Pelagic cephalopods from eastern Australia: species composition, horizontal and vertical distribution determined from the diets of pelagic fishes

The distribution and relative biomass of cephalopods from pelagic waters off eastern Australia was examined between 1997 and 2004 from stomach contents of swordfish, yellowfin tuna and dolphinfish taken in the domestic longline fishery. A total of 38 taxa from 19 families were identified. Comparison of the species composition of the three predators indicated pronounced differences in cephalopod species composition. In swordfish, species of the family Ommastrephidae, particularly Ommastrephes bartramii (Lesueur 1821) and Nototodarus gouldi (McCoy 1888) dominated, whereas a more diverse mix of species was identified from yellowfin-sampled cephalopods. Todaropsis eblanae (Ball 1841) was the main cephalopod sampled from the surface-dwelling dolphinfish. For swordfish-sampled cephalopods, significant relationships were found between biomass and season, fluorescence and year. In yellowfin tuna, cephalopod biomass was significantly correlated with season, area and sea surface temperature. Significant factors differed between predator-sampler, possibly reflecting the limits of the predator, but could also give insights into individual cephalopod species distributions. However, the increase in cephalopod biomass over summer in both swordfish and yellowfin tuna suggested cephalopod biomass was higher over summer in the region.     

Length–length and length–weight relationships of oilfish (Ruvettus pretiosus), escolar (Lepidocybium flavobrunneum), snake mackerel (Gempylus serpens), and longnose lancetfish (Alepisaurus ferox) from the Gulf of Mexico and the western North Atlantic Ocean

Oilfish, escolar, snake mackerel (order Aulopiformes, family Gempylidae), and longnose lancetfish (order Perciformes, family Alepisauridae) sampled from the western North Atlantic and the Gulf of Mexico were analyzed for length–weight and length–length relationships. These species are encountered as occasional bycatch of pelagic longline fisheries. The fish (161 specimens, 19.0–149.1 cm TL) were collected over a 3‐year period (January 2007–January 2010) from pelagic longline gear targeting swordfish and tuna. For each species, 95% confidence limits (CI) of parameters b and log a and regression coefficients (r²) were calculated for log‐transformed length–weight relationships. The length–weight parameter b for all species ranged from 2.881 to 3.358, with regression coefficients (r²) ranging from 0.75 to 0.98. Linear relationships between fork lengths, standard lengths, and total lengths were also calculated.     

The interstitial ciliated protozoa of a Mediterranean microcommunity

The main features of an interstitial ciliate community, living in the coastal sand of the Mediterranean sea, were analyzed during a one-year survey, carried out on 113 samples. The community was composed of 56 species, 31 of which belong to 8 resident genera. Total density varied from 0 to 410 individuals cm^–3 and followed a Spring-Summer and an Autumn-Winter trend, not related to temperature or to any single abiotic variable (interstitial dissolved O₂, grain sand size, salinity), although the density of some taxa was related to one abiotic factor. During Spring, diversity increased by a synchronous bloom involving the whole community. Some taxa, such as the predator Lacrymaria and its prey Frontonia, were significantly associated. The finding of the simultaneous bloom of congeneric species, like that of the genus Remanella suggests that they respond to the same environmental factors, and avoid interspecific competition.     

Geographically widespread swordfish barcode stock identification: a case study of its application

Background

The swordfish (Xiphias gladius) is a cosmopolitan large pelagic fish inhabiting tempered and tropical waters and it is a target species for fisheries all around the world. The present study investigated the ability of COI barcoding to reliably identify swordfish and particularly specific stocks of this commercially important species.

Methodology

We applied the classical DNA barcoding technology, upon a 682 bp segment of COI, and compared swordfish sequences from different geographical sources (Atlantic, Indian Oceans and Mediterranean Sea). The sequences of the 5′ hyper-variable fragment of the control region (5′dloop), were also used to validate the efficacy of COI as a stock-specific marker.

Case Report

This information was successfully applied to the discrimination of unknown samples from the market, detecting in some cases mislabeled seafood products.

Conclusions

The NJ distance-based phenogram (K2P model) obtained with COI sequences allowed us to correlate the swordfish haplotypes to the different geographical stocks. Similar results were obtained with 5′dloop. Our preliminary data in swordfish Xiphias gladius confirm that Cytochrome Oxidase I can be proposed as an efficient species-specific marker that has also the potential to assign geographical provenance. This information might speed the samples analysis in commercial application of barcoding.     

Population structure and spatial patterns for trees in a temperate old-growth evergreen broad-leaved forest in Japan

The population structure and spatial pattern of major tree species in a warm-temperate old-growth evergreen broad-leaved forest in the Tatera Forest Reserve of Japan were investigated. All stems 5 cm in diameter at breast height (DBH) were mapped on a 4 ha plot and analyses were made of population structure and the spatial distribution and spatial association of stems in different vertical layers for nine species. This was done in the context of scale dependency. The plot was located on a very gentle slope and 17.1% of its canopy layer was in gaps. It contained 45 woody plant species and 4570 living stems with a basal area of 63.9 m² ha^–1. Castanopsis cuspidata var. sieboldii, the most dominant species for the basal area, had the maximum DBH among the species present, fewer smaller stems and a lower coefficient of statistical skewness of the DBH distribution. The second most dominant species, Dystilium racemosum, had the highest stem density (410 ha^–1), more abundant smaller stems and a relatively higher coefficient of skewness. Most stems in different vertical layers showed a weakly aggregated distribution with loose colonies as basic units. Gap dependency for the occurrence of stems under the canopy layer was weak. Maximum slope degree of the plot also weakly affected the occurrence of stems. Spatial associations varied among intra- and interspecific cohorts in the different layers and spatial scales examined, and positive associations among cohorts were found more frequently as the scales examined became larger. This tendency suggests that key factors forming observed spatial associations might vary with the spatial scales.     

Selection methods in bacilli for recombinants and transformants of intra- and interspecific fused protoplasts

The intraspecific fusion frequencies obtained with the direct selection method on a semi-synthetic regeneration medium between strains of B. subtilis and B. licheniformis were distribution from 9.9×10^-2 to 4.5×10^-3, which was one or two orders higher than those of interspecific recombinations between B. subtilis and B. licheniformis.The regeneration media were also useful for selecting interspecific transformants from plasmid carrier to non-carrier. This selection could be used as a primary selection method for inter-and intraspecific recombinants obtained by protoplast fusion.Abbreviations NTG N-methyl-N-nitro-N-nitrosoguanidine - Cm chloramphenicol - SMM 0.5 M sucrose-0.02 M MgCl₂-0.02 M maleate buffer, pH 6.5     

Chromosome aberrations induced by protons up to 31 MeV in cultured human cells

Summary Chromosome aberrations were induced in cultured human cells by proton beams of 31, 12, and 8 MeV. The frequencies of isocromatid breaks and dicentrics have been analysed as a function of proton energy and dose. Both effects are largely dependent on proton energy; isochromatid breaks increase linearly with the dose, whereas dicentrics show a definite parabolic behaviour. The experimental data were fitted to the analytic formY = KD ⁿ andY = D +D ² and the best fitted values of the parameters are reported and discussed. The values of RBE for the isochromatid breaks are in the ratio 1.7: 1.3: 1 for 8, 12, and 31 MeV respectively.In the case of the dicentrics the RBE values are dose-dependent function of the typeCD ^–n . The three distributions of dicentrics among the cells do not fit a Poisson distribution.Supported by a grant of CNR n^o 790067996 of the Finalized Project Tumour Growth Control201D; Consiglio Nazionale delle Ricerche, Italy     

The water velocity preferences of Austrosimulium furiosum and Simulium ornatipes (Diptera: Simuliidae) larvae,and the implications for micro-habitat partitioning

The aquatic larvae of two simuliid species, Austrosimulium furiosum (Skuse) and Simulium ornatipes Skuse, which often occur together in Victorian streams, were shown in laboratory experiments to have preferences for different water velocities: larvae of A. furiosum preferred water velocities of 0.2–0.3 m s^–1, and S. ornatipes preferred water velocities of 0.9–1.3 m s ^–1 . Final instar larvae of both species selected slow water speeds of less than 0.25 m s ^–1 prior to pupation. Flow patterns around a cylinder in a laboratory stream were mapped, and the distribution of A. furiosum larvae within the wake, paired vortices and horseshoe vortex was recorded. Larvae selected areas with suitable water velocities and aligned with the flow, providing flow visualization of micro-current speed and direction. The potential for micro-habitat partitioning is discussed in relation to benthic sampling strategies.     

The systematics of Porphyra: character evolution in closely related species

Isozymes, vegetative and reproductive morphology, seasonality, vertical and geographic distributions and chromosomes were compared for six pairs of putative sibling species of Porphyra (P. abbottae/P. torta, P. fallax subsp. fallax/P. fallax subsp. conwayae, P. amplissima/P. cuneiformis, P. fucicola/P. leucostica, P. miniata/P. variegata, P. umbilicalis/P. umbilicalis) and among five species in a complex (P. brumalis, P. kurogii, P. linearis, P. pseudolinearis, and P. purpurea.) Geographic distribution and zymograms for certain proteins showed the greatest change between species pairs: only one pair of species had identical distributions, and most species pairs were disjunct; every species had a different allozyme for GOT-1, whereas all species had apparently identical proteins for phycoerythrin. Seasonality and habitat exhibited moderate differentiation: Northeast Pacific sibling species were characterized by a high intertidal winter species pairing with a mid intertidal spring species, whereas all but one of the other species pairs exhibited nearly identical vertical distributions and seasonalities. There were few changes in morphology: most species pairs had essentially identical morphologies and coloration and the same arrangement of reproductive cells. Chromosome numbers and karyotypes were identical for species pairs and in the species complex. These results provide evidence for different rates of evolution of different characters in the genus Porphyra.     

Dynamic habitat suitability modelling reveals rapid poleward distribution shift in a mobile apex predator

Many taxa are undergoing distribution shifts in response to anthropogenic climate change. However, detecting a climate signal in mobile species is difficult due to their wide‐ranging, patchy distributions, often driven by natural climate variability. For example, difficulties associated with assessing pelagic fish distributions have rendered fisheries management ill‐equipped to adapt to the challenges posed by climate change, leaving pelagic species and ecosystems vulnerable. Here, we demonstrate the value of citizen science data for modelling the dynamic habitat suitability of a mobile pelagic predator (black marlin, Istiompax indica) within the south‐west Pacific Ocean. The extensive spatial and temporal coverage of our occurrence data set (n = 18 717), collected at high resolution (~1.85 km²), enabled identification of suitable habitat at monthly time steps over a 16‐year period (1998–2013). We identified considerable monthly, seasonal and interannual variability in the extent and distribution of suitable habitat, predominately driven by chlorophyll a and sea surface height. Interannual variability correlated with El Nino Southern Oscillation (ENSO) events, with suitable habitat extending up to ~300 km further south during La Nina events. Despite the strong influence of ENSO, our model revealed a rapid poleward shift in the geometric mean of black marlin habitat, occurring at 88.2 km decade^?1. By incorporating multiple environmental factors at monthly time steps, we were able to demonstrate a rapid distribution shift in a mobile pelagic species. Our findings suggest that the rapid velocity of climate change in the south‐west Pacific Ocean is likely affecting mobile pelagic species, indicating that they may be more vulnerable to climate change than previously thought.     

The radiation of spring snails of the genus Belgrandiella in Austria (Mollusca: Caenogastropoda: Hydrobiidae)

Grain density microautoradiography (MAR) was used to study uptake of dissolved amino acids (DFAA) in microalgal communities from a sandy bay on the west coast of Sweden. A mixture of fifteen ³H-labeled amino acids (final concentration 20–80 nmol l^–1) was added to sediment samples collected from two depths (0.5 and 4 m), on five occasions representing different seasons. On all sampling occasions, the microflora was dominated by diatoms (> 85% of the total biomass). Cyanobacteria occurred in the summer and autumn, but never dominated the biomass. Between 5 and 48% of all counted algal cells showed uptake (1–44% of algal biomass). Uptake was recorded for all majors microalgal groups (diatoms, cyanobacteria and autotrophic flagellates). Uptake was more frequent on the shallow site and the highest proportion of cells showing uptake occurred in May. Although uptake was common among both motile and attached growth forms, on several occasions uptake frequencies were higher for attached cells. As the attached fraction is frequently burried out of the photic zone, and not able to rapidly migrate towards light, this implies that heterotrophic capacity should be valuable. Also at species level, some taxa showed higher uptake frequencies than others, for example populations of motile diatom species that displayed a seasonal behaviour (blooming species), such as Nitzschia cf. dissipata and Cylindrotheca closterium. Other species showing frequent uptake were the coccoid colony-forming cyanobacterium Microcrocis sp., and the filamentous cyanobacterium Phormidium sp.. The results suggest that there is a high potential for DFAA uptake in the microphytobenthic community and that for some growth forms and species this could imply a competitive advantage.     

Short-term variations in particulate matter sedimentation off Kapp Norvegia,Weddell Sea,Antarctica: relation to water mass advection,ice cover,plankton biomass and feeding activity

Summary A multi-cup sediment trap was deployed at 250m in the shelf area off Kapp Norvegia, Weddell Sea (630 m water depth) to determine the relative importance of water mass advection, sea ice movement, phytoplankton biomass and plankton feeding. Short-term fluctuations in sedimentation were determined using a sampling frequency of 2.7 days over 54 days during January and February 1988. Three periods of enhanced sedimentation were associated with water mass exchange, settling of diatoms following break-up of ice cover and release of fecal matter by krill feeding on particulate matter derived from phytoplankton and ice algae. An initial sedimentation pulse (28 Jan) was mainly due to sinking pelagic diatoms and krill fecal strings containing algae released from sea ice passing over the trap position. The ¹³C-composition of the sedimented organic carbon was about-24. The isotope ratio decreased sharply by about 5.5 at the end of the first pulse indicating the source of sinking matter becoming pelagic diatoms of the retreating ice-edge. At this time the diatom Corethron criophilum contributed a very high proportion of the organic flux causing an increase of the opal/C_org ratios. The second pulse (6 Feb) was due to empty diatom frustules, minipellets and small planktonic aggregates. Much of the organic carbon was transported by round fecal pellets. During the third pulse (14 Feb), round fecal pellets transported even more; the percentage of C. criophilum to the diatom organic carbon flux was more than 80% (>2mg C m^–2 day^–1).Data presented here were collected during the European Polarstern Study (EPOS) sponsored by the European Science Foundation     

A new null hypothesis for measuring the degree of plant community organization

An attempt is made to derive a measure for the degree of plant community organization, which would not be based on species co-occurrence and co-abundance. The use of the independent random distribution hypothesis (IRDH) is suggested for this purpose. The hypothesis is expected to be valid, if no deterministic phytosociological-structure-generating mechanism is present. If structural variability is used as a statistic for testing the hypothesis, deviances from the conditions of IRDH (species distributions are independent from each other, environmental gradients are lacking) will be attributable either to species interactions (smaller structural variability than expected), or to environmental heterogeneity (greater structural variability than expected). Structural variability is evaluated as the variance of species diversity, the indexN=exp(H') is used for measuring diversity. The precise measure of the degree of community organizationW is computed as the shift between two empirical distributions:D ^* (VN) or Bootstrap distribution of variance of diversity in the community, andD ^o (VN) or the random community variability distribution, which is evaluated after simulating the IRDH conditions.A satisfactory interpretation can be given to the results of evaluatingW for 11 data sets of 10 relevés each.Abbreviation IRDH Independent random distribution hypothesis     

Polymorphisms at the GLUT1 (HepG2) and GLUT4 (muscle/adipocyte) glucose transporter genes and non-insulin-dependent diabetes mellitus (NIDDM)

Summary In order to determine the possible contribution of the GLUT1 (HepG2) glucose transporter gene to the inheritance of non-insulin-dependent diabetes mellitus (NIDDM), two restriction fragment length polymorphisms (RFLPs) and the related haplotypes at this locus were studied in 48 Italian diabetic patients and 58 normal subjects. Genotype frequencies for the XbaI polymorphism were significantly different between patients and controls (XbaI: ² = 9.80, df= 2, P < 0.0079). A significant difference was also found in the allele frequencies between NIDDM patients and controls (² =9.39, df = 1, P < 0.0022), whereas no differences were found for the StuI RFLP. No linkage disequilibrium was detected between the XbaI and StuI RFLPs in this sample. The analysis of the four haplotype frequencies (X1S1, X1S2, X2S1, X2S2) revealed a significant difference between diabetic patients and controls (² = 14.26, df =3, P < 0.002). By comparing single haplotype frequencies, a significant difference between the two groups was found for the X1S1 and X2S2 haplotypes. A two-allele RFLP at the GLUT4 (muscle/adipocyte) glucose transporter gene, detected with the restriction enzyme KpnI, was also examined; no differences were found between patients and controls for this RFLP. The finding of an association between polymorphic markers at the GLUT1 transporter and NIDDM suggests that this locus may contribute to the inherited susceptibility to the disease in this Italian population.     

Preliminary studies of the impact of excreted N on cycling and uptake of N in pasture systems using natural abundance stable isotopic discrimination

The possibility of using natural abundance techniques to determine N transformations and flows after deposition of cattle dung has been examined. These preliminary results showed that ¹⁵N in dung was greater than in plants growing in association with particular pats. This, and other observational information, indicated that dung pats of different ages were being examined. There were significant variations in plant ¹⁵N signatures within and between species grown in association and away from the dung. It was probable that variation in plant ¹⁵N was brought about by changes in soil mineral N pools after transfer of N derived from the dung. This resulted in different ¹⁵N signatures in Trifolium repens (because of changes in N utilization from soil or atmospheric pools), in Lolium perenne (because of changes in ¹⁵N in soil mineral N), but not in Ranunculus repens (because the majority of active roots were outside the range of immediate influence of the deposited dung). The differences in ¹⁵N allowed the development of hypotheses for changes in soil N pools and the acquisition of N by plants from soil, dung or atmospheric sources.     

Seasonal activity and energetics of two species of varanid lizards in tropical Australia

The field metabolic rates (FMR) and rates of water flux were measured in two species of varanid lizards over five periods of the year in tropical Australia. The energetics of these species were further investigated by directly measuring activity (locomotion) and body temperatures of free-ranging animals by radiotelemetry, and by measuring standard metabolic rate (over a range of body temperatures) and activity metabolism in the laboratory. Seasonal differences in the activity and energetics were found in these goannas despite similar, high daytime temperatures throughout the year in tropical Australia. Periods of inactivity were associated with the dry times of the year, but the onset of this period of inactivity differed with respect to habitat even within the same species. Varanus gouldii, which inhabit woodlands only, were inactive during the dry and late dry seasons. V. panoptes that live in the woodland had a similar seasonal pattern of activity, but V. panoptes living near the floodplain of the South Alligator River had their highest levels of activity during the dry season when they walked long distances to forage at the receding edge of the floodplain. However, during the late dry season, after the floodplain had dried completely, they too became inactive. For V. gouldii, the rates of energy expenditure were 196 kJ kg^–1 day^–1 for active animals and 66 kJ kg^–1 day^–1 for inactive animals. The rates of water influx for these groups were respectively 50.7 and 19.5 ml kg^–1 day^–1. For V. panoptes, the rates of energy expenditure were 143 kJ kg^–1 day^–1 for active animals and 56 kJ kg^–1 day^–1 for inactive animals. The rates of water influx for these two groups were respectively 41.4 and 21.0 ml kg^–1 day^–1. We divided the daily energy expenditure into the proportion of energy that lizards used when in burrows, out of burrows but inactive, and in locomotion for the two species during the different seasons. The time spent in locomotion by V. panoptes during the dry season is extremely high for a reptile (mean of 3.5 h/day spent walking), and these results provide an ecological correlate to the high aerobic capacity found in laboratory measurements of some species of varanids.     

Near-bottom zooplankton aggregations in Kongsfjorden: implications for pelago–benthic coupling

Near-bottom zooplankton communities have rarely been studied despite numerous reports of high zooplankton concentrations, probably due to methodological constraints. In Kongsfjorden, Svalbard, the near-bottom layer was studied for the first time by combining daytime deployments of a remotely operated vehicle (ROV), the optical zooplankton sensor moored on-sight key species investigation (MOKI), and Tucker trawl sampling. ROV data from the fjord entrance and the inner fjord showed high near-bottom abundances of euphausiids with a mean concentration of 17.3 ± 3.5 n × 100 m^?3. With the MOKI system, we observed varying numbers of euphausiids, amphipods, chaetognaths, and copepods on the seafloor at six stations. Light-induced zooplankton swarms reached densities in the order of 90,000 (euphausiids), 120,000 (amphipods), and 470,000 ind m^?3 (chaetognaths), whereas older copepodids of Calanus hyperboreus and C. glacialis did not respond to light. They were abundant at the seafloor and 5 and 15 m above and showed maximum abundance of 65,000 ind m^?3. Tucker trawl data provided an overview of the seasonal vertical distribution of euphausiids. The most abundant species Thysanoessa inermis reached near-bottom concentrations of 270 ind m^?3. Regional distribution was neither related to depth nor to location in the fjord. The taxa observed were all part of the pelagic community. Our observations suggest the presence of near-bottom macrozooplankton also in other regions and challenge the current view of bentho–pelagic coupling. Neglecting this community may cause severe underestimates of the stock of pelagic zooplankton, especially predatory species, which link secondary production with higher trophic levels.     

Cationic responses of organs and haemolymph of Biomphalaria pfeifferi (Krauss), Biomphalaria glabrata (Say) and Helisoma trivolvis (Say) (Gastropoda: Planorbirdae) to cationic alterations of the medium

The cationic responses of haemolymph, mantle collar, headfoot, gut + digestive diverticulum and ovotestis + albumin gland of three planorbids to cationic changes in the media are explored. Body organs exhibited cationic homeostasis, although attained with difficulty under very low Ca : Mg and Ca : Na ratios. Haemolymph imbalances were obtained at very low calcium concentrations and at very low Ca : Mg and Ca : Na ratios in the medium; this may be linked to competition for Ca²⁺ uptake sites in the epithelium by Mg²⁺ and possibly Na⁺ ions.Fecundity and shell growth in relation to calcium concentrations and to Ca : Mg and Ca : Na ratios are examined.Normal internal cationic levels, under optimal conditions, were obtained for each species. Significant interspecific differences for haemolymph sodium were found; magnesium levels were slightly higher in Biomphalaria spp. than in Helisoma trivolvis; potassium levels were all similar. Amounts of tissue calcium decreased as follows: Mantle collar head-foot ovotestis + albumin gland-gut + diverticulum. Tissue magnesium levels in the gut were low. H. trivolvis had highest tissue calcium and sodium; B. glabrata had highest tissue potassium.     

Carbon isotope ratios of crassulacean acid metabolism species in relation to climate and phytosociology

Summary The ¹³C, values of the two principal, widely distributed CAM species in Big Bend National Park, Texas, were examined and related to phytosociologic and macroclimatic parameters. Samples of Agave lecheguilla and Opuntia engelmannii were collected along an elevational gradient covering 1370 m, and values for both total and insoluble fractions were measured. Linear regressions were used to correlate changes in values with changes in community importance and mean annual precipitation for both species to determine whether or not they became increasingly C₃-like in their photosynthetic mode at more mesic, upper elevations. In addition, values were measured for other Agave and Opuntia species from different locations and for different seasons and for A. lecheguilla following a short laboratory experiment. Results show that there are very small changes in values for both species along the pronounced temperature and precipitation gradients associated with elevational change. The ranges in values for O. engelmannii are only 1.5 (n=7) and 1.2 (n=6) for total and insoluble fractions respectively. The ranges in values for A. lecheguilla are 2.6 (n=9) and 3.1 (n=9). The results for other species confirm this low variability. We conclude that the species examined are obligate CAM species and that wide elevational distributions are not due to shifts in photosynthetic mode.