Microcomputers in biochemistry

The development of the microcomputer has meant that for the first time individual departments of biochemistry or even laboratories can have their own computing facilities. For less than the cost of a single-beam spectrophotometer it is possible to purchase a complete microcomputer system that is relatively easily programmed and operated. However, a considerable investment of labour is needed tom ake the microcomputer effective in biochemistry and it is a challenge to pare away the mystique from small-scale computing so that it becomes as common a tool as spectrophotometry. In the belief that there are few biochemists who could not benefit from the use of the microcomputer this brief article will explore some of the current and future applications of the microcomputer in biochemistry.     

Mycothiol biochemistry

Mycothiol (MSH) is a novel thiol comprised of N-acetylcysteine amide-linked to GlcN-alpha(1-1)-Ins. It is the major thiol in most actinomycetes and is produced at millimolar levels in mycobacteria and streptomycetes. MSH biosynthesis occurs by linkage of GlcNAc to Ins, deacetylation to GlcN-Ins, ligation of the latter to L-cysteine, and transacetylation of the cysteinyl residue by CoASAc to produce MSH. The genes encoding the respective enzymes have been designated mshA, mshB, mshC, and mshD; all but mshA have been identified. Mycobacterium smegmatis mutants deficient in mshA, mshC, and mshD have been characterized. MSH plays a significant role in the detoxification of thiol-reactive substances, including formaldehyde, various electrophiles, and antibiotics. Mycothiol S-conjugates derived from electrophiles and antibiotics are cleaved by mycothiol S-conjugate amidase to release GlcN-Ins, used to resynthesize MSH, and a mercapturic acid which is excreted from the cell. A mycothiol-disulfide-selective reductase has been identified and likely helps to maintain cellular MSH in the reduced state. Mycothiol biochemistry has characteristics similar to those of glutathione but also has a variety of unique features.     

Spin biochemistry

The rates of adenosine triphosphate (ATP) production by isolated mitochondria and mitochondrial creatime kinase incubated in isotopically pure media containing, separately, ²⁴Mg²⁺, ²⁵Mg²⁺, and ²⁶Mg²⁺ ions were shown to be strongly dependent on the magnesium nuclear spin and magnetic moment. The rate of adenosine 5′-diphosphate phosphorylation in mitochondria with magnetic nuclei²⁵Mg is about twice higher than that with the spinless, nonmagnetic nuclei^24.26Mg. When mitochondrial oxidative phosphorylation was selectively blocked by treatment with 1-methylnicotine amide, ²⁵Mg²⁺ ions were shown to be nearly four times more active in mitochondrial ATP synthesis than ^24,26Mg²⁺ ions. The rate of ATP production associated with creatine kinase is twice higher for ²⁵Mg²⁺ than for ^24.26Mg and does not depend on the blockade of oxidative phosphorylation. There is no difference between ²⁴Mg²⁺ and ²⁶Mg²⁺ effects in both oxidative and substrate phophorylation. These observations demonstrate that the enzymatic phosphorylation is a nuclear spin selective process controlled by magnetic isotope effect. The reaction mechanism proposed includes a participation of intermediate ion-radical pairs with Mg⁺ cation as a radical partner. Therefore, the key mitochondrial phosphotransferases work as a magnesium nuclear spin mediated molecular machines.     

Cre-loxP biochemistry

Cre recombinase is now widely used to carry out complex manipulations of DNA molecules both in vitro and in vivo. For in vitro experiments, there is a clear need for highly pure preparations of Cre and of Cre mutants that serve as controls or supply an altered activity or specificity. In vivo experiments utilizing Cre variants also often require in vitro characterization and some applications involve transfection of purified enzyme to achieve transient activity in the cell. This review outlines a detailed protocol for purification of native Cre and describes straightforward assays that can be used to test for recombination activity in vitro. The design of experiments to trap the intermediates of Cre-loxP site-specific recombination for biophysical studies is also presented. The methods described should be useful to any investigator with a need for purified Cre recombinase and should be broadly applicable to related site-specific recombination systems.     

Aryl azide photolabels in biochemistry

When photolabels are appropriately irradiated they 3roduce highly reactive species that can bind covalently to biomolecules. Recent studies of the modes of reaction of the aryl azides, an important class of photolabel precursors, suggest new experimental approaches to their use.