temperature. Possibilities and limitations of the suggested method are discussed.     

Planktonic chlorophyll a and eutrophication in two Mediterranean littoral systems (Mallorca Island,Spain)

Two Mediterranean littoral systems of Mallorca Island have been studied using planktonic chlorophyll a (total concentration and seasonal variations) as trophic indicator. The studied systems are quite different in geomorphology, physicochemical trends and anthropic incidence. S'Albufera-Alcudia Bay is the drainage outlet of a coastal marsh, with a salt wedge estuarine regime. Andratx Harbour is a narrow bay affected by a high anthropic incidence due to the presence of a small fishing port and mainly a large leisure harbour. Both systems are affected by a typical Mediterranean climate and a negligible tide incidence. The present work is based on several year monitoring of physical, chemical and biological water parameters. In S'Albufera-Alcudia Bay, Chl a concentration ranged from 0.01 to 17.10 mg m^–3, the values dropping from the inland site to the sea. The phytoplankton biomass gradient takes its origin in physical and chemical differences. The variance is mainly related to the inland-sea water axis. Nitrogen and silica enriched inland waters are the main source of eutrophication, hence their relation with Chl a. These nutrients entering the Albufera are mainly derived from leaching from farmed soils. The transition from an inland eutrophic system to an oligotrophic marine one show the filter character of these coastal marshes. In Andratx Harbour, Chl a ranged from a non detectable concentration to 6.36 mg m^–3. The ultraplankton (<5 m) was the most important contributor to total concentration. The ultraplankton in this system is related to influence of more oligotrophic open seawater. A greater proportion of microplankton (>20 m) is related both to higher nutrient concentrations and a higher water column stability. In Andratx Harbour, the enclosure state seems very important for development of phytoplankton blooms.     

Histological localization of citrus infectious variegation virus (CVV) inPhaseolus vulgaris

Summary Ultrathin sections ofPhaseolus vulgaris leaves were studied in the electron microscope. The leaves were taken from plants, both healthy and experimentally infected with CVV. The sieve tubes and companion cells of all samples contained a slime-like substance, more or less organized into compact systems. In the mature sieve elements of virus-infected plants systems of parallel membranes were seen along which spherical particles, of about 30 m diameter, were aligned in simple rows.Pubbl No. 117 of Gruppo di Ricerca per le Virosi, del C. N. R.     

Transport of inorganic phosphate inPseudomonas aeruginosa

Inorganic phosphate transport by wild-typePseudomonas aeruginosa cells grown in a phosphate-limited medium involves a biphasic process. The uptake obeys Michaelis-Menten kinetics with respective apparentK _m values of 1.1 M and 10 M for the high- and low-affinity systems. These systems may be also differentiated by their sensitivity to osmotic shock, by their specificity towards phosphite, pyrophosphate, arsenate, and some phosphonates and also by their energy requirements. The two phosphate transport systems fromP. aeruginosa are compared with the two major systems (Pst and Pit) characterized inEscherichia coli.     

A small sensor for detecting animal burrows and monitoring burrow water conductivity

An electrical conductivity probe for measuring ground conductivity is described. The probe measures bulk ground conductivity in situ and can assist in locating animal burrows on a centimeter scale and in monitoring conductivity of burrow waters over long period of times. It is shown how burrow caves are located by their conductivity contrast relative to the soil. The conductivity of the water in a burrow cave 70cm under the swamp surface has been recorded over 15 days. The conductivity dropped during/after periods of significant rainfall, and rapidly increased during tidal inundation of the swamp. At times with neither freshwater nor saltwater input through the openings of the burrow on the surface, the conductivity slowly increased presumably due to diffusion of salt through the burrow walls. The diffusion constant was estimated to be 2×10^–9m²/s, being comparable to previously determined diffusion constants for diffusion of salt within the substrate.     

Microbiological Processes of the Carbon and Sulfur Cycles at Cold Methane Seeps of the North Atlantic

Functioning of microbial communities in surface sediments of the Haakon Mosby underwater mud volcano (lat. 72°N) and in gas seepage fields of the Vestnesa Ridge was investigated using Mir-1 and Mir-2 deep-sea submersibles during the 40th voyage of the research vessel Academician Mstislav Keldysh. Large areas of sedimentary deposits of the Haakon Mosby mud volcano (HMMV) and pockmarks of the Vestnesa Ridge (VR) are covered with bacterial mats 0.1 to 0.5 cm thick. The microbial community making up bacterial mats of the HMMV was dominated by large filamentous bacteria with filaments measuring up to 100 m in length and 2 to 8 m in width. The occurrence of rosettes allowed the observed filamentous bacteria to be referred to the morphologically similar genera Leucothrix or Thiothrix. Three morphological types of filamentous bacteria were identified in bacterial mats covering VR pockmarks. Filaments of type one are morphologically similar with representatives of the genera Thioploca or Desmanthos. Type two filaments had numerous inclusions of sulfur and resembled representatives of the genus Thiothrix. The third morphological type was constituted by single filaments made up of tightly connected disk-like cells and can be assigned to the genus Beggiatoa. The rates of methane oxidation (up to 1570 l C/(dm³ day)) and sulfate reduction (up to 17 mg S/(dm³day)) measured in the surface sediments of HMMV and VR were close to the maximum rates of these processes observed in heavily polluted regions of the northwestern shelf of the Black Sea. High rates of microbiological processes correlated with the high number of bacteria. The rate of methane production in sediments studied was notably lower and ranged from 0.1 to 3.5 CH₄/(dm³ day). Large areas of the HMMV caldera were populated by pogonophoras, represented by the two species Sclerolinum sp. and Oligobrachia sp. The mass development of Sclerolinum sp. in the HMMV caldera was by the activity of aerobic methane-oxidizing bacteria localized inside the cells of these animals. Bacterial cells were also found in the trophosome tissue of Oligobrachia sp., but in cells of these bacteria, we did not observe the membrane structures typical of methanotrophs. The localization pattern of pogonophoras on the surface of reduced sediments suggests that the predominant bacteria in Oligobrachia tissues are sulfur-oxidizing endosymbionts.     

Immunohistochemical localisation of substances reactive to antisera against α-and β-endorphin and met-enkephalin in the brain of Rana temporaria L.

Summary In the brain of Rana temporaria, two distinct systems reactive with - and -endorphin antisera, respectively, and with a met-enkephalin antiserum, have been detected immunohistochemically.Neurons reacting with - and -endorphin antisera are located (1) in the preoptic nucleus, and (2) in the pars ventralis of the tuber cinereum. Immunoreactive nerve fibres of both groups of perikarya end in the infundibular floor near the capillaries and the preoptico-hypophysial tract. Control reactions have shown that the immunoreactivity is suppressed by the corresponding antigens, but also by -LPH. In view of these results the immunoreactive systems examined correspond to an /-endorphin system or a lipotropinergic system.Neurons reacting with the met-enkephalin antiserum are located in the paraventricular organ. Intense immunofluorescence was observed in the infundibular floor. Controls show that the labelling by met-enkephalin antiserum is exclusively suppressed by met-enkephalin.In the pituitary gland, on the other hand, - and -endorphin antisera reveal: 1) the MSH/ACTH-like cells of the pars intermedia and 2) the ACTH-like cells of the pars distalis.Supported by the D.G.R.S.T., Contrat no 77.7.0648     

Saccharomyces cerevisiae can release hepatitis B virus surface antigen (HBsAg) particles into the medium by its secretory apparatus

We constructed a plasmid that directs the synthesis and secretion of hepatitis B virus (HBV) surface antigen (HBsAg) particles by Saccharomyces cerevisiae. This plasmid contains a proteinase-resistant HBsAg M (M-P31c) gene fused at its 5'-terminus with a chicken-lysozyme signal peptide (C-SIG) gene, which is placed under the yeast GLD (glyceraldehyde-3-phosphate dehydrogenese gene) promoter. The products encoded by the C-SIG + M-P31c (LM-P31c) gene were synthesized and assembled themselves into HBsAg particles in yeast cells, and the particles were released into the medium along with poly-HSA (polymerized human serum albumin) binding activity. The HBsAg particles purified from the medium were very similar in density (1.19 g cm^–3), size (19.2±0.8 nm in diameter) and shape (sphere) to human-plasma-derived HBsAg particles. When several sec (temperature-sensitive secretion-defective) mutants were used as host cells, the release of HBsAg particles into the medium was blocked at 37°C but not at 25°C, indicating that the HBsAg particles are exported through the normal yeast secretion pathway. To our knowledge, this is the first report that yeast cells are capable of secreting particles into the medium. Correspondence to: S. Kuroda     

Gas-phase influence on the mixing in a fluidized bed bio-reactor

Summary The liquid and solids mixing in fluidized bed bio-reactors containing particles with a density only slightly higher than water (1100 kg/m³) is generally consistent with the results found in previous studies for reactors with particles of higher density. The liquid mixing can be described by an axial dispersion model for a large variety of conditions while the solids follow the streamlines of the liquid. In the presence of a gas phase the degree of mixing of both the liquid and the solid phase increased. This effect became larger with increasing reactor diameter. In the extrapolation of laboratory data of three phase fluidized bed bio-reactors to pilot plant systems this effect should be taken into account. The liquid and solids mixing may have a substantial effect on overall conversion rates and on possible microbial stratification in the reactor.Nomenclature Bo Bodenstein number v L/D (-) - D _r diameter of the fluidized bed reactor (m) - D ₁ Dispersion coefficient of the liquid phase (m²/s) - D _g dispersion coefficient of the solid phase (m²/s) - E(in) normalized dye concentration function entering the ideally mixed tank reactor (-) - E(t) normalized dye concentration function as measured (-) - L length of the axial dispersed reactor (m) - t time after dye injection (s) - t _m time constant for microbial selection (s) - t _s solid mixing time constant (s) - t time interval in which a particle migrates within the bed (s) - v _t superficial gas velocity (m/s) - v _g superficial liquid velocity (m/s) - z migration distance of a particle in the bed (m) - ₁ in situ growth rate of a dominant organism (s^-1) - ₂ in situ growth rate of a recessive organism (s^-1) - average residence time in the axial dispersed reactor (s) - _t average residence time in the ideally mixed tank reactor (s)     

Hückel framework study on the superconducting vibronic interaction in (AB) N chains

Superconducting vibronic interaction in the vibronic superconductivity motif has been studied in the Hückel framework for (AB) _N chain systems. Within the on-site and nearest-neighbor approximation a new vibronic constant, /L, has been introduced, of which the importance has been discussed. The effect of the vibronic operator, , has also been studied. It is also concluded that the size-dependence of the superconducting vibronic interaction also exists in the (AB) _N chain systems.On leave from the Changchun Institute of Applied Chemistry, Academia Sinica, Changchun, P. R. China, as an STA fellowship awardee hosted by the Institute of Physical and Chemical Research of Japan.     

Effect of chemical modifiers of amino acid residues on proton conduction by the H+-ATPase of mitochondria

The effect of chemical modifiers of amino acid residues on the proton conductivity of H⁺-ATPase in inside out submitochondrial particles has been studied. Treatment of submitochondrial particles prepared in the presence of EDTA (ESMP) with the arginine modifiers, phenylglyoxal or butanedione, or the tyrosine modifier, tetranitromethane, caused inhibition of the ATPase activity. Phenylglyoxal and tetranitromethane also caused inhibition of the anaerobic release of respiratory H⁺ in ESMP as well as in particles deprived of F₁ (USMP). Butanedione treatment caused, on the contrary, acceleration of anaerobic proton release in both particles. The inhibition of proton release caused by phenylglyoxal and tetranitromethane exhibited in USMP a sigmoidal titration curve. The same inhibitory pattern was observed with oligomycin and withN,N-dicyclohexylcarbodiimide. In ESMP, relaxation of H⁺ exhibited two first-order phases, both an expression of the H⁺ conductivity of the ATPase complex. The rapid phase results from transient enhancement of H⁺ conduction caused by respiratory H⁺ itself. Oligomycin,N,N-dicyclohexylcarbodiimide, and tetranitromethane inhibited both phases of H⁺ release, and butanedione accelerated both. Phenylglyoxal inhibited principally the slow phase of H⁺ conduction. In USMP, H⁺ release followed simple first-order kinetics. Oligomycin depressed H⁺ release, enhanced respiratory H⁺, and restored the biphasicity of H⁺ release. Phenylglyoxal and tetranitromethane inhibited H⁺ release in USMP without modifying its first-order kinetics. Butanedione treatment caused biphasicity of H⁺ release from USMP, introducing a very rapid phase of H⁺ release. Addition of soluble F₁ to USMP also restored biphasicity of H⁺ release. A mechanism of proton conduction by F _o is discussed based on involvement of tyrosine or other hydroxyl residues, in series with the DCCD-reactive acid residue. There are apparently two functionally different species of arginine or other basic residues: those modified by phenylglyoxal, which facilitate H⁺ conduction, and those modified by butanedione, which retard H⁺ diffusion.     

Abiotic formation of particles from extracellular organic carbon released by phytoplankton

¹⁴C-labeled extracellular organic carbon (EOC) released by the phytoplankton in a Danish Estuary was shown immediately to form particles (>0.2m) when the products were added to a natural water sample. About 14%–20% of the added activity could be recovered as particles. Any bacterial assimilation of the extracellular products was thus masked. The abiotic origin of the particulate EOC was verified, and it was shown that the particle formation was due to some factors present in the estuarine water with a nominal diameter >0.2m. Precaution must be taken to avoid misinterpretations in studies concerning carbon flow from algae to bacteria.     

Late Quaternary diatoms in the sediments of Przedni Staw Lake (Polish Tatra Mountains)

The paper presents a diatom succession in the Late Glacial and Holocene sediments of the Przedni Staw lake in the Pie Stawów Polskich Valley High Tatra Mts. Ten diatom phases are distinguished and presented against a pollen diagram from the analyzed core showing continuous sedimentation from the Oldest Dryas to the Subatlantic period. The diatom flora in the Late Glacial sediments is predominantly littoral — Fragilaria, Navicula, Nitzschia, Diploneis, Pinnularia and Amphora species. The Holocene sediments enclose more abundant planktonic species such as Cyclotella quadriiuncta, Asterionella formosa and Melosira distans.     

Respiration rates of two species of Gnathostomulids

Summary Respiration rates for two species of Gnathostomulida from poorly oxygenated subtidal sands of Bermuda were measured using Cartesian diver respirometers.ForHaplognathia cf.ruberrima a respiration-body weight regression gaveR=0.790·W ^0,649 (in l·10^-3O₂/h and g wet weight). Respiration rates for adult animals ofGnathostomula sp. of a mean weight of 1.3 g ranged between 0.25 and 0.63 l·10^-3 O₂/h. These rates are low when compared with literature data on meiobenthic species from a wider habitat range but similar to respiration rates of marine and limnic nematodes living in sediments with strongly reducing capacity.     

Normal expression of the viral gene N interferes with growth of bacteriophage lambda in Escherichia coli 15T-.

Summary Growth of and of some lambdoid phages is considerably inhibited on strain 3057 derived from E. coli 15T^-. Mutants of which overcome this inhibition map in gene N. Some of these hty mutants are temperature sensitive for growth on E. coli K12. Thus plating of on strain 3057 allows one to isolate temperature sensitive N mutants. The hty mutants produce less than normal N activity as judged by their low efficiency of plating on a nus ^- host and by the extended latent period of some of them on normal hosts. The inability of strain 3057 to propagate can be at least partially reversed by addition of thymidine to the medium and the growth difference between hty and in 3057 increases with decreasing thymidine concentration. The amount of DNA produced by in 3057 at low thymidine concentration is lower than that produced by hty under the same conditions. Only a small percentage of the DNA produced by in 3057 is packaged into viable phage particles. This suggests that not only produces less DNA in 3057 than hty but that an important part of the DNA in 3057 is in a form which can not be packaged or which is noninfective for other reasons. A hypothesis is discussed that hty mutations enable to grow on E. coli 15T^- at low thymidine concentration because they lead to reduction in the number of single strand nicks in the DNA by reducing the intracellular endonuclease activity. Under permissive conditions conditional lethal N mutants are favored for growth on 3057 over N ⁺ which confirms the idea that N activity or the activity of a gene under N control interferes with growth in 3057 at low thymidine concentration.     

Selective feeding by the aquatic oligochaete Tubifex tubifex (Tubificidae,Clitellata)

The particle size distribution of faecal pellets produced by the tubificid worm Tubifex tubifex in laboratory culture, was measured with a Coulter® Multisizer. The faecal material from worms cultured in a range of sediments was composed of particles with a mean diameter of less than 63 m, and only a few isolated larger particles were found by microscopic analysis. This suggests that this species actively selects the silt-clay fraction, avoiding larger sand particles. A more detailed analysis of faeces revealed that about 75%, by volume, was composed of particles with a mean diameter < 25m, and the mode was < 10m. T. tubifex fed selectively on the organic rich particles of the sediment, and this feeding was independent of particle size. Measurement of the organic content of faeces (measured as % loss on ignition) showed that they had a consistently higher organic content than the sediment, considered as whole sediments or the <63 m sieved fraction. On the basis of these results, we hypothesise that this species exhibits two levels of selectivity in its feeding behaviour. Thus selection is primarily based on particle size, avoiding the ingestion of sand particles and also, on the preferential selection of particles associated with organic material, within the fine (silt-clay) fraction of the sediment.